RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 TMEM95Q3KNT9 176 aa12.18□□□□□ -0.46
CLCNKA-203ENST00000439316 WFDC12Q8WWY7 111 aa12.18□□□□□ -0.46
CLCNKA-203ENST00000439316 GAGE13Q4V321 117 aa12.18□□□□□ -0.46
CLCNKA-203ENST00000439316 PGPEP1Q9NXJ5 209 aa12.18□□□□□ -0.46
CLCNKA-203ENST00000439316 F5H697 171 aa12.17□□□□□ -0.46
CLCNKA-203ENST00000439316 KLHL30-AS1Q8NEE0 82 aa12.17□□□□□ -0.46
CLCNKA-203ENST00000439316 A0A0J9YX75 114 aa12.16□□□□□ -0.46
CLCNKA-203ENST00000439316 EMP1P54849 157 aa12.16□□□□□ -0.46
CLCNKA-203ENST00000439316 A0A0J9YY99 117 aa12.16□□□□□ -0.46
CLCNKA-203ENST00000439316 TMEM238C9JI98 176 aa12.16□□□□□ -0.46
CLCNKA-203ENST00000439316 IGHV4-59P01825 116 aa12.16□□□□□ -0.46
CLCNKA-203ENST00000439316 ZNF688P0C7X2 276 aa12.16□□□□□ -0.46
CLCNKA-203ENST00000439316 SRSF9Q13242 221 aaKnown RBP eCLIP12.16□□□□□ -0.46
CLCNKA-203ENST00000439316 ZNF876PQ49A33 203 aa12.16□□□□□ -0.46
CLCNKA-203ENST00000439316 MRPL16Q9NX20 251 aaKnown RBP12.16□□□□□ -0.46
CLCNKA-203ENST00000439316 J3QR89 54 aa12.15□□□□□ -0.46
CLCNKA-203ENST00000439316 ETDBQ3ZM63 59 aa12.15□□□□□ -0.46
CLCNKA-203ENST00000439316 SH2D6Q7Z4S9 175 aa12.15□□□□□ -0.46
CLCNKA-203ENST00000439316 SYT8Q8NBV8 401 aa12.15□□□□□ -0.46
CLCNKA-203ENST00000439316 DEFB104AQ8WTQ1 72 aa12.15□□□□□ -0.46
CLCNKA-203ENST00000439316 TMEM89A2RUT3 159 aa12.14□□□□□ -0.47
CLCNKA-203ENST00000439316 K7EQG2 157 aa12.14□□□□□ -0.47
CLCNKA-203ENST00000439316 M0QY20 66 aa12.14□□□□□ -0.47
CLCNKA-203ENST00000439316 TSPEAR-AS2P59090 65 aa12.14□□□□□ -0.47
CLCNKA-203ENST00000439316 NSUN5P1Q3KNT7 163 aa12.14□□□□□ -0.47
CLCNKA-203ENST00000439316 MDFICQ9P1T7 246 aa12.14□□□□□ -0.47
CLCNKA-203ENST00000439316 RHOHQ15669 191 aa12.14□□□□□ -0.47
CLCNKA-203ENST00000439316 FAM74A4Q5TZK3 123 aa12.14□□□□□ -0.47
CLCNKA-203ENST00000439316 ZNRF2Q8NHG8 242 aa12.14□□□□□ -0.47
CLCNKA-203ENST00000439316 MTORP42345 2549 aa12.13□□□□□ -0.47
CLCNKA-203ENST00000439316 TRAV12-2A0A075B6T6 113 aa12.13□□□□□ -0.47
CLCNKA-203ENST00000439316 TSPAN13O95857 204 aa12.13□□□□□ -0.47
CLCNKA-203ENST00000439316 SNRPD3P62318 126 aaKnown RBP12.13□□□□□ -0.47
CLCNKA-203ENST00000439316 Q8N1Y9 231 aa12.13□□□□□ -0.47
CLCNKA-203ENST00000439316 MTURNQ8N3F0 131 aa12.13□□□□□ -0.47
CLCNKA-203ENST00000439316 SPAG8Q99932 426 aaPredicted RBP12.13□□□□□ -0.47
CLCNKA-203ENST00000439316 ZNF56Q15929 161 aa12.12□□□□□ -0.47
CLCNKA-203ENST00000439316 C10orf99Q6UWK7 81 aa12.12□□□□□ -0.47
CLCNKA-203ENST00000439316 AMELXQ99217 191 aa12.12□□□□□ -0.47
CLCNKA-203ENST00000439316 ZNF256Q9Y2P7 627 aaPredicted RBP12.12□□□□□ -0.47
CLCNKA-203ENST00000439316 TSSC4Q9Y5U2 329 aaPredicted RBP12.12□□□□□ -0.47
CLCNKA-203ENST00000439316 IGHV1OR15-1A0A075B7D0 117 aa12.12□□□□□ -0.47
CLCNKA-203ENST00000439316 TMEM170BQ5T4T1 132 aa12.12□□□□□ -0.47
CLCNKA-203ENST00000439316 TRPT1Q86TN4 253 aaKnown RBP12.12□□□□□ -0.47
CLCNKA-203ENST00000439316 NFE4Q86UQ8 179 aa12.12□□□□□ -0.47
CLCNKA-203ENST00000439316 DLX4Q92988 240 aaPredicted RBP12.12□□□□□ -0.47
CLCNKA-203ENST00000439316 IGKV3-20P01619 116 aa12.11□□□□□ -0.47
CLCNKA-203ENST00000439316 UBE2D3P61077 147 aa12.11□□□□□ -0.47
CLCNKA-203ENST00000439316 UBE2D2P62837 147 aa12.11□□□□□ -0.47
CLCNKA-203ENST00000439316 SPATA25Q9BR10 227 aa12.11□□□□□ -0.47
CLCNKA-203ENST00000439316 FLNBO75369 2602 aaKnown RBP12.11□□□□□ -0.47
CLCNKA-203ENST00000439316 OTOGQ6ZRI0 2925 aa12.11□□□□□ -0.47
CLCNKA-203ENST00000439316 GAGE12HA6NDE8 117 aa12.1□□□□□ -0.47
CLCNKA-203ENST00000439316 IGHV3-30P01768 117 aa12.1□□□□□ -0.47
CLCNKA-203ENST00000439316 IGHV3-30-5P0DP03 117 aa12.1□□□□□ -0.47
CLCNKA-203ENST00000439316 CFAP126Q5VTH2 177 aa12.1□□□□□ -0.47
CLCNKA-203ENST00000439316 Q6YL49 198 aa12.1□□□□□ -0.47
CLCNKA-203ENST00000439316 NDUFA11Q86Y39 141 aa12.1□□□□□ -0.47
CLCNKA-203ENST00000439316 SLC25A29Q8N8R3 303 aa12.1□□□□□ -0.47
CLCNKA-203ENST00000439316 SPINK13Q1W4C9 94 aa12.1□□□□□ -0.47
CLCNKA-203ENST00000439316 RNF152Q8N8N0 203 aa12.1□□□□□ -0.47
CLCNKA-203ENST00000439316 J3QQQ9 107 aa12.09□□□□□ -0.47
CLCNKA-203ENST00000439316 KRTAP1-1Q07627 177 aa12.09□□□□□ -0.47
CLCNKA-203ENST00000439316 SIGMAR1Q99720 223 aa12.09□□□□□ -0.47
CLCNKA-203ENST00000439316 APOMO95445 188 aa12.09□□□□□ -0.47
CLCNKA-203ENST00000439316 P0DMU3 169 aa12.09□□□□□ -0.47
CLCNKA-203ENST00000439316 FAM231AP0DMU4 169 aa12.09□□□□□ -0.47
CLCNKA-203ENST00000439316 FAM231CP0DMU5 169 aa12.09□□□□□ -0.47
CLCNKA-203ENST00000439316 SMCPP49901 116 aaPredicted RBP12.09□□□□□ -0.47
CLCNKA-203ENST00000439316 ATP6V0E2Q8NHE4 81 aa12.09□□□□□ -0.47
CLCNKA-203ENST00000439316 NF1P21359 2839 aa12.08□□□□□ -0.48
CLCNKA-203ENST00000439316 SCGB1A1P11684 91 aa12.08□□□□□ -0.48
CLCNKA-203ENST00000439316 AZU1P20160 251 aa12.08□□□□□ -0.48
CLCNKA-203ENST00000439316 LYRM7Q5U5X0 104 aa12.08□□□□□ -0.48
CLCNKA-203ENST00000439316 C20orf203Q8NBC4 194 aa12.08□□□□□ -0.48
CLCNKA-203ENST00000439316 GTSF1LQ9H1H1 148 aa12.08□□□□□ -0.48
CLCNKA-203ENST00000439316 VPREB3Q9UKI3 123 aa12.08□□□□□ -0.48
CLCNKA-203ENST00000439316 ANK3Q12955 4377 aaKnown RBP12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 TMEM223A0PJW6 202 aa12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 LGALS3P17931 250 aaKnown RBP12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 INSL3P51460 131 aa12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 SYNJ2BPP57105 145 aa12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 OPRPNQ99935 248 aaPredicted RBP12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 C1QTNF4Q9BXJ3 329 aa12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 LOC107984156A0A0G2JMH3 177 aa12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 I3L3M4 83 aa12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 LEPROTO15243 131 aa12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 CFC1BP0CG36 223 aa12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 CFC1P0CG37 223 aa12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 ARL17AQ8IVW1 177 aa12.07□□□□□ -0.48
CLCNKA-203ENST00000439316 TRGV11A0A075B6L2 103 aa12.06□□□□□ -0.48
CLCNKA-203ENST00000439316 PSMB2P49721 201 aa12.06□□□□□ -0.48
CLCNKA-203ENST00000439316 EDA2RQ9HAV5 297 aa12.05□□□□□ -0.48
CLCNKA-203ENST00000439316 YAE1D1Q9NRH1 226 aa12.05□□□□□ -0.48
CLCNKA-203ENST00000439316 CUBNO60494 3623 aa12.05□□□□□ -0.48
CLCNKA-203ENST00000439316 ZNF22P17026 224 aaPredicted RBP12.05□□□□□ -0.48
CLCNKA-203ENST00000439316 C10orf126Q8N4M7 172 aa12.05□□□□□ -0.48
CLCNKA-203ENST00000439316 TEX29Q8N6K0 151 aa12.05□□□□□ -0.48
CLCNKA-203ENST00000439316 DUX5Q96PT3 197 aa12.05□□□□□ -0.48
CLCNKA-203ENST00000439316 IGLV4-3A0A075B6K6 122 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms