RNA–Protein interactions for RNA: ENST00000465425.1

SYNE4-204, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 2

Gene SYNE4, Length 2,339 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-204ENST00000465425 TEX48A0A1B0GUV7 120 aa13.48□□□□□ -0.25
SYNE4-204ENST00000465425 C18orf65Q6ZTR6 163 aa13.48□□□□□ -0.25
SYNE4-204ENST00000465425 C20orf203Q8NBC4 194 aa13.48□□□□□ -0.25
SYNE4-204ENST00000465425 OPRPNQ99935 248 aaPredicted RBP13.48□□□□□ -0.25
SYNE4-204ENST00000465425 MXRA5Q9NR99 2828 aa13.48□□□□□ -0.25
SYNE4-204ENST00000465425 A0A0J9YY99 117 aa13.48□□□□□ -0.25
SYNE4-204ENST00000465425 RBMY1A1P0DJD3 496 aaKnown RBP13.48□□□□□ -0.25
SYNE4-204ENST00000465425 RBMY1CP0DJD4 496 aa13.48□□□□□ -0.25
SYNE4-204ENST00000465425 P0DMU3 169 aa13.48□□□□□ -0.25
SYNE4-204ENST00000465425 FAM231AP0DMU4 169 aa13.48□□□□□ -0.25
SYNE4-204ENST00000465425 FAM231CP0DMU5 169 aa13.48□□□□□ -0.25
SYNE4-204ENST00000465425 RBMY1FQ15415 496 aaKnown RBP13.48□□□□□ -0.25
SYNE4-204ENST00000465425 PEMTQ9UBM1 199 aa13.48□□□□□ -0.25
SYNE4-204ENST00000465425 LGALS3P17931 250 aaKnown RBP13.47□□□□□ -0.25
SYNE4-204ENST00000465425 KHDC1LQ5JSQ8 128 aa13.47□□□□□ -0.25
SYNE4-204ENST00000465425 IGHV3-73A0A0B4J1V6 119 aa13.47□□□□□ -0.25
SYNE4-204ENST00000465425 J3QQQ9 107 aa13.47□□□□□ -0.25
SYNE4-204ENST00000465425 TSPEAR-AS2P59090 65 aa13.47□□□□□ -0.25
SYNE4-204ENST00000465425 NFE4Q86UQ8 179 aa13.47□□□□□ -0.25
SYNE4-204ENST00000465425 LRRK2Q5S007 2527 aa13.46□□□□□ -0.25
SYNE4-204ENST00000465425 DUX3Q96PT4 197 aa13.46□□□□□ -0.25
SYNE4-204ENST00000465425 ZNF462Q96JM2 2506 aa13.46□□□□□ -0.26
SYNE4-204ENST00000465425 H3BMM0 161 aa13.46□□□□□ -0.26
SYNE4-204ENST00000465425 UBE2D1P51668 147 aa13.46□□□□□ -0.26
SYNE4-204ENST00000465425 WFDC2Q14508 124 aa13.46□□□□□ -0.26
SYNE4-204ENST00000465425 GAGE13Q4V321 117 aa13.46□□□□□ -0.26
SYNE4-204ENST00000465425 Q5PR19 223 aa13.46□□□□□ -0.26
SYNE4-204ENST00000465425 APOMO95445 188 aa13.45□□□□□ -0.26
SYNE4-204ENST00000465425 VCX2Q9H322 139 aa13.45□□□□□ -0.26
SYNE4-204ENST00000465425 SPANXB1Q9NS25 103 aaPredicted RBP13.45□□□□□ -0.26
SYNE4-204ENST00000465425 DEFB113Q30KQ7 82 aa13.44□□□□□ -0.26
SYNE4-204ENST00000465425 TMEM61Q8N0U2 210 aa13.44□□□□□ -0.26
SYNE4-204ENST00000465425 KRTAP10-9P60411 292 aa13.44□□□□□ -0.26
SYNE4-204ENST00000465425 SLC25A29Q8N8R3 303 aa13.44□□□□□ -0.26
SYNE4-204ENST00000465425 DYNLRB2Q8TF09 96 aa13.44□□□□□ -0.26
SYNE4-204ENST00000465425 ZFYVE26Q68DK2 2539 aa13.43□□□□□ -0.26
SYNE4-204ENST00000465425 A8MWV9 139 aa13.43□□□□□ -0.26
SYNE4-204ENST00000465425 Q8N2B8 174 aa13.43□□□□□ -0.26
SYNE4-204ENST00000465425 C4orf3Q8WVX3 66 aa13.43□□□□□ -0.26
SYNE4-204ENST00000465425 EDA2RQ9HAV5 297 aa13.43□□□□□ -0.26
SYNE4-204ENST00000465425 TNFRSF18Q9Y5U5 241 aa13.43□□□□□ -0.26
SYNE4-204ENST00000465425 IGLV4-3A0A075B6K6 122 aa13.42□□□□□ -0.26
SYNE4-204ENST00000465425 TRAV2A0A0B4J234 112 aa13.42□□□□□ -0.26
SYNE4-204ENST00000465425 TMEM223A0PJW6 202 aa13.42□□□□□ -0.26
SYNE4-204ENST00000465425 J3QR89 54 aa13.42□□□□□ -0.26
SYNE4-204ENST00000465425 M0R2P5 195 aa13.42□□□□□ -0.26
SYNE4-204ENST00000465425 MTURNQ8N3F0 131 aa13.42□□□□□ -0.26
SYNE4-204ENST00000465425 PTPN13Q12923 2485 aa13.42□□□□□ -0.26
SYNE4-204ENST00000465425 LOC107984156A0A0G2JMH3 177 aa13.42□□□□□ -0.26
SYNE4-204ENST00000465425 ZNF415Q09FC8 603 aa13.42□□□□□ -0.26
SYNE4-204ENST00000465425 ARL17AQ8IVW1 177 aa13.42□□□□□ -0.26
SYNE4-204ENST00000465425 NAV2Q8IVL1 2488 aa13.42□□□□□ -0.26
SYNE4-204ENST00000465425 A8MTW9 85 aa13.41□□□□□ -0.26
SYNE4-204ENST00000465425 LEPROTO15243 131 aa13.41□□□□□ -0.26
SYNE4-204ENST00000465425 TSPAN13O95857 204 aa13.41□□□□□ -0.26
SYNE4-204ENST00000465425 IGHV3-30P01768 117 aa13.41□□□□□ -0.26
SYNE4-204ENST00000465425 IGHV3-30-5P0DP03 117 aa13.41□□□□□ -0.26
SYNE4-204ENST00000465425 ETDBQ3ZM63 59 aa13.41□□□□□ -0.26
SYNE4-204ENST00000465425 RBMY1BA6NDE4 496 aaKnown RBP13.41□□□□□ -0.26
SYNE4-204ENST00000465425 RBMY1EA6NEQ0 496 aaKnown RBP13.41□□□□□ -0.26
SYNE4-204ENST00000465425 RHODO00212 210 aa13.41□□□□□ -0.26
SYNE4-204ENST00000465425 RBMY1DP0C7P1 496 aaKnown RBP13.41□□□□□ -0.26
SYNE4-204ENST00000465425 ZNF22P17026 224 aaPredicted RBP13.41□□□□□ -0.26
SYNE4-204ENST00000465425 PROK1P58294 105 aa13.41□□□□□ -0.26
SYNE4-204ENST00000465425 NDUFA11Q86Y39 141 aa13.41□□□□□ -0.26
SYNE4-204ENST00000465425 DLX4Q92988 240 aaPredicted RBP13.41□□□□□ -0.26
SYNE4-204ENST00000465425 Q96MF0 132 aa13.41□□□□□ -0.26
SYNE4-204ENST00000465425 SPAG8Q99932 426 aaPredicted RBP13.41□□□□□ -0.26
SYNE4-204ENST00000465425 CR1P17927 2039 aa13.4□□□□□ -0.26
SYNE4-204ENST00000465425 IGHV3-64A0A075B6Q5 118 aa13.4□□□□□ -0.26
SYNE4-204ENST00000465425 A0A0J9YXV3 536 aa13.4□□□□□ -0.26
SYNE4-204ENST00000465425 PRM2P04554 102 aa13.4□□□□□ -0.26
SYNE4-204ENST00000465425 CD28P10747 220 aa13.4□□□□□ -0.26
SYNE4-204ENST00000465425 SFTA2Q6UW10 78 aa13.4□□□□□ -0.26
SYNE4-204ENST00000465425 BBC3Q96PG8 261 aaPredicted RBP13.4□□□□□ -0.26
SYNE4-204ENST00000465425 AMELXQ99217 191 aa13.4□□□□□ -0.26
SYNE4-204ENST00000465425 LYRM7Q5U5X0 104 aa13.4□□□□□ -0.26
SYNE4-204ENST00000465425 SH2D6Q7Z4S9 175 aa13.4□□□□□ -0.26
SYNE4-204ENST00000465425 RAX2Q96IS3 184 aa13.4□□□□□ -0.26
SYNE4-204ENST00000465425 MAP6D1Q9H9H5 199 aa13.4□□□□□ -0.26
SYNE4-204ENST00000465425 PYGO1Q9Y3Y4 419 aa13.39□□□□□ -0.27
SYNE4-204ENST00000465425 LRRC75A-AS1Q8N1F1 130 aa13.39□□□□□ -0.27
SYNE4-204ENST00000465425 LINC01587Q99440 93 aa13.39□□□□□ -0.27
SYNE4-204ENST00000465425 TEX15Q9BXT5 2789 aa13.38□□□□□ -0.27
SYNE4-204ENST00000465425 PIK3CD-AS1Q5SR53 167 aa13.38□□□□□ -0.27
SYNE4-204ENST00000465425 PRO0461Q9UI25 63 aa13.38□□□□□ -0.27
SYNE4-204ENST00000465425 ABCA12Q86UK0 2595 aa13.38□□□□□ -0.27
SYNE4-204ENST00000465425 PSMB2P49721 201 aa13.38□□□□□ -0.27
SYNE4-204ENST00000465425 UBR5O95071 2799 aaPredicted RBP13.37□□□□□ -0.27
SYNE4-204ENST00000465425 USP24Q9UPU5 2620 aa13.37□□□□□ -0.27
SYNE4-204ENST00000465425 PRRC2AP48634 2157 aaKnown RBP13.37□□□□□ -0.27
SYNE4-204ENST00000465425 CFC1BP0CG36 223 aa13.37□□□□□ -0.27
SYNE4-204ENST00000465425 CFC1P0CG37 223 aa13.37□□□□□ -0.27
SYNE4-204ENST00000465425 MYO9AB2RTY4 2548 aa13.37□□□□□ -0.27
SYNE4-204ENST00000465425 INSP01308 110 aa13.36□□□□□ -0.27
SYNE4-204ENST00000465425 DEFB114Q30KQ6 69 aa13.36□□□□□ -0.27
SYNE4-204ENST00000465425 CFAP126Q5VTH2 177 aa13.36□□□□□ -0.27
SYNE4-204ENST00000465425 ZNF843Q8N446 348 aa13.36□□□□□ -0.27
SYNE4-204ENST00000465425 UBE2D3P61077 147 aa13.35□□□□□ -0.27
SYNE4-204ENST00000465425 UBE2D2P62837 147 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms