RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ZNF56Q15929 161 aa8.39□□□□□ -1.07
USP4-205ENST00000431357 AMTNQ6UX39 209 aa8.39□□□□□ -1.07
USP4-205ENST00000431357 NFE4Q86UQ8 179 aa8.39□□□□□ -1.07
USP4-205ENST00000431357 KLHL30-AS1Q8NEE0 82 aa8.39□□□□□ -1.07
USP4-205ENST00000431357 DLX4Q92988 240 aaPredicted RBP8.39□□□□□ -1.07
USP4-205ENST00000431357 TRGV11A0A075B6L2 103 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 TMEM170BQ5T4T1 132 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 FAM74A4Q5TZK3 123 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 MDFICQ9P1T7 246 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 A4D1N5 150 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 J3QLI3 93 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 M0QXV9 152 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 IGHV4-59P01825 116 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 NDUFV3P56181 108 aaKnown RBP8.38□□□□□ -1.07
USP4-205ENST00000431357 DEFB112Q30KQ8 113 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 Q8N1Y9 231 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 SLC25A29Q8N8R3 303 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 PPDPFLQ8WWR9 84 aa8.38□□□□□ -1.07
USP4-205ENST00000431357 ZNF256Q9Y2P7 627 aaPredicted RBP8.38□□□□□ -1.07
USP4-205ENST00000431357 ELANEP08246 267 aa8.37□□□□□ -1.07
USP4-205ENST00000431357 LINC01356Q8N9X3 169 aa8.37□□□□□ -1.07
USP4-205ENST00000431357 CSDC2Q9Y534 153 aaKnown RBP8.37□□□□□ -1.07
USP4-205ENST00000431357 TRAV12-2A0A075B6T6 113 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 I3L3M4 83 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 J3QQQ9 107 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 LGALS3P17931 250 aaKnown RBP8.36□□□□□ -1.07
USP4-205ENST00000431357 EMP1P54849 157 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 ZNRF2Q8NHG8 242 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 DNAJC30Q96LL9 226 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 LEPROTO15243 131 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 IGKV3-20P01619 116 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 IGHV3-30P01768 117 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 IGHV3-30-5P0DP03 117 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 UBE2D3P61077 147 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 UBE2D2P62837 147 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 NDUFA11Q86Y39 141 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 C20orf203Q8NBC4 194 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 EDA2RQ9HAV5 297 aa8.36□□□□□ -1.07
USP4-205ENST00000431357 IFITM1P13164 125 aa8.35□□□□□ -1.07
USP4-205ENST00000431357 GAGE2BQ13066 116 aa8.35□□□□□ -1.07
USP4-205ENST00000431357 SPINK13Q1W4C9 94 aa8.35□□□□□ -1.07
USP4-205ENST00000431357 GAGE2EQ4V326 116 aa8.35□□□□□ -1.07
USP4-205ENST00000431357 TTC32Q5I0X7 151 aa8.35□□□□□ -1.07
USP4-205ENST00000431357 CFAP126Q5VTH2 177 aa8.35□□□□□ -1.07
USP4-205ENST00000431357 GAGE2DQ9UEU5 116 aa8.35□□□□□ -1.07
USP4-205ENST00000431357 TRBV20-1A0A075B6N2 111 aa8.35□□□□□ -1.07
USP4-205ENST00000431357 TMEM223A0PJW6 202 aa8.35□□□□□ -1.07
USP4-205ENST00000431357 SYNJ2BPP57105 145 aa8.35□□□□□ -1.07
USP4-205ENST00000431357 AKAP6Q13023 2319 aa8.34□□□□□ -1.07
USP4-205ENST00000431357 LOC107984156A0A0G2JMH3 177 aa8.34□□□□□ -1.07
USP4-205ENST00000431357 P0DMU3 169 aa8.34□□□□□ -1.07
USP4-205ENST00000431357 FAM231AP0DMU4 169 aa8.34□□□□□ -1.07
USP4-205ENST00000431357 FAM231CP0DMU5 169 aa8.34□□□□□ -1.07
USP4-205ENST00000431357 INSL3P51460 131 aa8.34□□□□□ -1.07
USP4-205ENST00000431357 TSPEAR-AS2P59090 65 aa8.34□□□□□ -1.07
USP4-205ENST00000431357 ARL17AQ8IVW1 177 aa8.34□□□□□ -1.07
USP4-205ENST00000431357 UBE2E2Q96LR5 201 aa8.34□□□□□ -1.07
USP4-205ENST00000431357 AMELXQ99217 191 aa8.34□□□□□ -1.07
USP4-205ENST00000431357 SPANXDQ9BXN6 97 aa8.34□□□□□ -1.07
USP4-205ENST00000431357 PSMB2P49721 201 aa8.33□□□□□ -1.08
USP4-205ENST00000431357 C10orf99Q6UWK7 81 aa8.33□□□□□ -1.08
USP4-205ENST00000431357 CFC1BP0CG36 223 aa8.33□□□□□ -1.08
USP4-205ENST00000431357 CFC1P0CG37 223 aa8.33□□□□□ -1.08
USP4-205ENST00000431357 C10orf126Q8N4M7 172 aa8.33□□□□□ -1.08
USP4-205ENST00000431357 DEFB104AQ8WTQ1 72 aa8.33□□□□□ -1.08
USP4-205ENST00000431357 PYGO1Q9Y3Y4 419 aa8.33□□□□□ -1.08
USP4-205ENST00000431357 CCDC179H3BU77 68 aa8.32□□□□□ -1.08
USP4-205ENST00000431357 HOXD3P31249 432 aaPredicted RBP8.32□□□□□ -1.08
USP4-205ENST00000431357 PIK3CD-AS1Q5SR53 167 aa8.32□□□□□ -1.08
USP4-205ENST00000431357 TEN1Q86WV5 123 aa8.32□□□□□ -1.08
USP4-205ENST00000431357 PPDPFQ9H3Y8 114 aa8.32□□□□□ -1.08
USP4-205ENST00000431357 PRO1854Q9UHT4 67 aa8.32□□□□□ -1.08
USP4-205ENST00000431357 IGLV4-3A0A075B6K6 122 aa8.32□□□□□ -1.08
USP4-205ENST00000431357 SMIM9A6NGZ8 99 aa8.32□□□□□ -1.08
USP4-205ENST00000431357 ZNF22P17026 224 aaPredicted RBP8.32□□□□□ -1.08
USP4-205ENST00000431357 TRAV2A0A0B4J234 112 aa8.31□□□□□ -1.08
USP4-205ENST00000431357 A8MTW9 85 aa8.31□□□□□ -1.08
USP4-205ENST00000431357 LRRC75A-AS1Q8N1F1 130 aa8.31□□□□□ -1.08
USP4-205ENST00000431357 SPTAN1Q13813 2472 aaKnown RBP8.31□□□□□ -1.08
USP4-205ENST00000431357 SNCGO76070 127 aa8.3□□□□□ -1.08
USP4-205ENST00000431357 TGFAP01135 160 aa8.3□□□□□ -1.08
USP4-205ENST00000431357 SMCPP49901 116 aaPredicted RBP8.3□□□□□ -1.08
USP4-205ENST00000431357 OPRPNQ99935 248 aaPredicted RBP8.3□□□□□ -1.08
USP4-205ENST00000431357 ZNF702PQ9H963 129 aa8.3□□□□□ -1.08
USP4-205ENST00000431357 A0A096LNT2 108 aa8.3□□□□□ -1.08
USP4-205ENST00000431357 A8MWV9 139 aa8.3□□□□□ -1.08
USP4-205ENST00000431357 Q6YL49 198 aa8.3□□□□□ -1.08
USP4-205ENST00000431357 SBSPONQ8IVN8 264 aa8.3□□□□□ -1.08
USP4-205ENST00000431357 SVEP1Q4LDE5 3571 aa8.29□□□□□ -1.08
USP4-205ENST00000431357 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.29□□□□□ -1.08
USP4-205ENST00000431357 A0A0B4J2C4 111 aa8.29□□□□□ -1.08
USP4-205ENST00000431357 DUX5Q96PT3 197 aa8.29□□□□□ -1.08
USP4-205ENST00000431357 A0A0J9YXV3 536 aa8.29□□□□□ -1.08
USP4-205ENST00000431357 TCL1BO95988 128 aa8.29□□□□□ -1.08
USP4-205ENST00000431357 FSHBP01225 129 aa8.29□□□□□ -1.08
USP4-205ENST00000431357 FHL3Q13643 280 aa8.29□□□□□ -1.08
USP4-205ENST00000431357 MEIG1Q5JSS6 88 aa8.29□□□□□ -1.08
USP4-205ENST00000431357 A0A1B0GX51 115 aa8.28□□□□□ -1.08
USP4-205ENST00000431357 M0R2P5 195 aa8.28□□□□□ -1.08
USP4-205ENST00000431357 SCGB1C2P0DMR2 95 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms