RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 OCIAD2Q56VL3 154 aa11.06□□□□□ -0.64
LDLR-202ENST00000455727 CLUHP3Q96NS8 147 aa11.06□□□□□ -0.64
LDLR-202ENST00000455727 TRAV25A0A0B4J276 109 aa11.05□□□□□ -0.64
LDLR-202ENST00000455727 GAGE12BA1L429 117 aa11.05□□□□□ -0.64
LDLR-202ENST00000455727 GAGE10A6NGK3 116 aa11.05□□□□□ -0.64
LDLR-202ENST00000455727 RPL39P62891 51 aaKnown RBP11.05□□□□□ -0.64
LDLR-202ENST00000455727 RNF151Q2KHN1 245 aa11.05□□□□□ -0.64
LDLR-202ENST00000455727 IGLV4-69A0A075B6H9 119 aa11.04□□□□□ -0.64
LDLR-202ENST00000455727 A8MWV9 139 aa11.03□□□□□ -0.64
LDLR-202ENST00000455727 H3BUT2 72 aa11.03□□□□□ -0.64
LDLR-202ENST00000455727 I3L3M4 83 aa11.03□□□□□ -0.64
LDLR-202ENST00000455727 M0R2P5 195 aa11.03□□□□□ -0.64
LDLR-202ENST00000455727 FHL3Q13643 280 aa11.03□□□□□ -0.64
LDLR-202ENST00000455727 CD300EQ496F6 205 aaPredicted RBP11.03□□□□□ -0.64
LDLR-202ENST00000455727 GTF2H5Q6ZYL4 71 aa11.03□□□□□ -0.64
LDLR-202ENST00000455727 PRADC1Q9BSG0 188 aa11.03□□□□□ -0.64
LDLR-202ENST00000455727 TLN2Q9Y4G6 2542 aa11.03□□□□□ -0.64
LDLR-202ENST00000455727 ZNF415Q09FC8 603 aa11.03□□□□□ -0.64
LDLR-202ENST00000455727 UFSP1Q6NVU6 142 aa11.03□□□□□ -0.64
LDLR-202ENST00000455727 RAX2Q96IS3 184 aa11.03□□□□□ -0.64
LDLR-202ENST00000455727 C11orf86A6NJI1 115 aa11.02□□□□□ -0.64
LDLR-202ENST00000455727 RAB37Q96AX2 223 aa11.02□□□□□ -0.64
LDLR-202ENST00000455727 P0DMU3 169 aa11.02□□□□□ -0.65
LDLR-202ENST00000455727 FAM231AP0DMU4 169 aa11.02□□□□□ -0.65
LDLR-202ENST00000455727 FAM231CP0DMU5 169 aa11.02□□□□□ -0.65
LDLR-202ENST00000455727 C20orf203Q8NBC4 194 aa11.02□□□□□ -0.65
LDLR-202ENST00000455727 ESM1Q9NQ30 184 aa11.02□□□□□ -0.65
LDLR-202ENST00000455727 AKAP9Q99996 3911 aa11.01□□□□□ -0.65
LDLR-202ENST00000455727 A0A1W2PPM0 123 aa11.01□□□□□ -0.65
LDLR-202ENST00000455727 HTN1P15515 57 aa11.01□□□□□ -0.65
LDLR-202ENST00000455727 HERVK_113P61574 105 aa11.01□□□□□ -0.65
LDLR-202ENST00000455727 PHLDA1Q8WV24 401 aaPredicted RBP11.01□□□□□ -0.65
LDLR-202ENST00000455727 TRBV7-3A0A075B6L6 115 aa11.01□□□□□ -0.65
LDLR-202ENST00000455727 DEFB104AQ8WTQ1 72 aa11.01□□□□□ -0.65
LDLR-202ENST00000455727 HIST1H4GQ99525 98 aa11.01□□□□□ -0.65
LDLR-202ENST00000455727 K7EP34 96 aa11□□□□□ -0.65
LDLR-202ENST00000455727 SPXQ9BT56 116 aa11□□□□□ -0.65
LDLR-202ENST00000455727 NBPF19A0A087WUL8 3843 aa11□□□□□ -0.65
LDLR-202ENST00000455727 CCL24O00175 119 aa11□□□□□ -0.65
LDLR-202ENST00000455727 INSP01308 110 aa11□□□□□ -0.65
LDLR-202ENST00000455727 KRTAP1-1Q07627 177 aa11□□□□□ -0.65
LDLR-202ENST00000455727 NACAE9PAV3 2078 aa11□□□□□ -0.65
LDLR-202ENST00000455727 SAMD5Q5TGI4 173 aa10.99□□□□□ -0.65
LDLR-202ENST00000455727 NFE4Q86UQ8 179 aa10.99□□□□□ -0.65
LDLR-202ENST00000455727 C11orf72Q8NBR9 251 aa10.99□□□□□ -0.65
LDLR-202ENST00000455727 LINC01587Q99440 93 aa10.99□□□□□ -0.65
LDLR-202ENST00000455727 NAA38Q9BRA0 125 aaKnown RBP10.99□□□□□ -0.65
LDLR-202ENST00000455727 C16orf95Q9H693 158 aa10.99□□□□□ -0.65
LDLR-202ENST00000455727 TENM4Q6N022 2769 aa10.99□□□□□ -0.65
LDLR-202ENST00000455727 K7ERU9 68 aa10.98□□□□□ -0.65
LDLR-202ENST00000455727 NHP2Q9NX24 153 aaKnown RBP10.98□□□□□ -0.65
LDLR-202ENST00000455727 FLNAP21333 2647 aaKnown RBP10.98□□□□□ -0.65
LDLR-202ENST00000455727 ZNF815PA8K554 130 aa10.98□□□□□ -0.65
LDLR-202ENST00000455727 BEAN1Q3B7T3 259 aa10.98□□□□□ -0.65
LDLR-202ENST00000455727 ODF3L2Q3SX64 289 aa10.98□□□□□ -0.65
LDLR-202ENST00000455727 VPS25Q9BRG1 176 aa10.98□□□□□ -0.65
LDLR-202ENST00000455727 SONP18583 2426 aaKnown RBP10.98□□□□□ -0.65
LDLR-202ENST00000455727 RHODO00212 210 aa10.97□□□□□ -0.65
LDLR-202ENST00000455727 CD28P10747 220 aa10.97□□□□□ -0.65
LDLR-202ENST00000455727 FABP2P12104 132 aa10.97□□□□□ -0.65
LDLR-202ENST00000455727 HIST2H2BCQ6DN03 193 aa10.97□□□□□ -0.65
LDLR-202ENST00000455727 HIST2H2BDQ6DRA6 164 aa10.97□□□□□ -0.65
LDLR-202ENST00000455727 ZNRF2Q8NHG8 242 aa10.97□□□□□ -0.65
LDLR-202ENST00000455727 RNASE1P07998 156 aaKnown RBP10.97□□□□□ -0.65
LDLR-202ENST00000455727 CFAP126Q5VTH2 177 aa10.97□□□□□ -0.65
LDLR-202ENST00000455727 OR5A1Q8NGJ0 315 aa10.97□□□□□ -0.65
LDLR-202ENST00000455727 PYGO1Q9Y3Y4 419 aa10.97□□□□□ -0.65
LDLR-202ENST00000455727 TSSC4Q9Y5U2 329 aaPredicted RBP10.97□□□□□ -0.65
LDLR-202ENST00000455727 PDZD2O15018 2839 aa10.97□□□□□ -0.65
LDLR-202ENST00000455727 A0A1B0GWB2 263 aa10.96□□□□□ -0.65
LDLR-202ENST00000455727 PRM2P04554 102 aa10.96□□□□□ -0.65
LDLR-202ENST00000455727 EMP1P54849 157 aa10.96□□□□□ -0.65
LDLR-202ENST00000455727 SCGB2A2Q13296 93 aa10.96□□□□□ -0.65
LDLR-202ENST00000455727 C12orf74Q32Q52 190 aa10.96□□□□□ -0.65
LDLR-202ENST00000455727 TNFRSF18Q9Y5U5 241 aa10.96□□□□□ -0.65
LDLR-202ENST00000455727 CHD6Q8TD26 2715 aa10.96□□□□□ -0.66
LDLR-202ENST00000455727 K7ERJ3 54 aa10.96□□□□□ -0.66
LDLR-202ENST00000455727 PLA2G2AP14555 144 aa10.96□□□□□ -0.66
LDLR-202ENST00000455727 CRYBA4P53673 196 aa10.96□□□□□ -0.66
LDLR-202ENST00000455727 SPCS1Q9Y6A9 102 aa10.96□□□□□ -0.66
LDLR-202ENST00000455727 IGHV3-73A0A0B4J1V6 119 aa10.95□□□□□ -0.66
LDLR-202ENST00000455727 PROK1P58294 105 aa10.95□□□□□ -0.66
LDLR-202ENST00000455727 TMEM170BQ5T4T1 132 aa10.95□□□□□ -0.66
LDLR-202ENST00000455727 YAE1D1Q9NRH1 226 aa10.95□□□□□ -0.66
LDLR-202ENST00000455727 A0A1W2PRX2 142 aa10.95□□□□□ -0.66
LDLR-202ENST00000455727 STHQ8IWL8 128 aa10.95□□□□□ -0.66
LDLR-202ENST00000455727 C11orf44Q8N8P7 122 aa10.95□□□□□ -0.66
LDLR-202ENST00000455727 LINC01006Q8NI28 216 aa10.95□□□□□ -0.66
LDLR-202ENST00000455727 DNAJC30Q96LL9 226 aa10.95□□□□□ -0.66
LDLR-202ENST00000455727 CITED2Q99967 270 aaPredicted RBP10.95□□□□□ -0.66
LDLR-202ENST00000455727 CCDC168Q8NDH2 2452 aa10.94□□□□□ -0.66
LDLR-202ENST00000455727 IGLV4-3A0A075B6K6 122 aa10.94□□□□□ -0.66
LDLR-202ENST00000455727 J3QKU1 62 aa10.94□□□□□ -0.66
LDLR-202ENST00000455727 IGHV3-53P01767 116 aa10.94□□□□□ -0.66
LDLR-202ENST00000455727 SCGB1D4Q6XE38 83 aa10.94□□□□□ -0.66
LDLR-202ENST00000455727 OPRPNQ99935 248 aaPredicted RBP10.94□□□□□ -0.66
LDLR-202ENST00000455727 VCX2Q9H322 139 aa10.94□□□□□ -0.66
LDLR-202ENST00000455727 RS1O15537 224 aa10.93□□□□□ -0.66
LDLR-202ENST00000455727 CMC4P56277 68 aaPredicted RBP10.93□□□□□ -0.66
LDLR-202ENST00000455727 IGLL5B9A064 214 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms