RNA–Protein interactions for RNA: ENST00000452489.6

PTPA-223, Transcript of protein phosphatase 2 phosphatase activator, human

TSL 1 (best) BASIC

Gene PTPA, Length 2,526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPA-223	ENST00000452489	TRAV21	A0A0B4J279	112 aa		13.88	□□□□□ -0.19
PTPA-223	ENST00000452489		A8MZ25	164 aa		13.88	□□□□□ -0.19
PTPA-223	ENST00000452489	DAND5	Q8N907	189 aa		13.88	□□□□□ -0.19
PTPA-223	ENST00000452489	RP1L1	Q8IWN7	2480 aa	Predicted RBP	13.88	□□□□□ -0.19
PTPA-223	ENST00000452489	IGHV1-69	P01742	117 aa		13.87	□□□□□ -0.19
PTPA-223	ENST00000452489	NPB	Q8NG41	125 aa		13.87	□□□□□ -0.19
PTPA-223	ENST00000452489	PEMT	Q9UBM1	199 aa		13.87	□□□□□ -0.19
PTPA-223	ENST00000452489	RNASE4	P34096	147 aa	Known RBP	13.86	□□□□□ -0.19
PTPA-223	ENST00000452489	C16orf92	Q96LL3	132 aa		13.86	□□□□□ -0.19
PTPA-223	ENST00000452489	PRRC2A	P48634	2157 aa	Known RBP	13.86	□□□□□ -0.19
PTPA-223	ENST00000452489	MRPL53	Q96EL3	112 aa	Known RBP	13.86	□□□□□ -0.19
PTPA-223	ENST00000452489	ADGRG4	Q8IZF6	3080 aa		13.85	□□□□□ -0.19
PTPA-223	ENST00000452489	TRBV27	A0A0K0K1C4	114 aa		13.85	□□□□□ -0.19
PTPA-223	ENST00000452489		M0R1W7	72 aa		13.85	□□□□□ -0.19
PTPA-223	ENST00000452489	KLRB1	Q12918	225 aa		13.85	□□□□□ -0.19
PTPA-223	ENST00000452489	C15orf32	Q32M92	178 aa		13.85	□□□□□ -0.19
PTPA-223	ENST00000452489	NDUFA12	Q9UI09	145 aa		13.85	□□□□□ -0.19
PTPA-223	ENST00000452489	TIRAP	P58753	221 aa		13.85	□□□□□ -0.19
PTPA-223	ENST00000452489	NUP37	Q8NFH4	326 aa		13.85	□□□□□ -0.19
PTPA-223	ENST00000452489	MBD3L4	A6NDZ8	208 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPA-223	ENST00000452489	MBD3L3	A6NE82	208 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPA-223	ENST00000452489	MBD3L5	A6NJ08	208 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPA-223	ENST00000452489	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPA-223	ENST00000452489	CITED2	Q99967	270 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPA-223	ENST00000452489	UPK3B	Q9BT76	320 aa		13.84	□□□□□ -0.19
PTPA-223	ENST00000452489	RPL18A	Q02543	176 aa	Known RBP	13.83	□□□□□ -0.2
PTPA-223	ENST00000452489	FAM74A4	Q5TZK3	123 aa		13.83	□□□□□ -0.2
PTPA-223	ENST00000452489	FDCSP	Q8NFU4	85 aa		13.82	□□□□□ -0.2
PTPA-223	ENST00000452489	C22orf24	Q9Y442	160 aa		13.82	□□□□□ -0.2
PTPA-223	ENST00000452489	IGLV4-3	A0A075B6K6	122 aa		13.82	□□□□□ -0.2
PTPA-223	ENST00000452489	CLEC19A	Q6UXS0	136 aa		13.82	□□□□□ -0.2
PTPA-223	ENST00000452489	PYGO1	Q9Y3Y4	419 aa		13.82	□□□□□ -0.2
PTPA-223	ENST00000452489	LYNX1	G3V0Z9	82 aa		13.81	□□□□□ -0.2
PTPA-223	ENST00000452489	LYNX1	P0DP58	116 aa		13.81	□□□□□ -0.2
PTPA-223	ENST00000452489	ABCA4	P78363	2273 aa		13.81	□□□□□ -0.2
PTPA-223	ENST00000452489	MED14OS	P0DP75	135 aa		13.81	□□□□□ -0.2
PTPA-223	ENST00000452489	SVEP1	Q4LDE5	3571 aa		13.8	□□□□□ -0.2
PTPA-223	ENST00000452489	IGHV3OR16-10	A0A075B7F0	116 aa		13.8	□□□□□ -0.2
PTPA-223	ENST00000452489	LENEP	Q9Y5L5	61 aa		13.8	□□□□□ -0.2
PTPA-223	ENST00000452489		A0A087WVE0	104 aa		13.8	□□□□□ -0.2
PTPA-223	ENST00000452489		F6UB75	175 aa		13.8	□□□□□ -0.2
PTPA-223	ENST00000452489	NXPH4	O95158	308 aa		13.8	□□□□□ -0.2
PTPA-223	ENST00000452489	BAALC-AS2	P0C853	105 aa		13.8	□□□□□ -0.2
PTPA-223	ENST00000452489	RPL11	P62913	178 aa	Known RBP	13.8	□□□□□ -0.2
PTPA-223	ENST00000452489	MRAP	Q8TCY5	172 aa		13.8	□□□□□ -0.2
PTPA-223	ENST00000452489	C10orf105	Q8TEF2	133 aa		13.8	□□□□□ -0.2
PTPA-223	ENST00000452489	ITLN2	Q8WWU7	325 aa	Predicted RBP	13.8	□□□□□ -0.2
PTPA-223	ENST00000452489	FAM215A	Q9Y5M1	114 aa		13.8	□□□□□ -0.2
PTPA-223	ENST00000452489	IGKV3D-7	A0A0C4DH55	119 aa		13.79	□□□□□ -0.2
PTPA-223	ENST00000452489	RNASE13	Q5GAN3	156 aa	Known RBP	13.79	□□□□□ -0.2
PTPA-223	ENST00000452489	SERP2	Q8N6R1	65 aa		13.79	□□□□□ -0.2
PTPA-223	ENST00000452489	LINC00477	Q96M19	166 aa		13.79	□□□□□ -0.2
PTPA-223	ENST00000452489	DPM3	Q9P2X0	92 aa		13.79	□□□□□ -0.2
PTPA-223	ENST00000452489	COX7A2L	O14548	114 aa		13.79	□□□□□ -0.2
PTPA-223	ENST00000452489	LPAL2	Q16609	132 aa		13.79	□□□□□ -0.2
PTPA-223	ENST00000452489	BSPH1	Q075Z2	132 aa		13.78	□□□□□ -0.2
PTPA-223	ENST00000452489	C20orf203	Q8NBC4	194 aa		13.78	□□□□□ -0.2
PTPA-223	ENST00000452489	CCDC140	Q96MF4	163 aa		13.78	□□□□□ -0.2
PTPA-223	ENST00000452489	NACA	E9PAV3	2078 aa		13.78	□□□□□ -0.2
PTPA-223	ENST00000452489	IGHV1-58	A0A0C4DH39	117 aa		13.78	□□□□□ -0.2
PTPA-223	ENST00000452489	BEAN1	Q3B7T3	259 aa		13.77	□□□□□ -0.21
PTPA-223	ENST00000452489		Q8N2B8	174 aa		13.77	□□□□□ -0.21
PTPA-223	ENST00000452489	RELN	P78509	3460 aa		13.77	□□□□□ -0.21
PTPA-223	ENST00000452489	ECSCR	Q19T08	205 aa		13.77	□□□□□ -0.21
PTPA-223	ENST00000452489	RNASE6	Q93091	150 aa	Known RBP	13.77	□□□□□ -0.21
PTPA-223	ENST00000452489	DYNLRB1	Q9NP97	96 aa		13.76	□□□□□ -0.21
PTPA-223	ENST00000452489	MUC3A	Q02505	3323 aa		13.76	□□□□□ -0.21
PTPA-223	ENST00000452489	IGHV7-81	A0A0B4J1V7	117 aa		13.75	□□□□□ -0.21
PTPA-223	ENST00000452489	TRBV6-5	A0A0K0K1A5	114 aa		13.75	□□□□□ -0.21
PTPA-223	ENST00000452489	CACNA1B	Q00975	2339 aa		13.75	□□□□□ -0.21
PTPA-223	ENST00000452489	UCN	P55089	124 aa		13.75	□□□□□ -0.21
PTPA-223	ENST00000452489	VSIG2	Q96IQ7	327 aa		13.74	□□□□□ -0.21
PTPA-223	ENST00000452489	C9orf139	Q6ZV77	190 aa		13.74	□□□□□ -0.21
PTPA-223	ENST00000452489	FAM104A	Q969W3	186 aa		13.74	□□□□□ -0.21
PTPA-223	ENST00000452489	FAM218A	Q96MZ4	157 aa		13.74	□□□□□ -0.21
PTPA-223	ENST00000452489	CD28	P10747	220 aa		13.73	□□□□□ -0.21
PTPA-223	ENST00000452489		M0QY20	66 aa		13.73	□□□□□ -0.21
PTPA-223	ENST00000452489	MRPS36	P82909	103 aa	Known RBP	13.73	□□□□□ -0.21
PTPA-223	ENST00000452489		A0A0U1RRA0	63 aa		13.72	□□□□□ -0.21
PTPA-223	ENST00000452489	LAMA5	O15230	3695 aa		13.72	□□□□□ -0.21
PTPA-223	ENST00000452489	SYNJ2BP	P57105	145 aa		13.71	□□□□□ -0.21
PTPA-223	ENST00000452489	FHL2	Q14192	279 aa		13.71	□□□□□ -0.21
PTPA-223	ENST00000452489	LINC01561	Q8N1V8	128 aa		13.71	□□□□□ -0.21
PTPA-223	ENST00000452489		Q9HAA7	133 aa		13.71	□□□□□ -0.21
PTPA-223	ENST00000452489		U3KQE9	123 aa		13.71	□□□□□ -0.21
PTPA-223	ENST00000452489	CNOT1	A5YKK6	2376 aa	Known RBP	13.71	□□□□□ -0.21
PTPA-223	ENST00000452489	DMXL1	Q9Y485	3027 aa		13.71	□□□□□ -0.22
PTPA-223	ENST00000452489	INAFM2	P0DMQ5	153 aa		13.7	□□□□□ -0.22
PTPA-223	ENST00000452489	USP17L23	D6RBM5	183 aa		13.7	□□□□□ -0.22
PTPA-223	ENST00000452489	IGKV3-7	A0A075B6H7	116 aa		13.69	□□□□□ -0.22
PTPA-223	ENST00000452489		J3QLI3	93 aa		13.69	□□□□□ -0.22
PTPA-223	ENST00000452489		K7ENP7	123 aa		13.69	□□□□□ -0.22
PTPA-223	ENST00000452489	C9orf129	Q5T035	196 aa	Known RBP	13.69	□□□□□ -0.22
PTPA-223	ENST00000452489	LINC00336	Q6ZUF6	198 aa		13.69	□□□□□ -0.22
PTPA-223	ENST00000452489		G3V318	75 aa		13.68	□□□□□ -0.22
PTPA-223	ENST00000452489	FAM110D	Q8TAY7	271 aa	Predicted RBP	13.68	□□□□□ -0.22
PTPA-223	ENST00000452489	PFN2	P35080	140 aa		13.68	□□□□□ -0.22
PTPA-223	ENST00000452489	LINC00308	Q8TCZ7	52 aa		13.68	□□□□□ -0.22
PTPA-223	ENST00000452489	MAL	P21145	153 aa		13.67	□□□□□ -0.22
PTPA-223	ENST00000452489	DCHS2	Q6V1P9	2916 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms