RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 MANBALQ9NQG1 85 aa7.57□□□□□ -1.2
SQSTM1-203ENST00000422245 F5H697 171 aa7.56□□□□□ -1.2
SQSTM1-203ENST00000422245 J3QL48 77 aa7.56□□□□□ -1.2
SQSTM1-203ENST00000422245 SMIM17P0DL12 118 aa7.56□□□□□ -1.2
SQSTM1-203ENST00000422245 RPL35P42766 123 aaKnown RBP7.56□□□□□ -1.2
SQSTM1-203ENST00000422245 LINC01620Q4KN68 170 aa7.56□□□□□ -1.2
SQSTM1-203ENST00000422245 MPV17L2Q567V2 206 aa7.56□□□□□ -1.2
SQSTM1-203ENST00000422245 TMUB2Q71RG4 321 aa7.56□□□□□ -1.2
SQSTM1-203ENST00000422245 C15orf54Q8N8G6 183 aa7.56□□□□□ -1.2
SQSTM1-203ENST00000422245 CHCHD5Q9BSY4 110 aa7.56□□□□□ -1.2
SQSTM1-203ENST00000422245 CHAC1Q9BUX1 264 aa7.56□□□□□ -1.2
SQSTM1-203ENST00000422245 VAX2Q9UIW0 290 aa7.56□□□□□ -1.2
SQSTM1-203ENST00000422245 MUC21A0A0G2JKD1 596 aa7.55□□□□□ -1.2
SQSTM1-203ENST00000422245 MUC21A0A140T8X8 626 aa7.55□□□□□ -1.2
SQSTM1-203ENST00000422245 ANGP03950 147 aaKnown RBP7.55□□□□□ -1.2
SQSTM1-203ENST00000422245 MIAQ16674 131 aa7.55□□□□□ -1.2
SQSTM1-203ENST00000422245 ENHOQ6UWT2 76 aa7.55□□□□□ -1.2
SQSTM1-203ENST00000422245 DEFB104AQ8WTQ1 72 aa7.55□□□□□ -1.2
SQSTM1-203ENST00000422245 TRAV1-1A0A0B4J248 108 aa7.54□□□□□ -1.2
SQSTM1-203ENST00000422245 RAB5CP51148 216 aa7.54□□□□□ -1.2
SQSTM1-203ENST00000422245 CENPWQ5EE01 88 aa7.54□□□□□ -1.2
SQSTM1-203ENST00000422245 SMIM12Q96EX1 92 aa7.54□□□□□ -1.2
SQSTM1-203ENST00000422245 DERL1Q9BUN8 251 aa7.54□□□□□ -1.2
SQSTM1-203ENST00000422245 GNG13Q9P2W3 67 aa7.54□□□□□ -1.2
SQSTM1-203ENST00000422245 KIF25-AS1Q9Y6Z4 181 aa7.54□□□□□ -1.2
SQSTM1-203ENST00000422245 TRBV25-1A0A075B6N4 114 aa7.53□□□□□ -1.2
SQSTM1-203ENST00000422245 TEX46H3BTG2 121 aa7.53□□□□□ -1.2
SQSTM1-203ENST00000422245 H7C1H1 209 aa7.53□□□□□ -1.2
SQSTM1-203ENST00000422245 HLA-DQA1P01909 254 aa7.53□□□□□ -1.2
SQSTM1-203ENST00000422245 RPS20P60866 119 aaKnown RBP7.53□□□□□ -1.2
SQSTM1-203ENST00000422245 EIF5AL1Q6IS14 154 aaKnown RBP7.53□□□□□ -1.2
SQSTM1-203ENST00000422245 FER1L6-AS1Q8NA97 138 aa7.53□□□□□ -1.2
SQSTM1-203ENST00000422245 TPPP3Q9BW30 176 aa7.53□□□□□ -1.2
SQSTM1-203ENST00000422245 KRTAP29-1A8MX34 341 aaPredicted RBP7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 USP17L23D6RBM5 183 aa7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 MGPP08493 103 aa7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 IGLC6P0CF74 106 aa7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 SSTP61278 116 aa7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 RBX1P62877 108 aa7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 CACNG7P62955 275 aa7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 IQCJQ1A5X6 159 aa7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 NTM-AS1Q6ZSK4 140 aa7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 OR2D3Q8NGH3 330 aa7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 CIRBP-AS1Q8TBR5 109 aa7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 DAZAP1Q96EP5 407 aaKnown RBP7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 PRR34Q9NV39 138 aa7.52□□□□□ -1.21
SQSTM1-203ENST00000422245 IGHV1-24A0A0C4DH33 117 aa7.51□□□□□ -1.21
SQSTM1-203ENST00000422245 XKRY2A2RUG3 117 aa7.51□□□□□ -1.21
SQSTM1-203ENST00000422245 M0QY20 66 aa7.51□□□□□ -1.21
SQSTM1-203ENST00000422245 PDE6DO43924 150 aa7.51□□□□□ -1.21
SQSTM1-203ENST00000422245 IGLV2-8P01709 118 aa7.51□□□□□ -1.21
SQSTM1-203ENST00000422245 GNG4P50150 75 aa7.51□□□□□ -1.21
SQSTM1-203ENST00000422245 CCL20P78556 96 aa7.51□□□□□ -1.21
SQSTM1-203ENST00000422245 BIN3Q9NQY0 253 aa7.51□□□□□ -1.21
SQSTM1-203ENST00000422245 C19orf71A6NCJ1 209 aa7.5□□□□□ -1.21
SQSTM1-203ENST00000422245 F2Z2F3 143 aa7.5□□□□□ -1.21
SQSTM1-203ENST00000422245 IFNA1P01562 189 aa7.5□□□□□ -1.21
SQSTM1-203ENST00000422245 P01737 135 aa7.5□□□□□ -1.21
SQSTM1-203ENST00000422245 GZMBP10144 247 aa7.5□□□□□ -1.21
SQSTM1-203ENST00000422245 MEF2BQ02080 365 aaPredicted RBP7.5□□□□□ -1.21
SQSTM1-203ENST00000422245 GAGE6Q13070 117 aa7.5□□□□□ -1.21
SQSTM1-203ENST00000422245 SUMO4Q6EEV6 95 aa7.5□□□□□ -1.21
SQSTM1-203ENST00000422245 CLPSL2Q6UWE3 100 aa7.5□□□□□ -1.21
SQSTM1-203ENST00000422245 TRGC1P0CF51 173 aa7.49□□□□□ -1.21
SQSTM1-203ENST00000422245 SULT1A2P50226 295 aa7.49□□□□□ -1.21
SQSTM1-203ENST00000422245 DGAT2L7PQ6IED9 249 aa7.49□□□□□ -1.21
SQSTM1-203ENST00000422245 LINC00269Q8N2A0 174 aa7.49□□□□□ -1.21
SQSTM1-203ENST00000422245 PRSS1P07477 247 aa7.48□□□□□ -1.21
SQSTM1-203ENST00000422245 BCL2P10415 239 aa7.48□□□□□ -1.21
SQSTM1-203ENST00000422245 KRTAP10-4P60372 401 aaPredicted RBP7.48□□□□□ -1.21
SQSTM1-203ENST00000422245 REG3AQ06141 175 aa7.48□□□□□ -1.21
SQSTM1-203ENST00000422245 KRTAP26-1Q6PEX3 210 aa7.48□□□□□ -1.21
SQSTM1-203ENST00000422245 RASL11AQ6T310 242 aa7.48□□□□□ -1.21
SQSTM1-203ENST00000422245 PGLYRP4Q96LB8 373 aa7.48□□□□□ -1.21
SQSTM1-203ENST00000422245 TMEM243Q9BU79 118 aa7.48□□□□□ -1.21
SQSTM1-203ENST00000422245 TRBV20OR9-2A0A075B6H5 130 aa7.47□□□□□ -1.21
SQSTM1-203ENST00000422245 RAB19A4D1S5 217 aa7.47□□□□□ -1.21
SQSTM1-203ENST00000422245 TAGLN2P37802 199 aaKnown RBP7.47□□□□□ -1.21
SQSTM1-203ENST00000422245 CTRLP40313 264 aa7.47□□□□□ -1.21
SQSTM1-203ENST00000422245 NKX2-5P52952 324 aaPredicted RBP7.47□□□□□ -1.21
SQSTM1-203ENST00000422245 C9orf163Q8N9P6 203 aa7.47□□□□□ -1.21
SQSTM1-203ENST00000422245 CLRN3Q8NCR9 226 aa7.47□□□□□ -1.21
SQSTM1-203ENST00000422245 DPH3P1Q9H4G8 78 aa7.47□□□□□ -1.21
SQSTM1-203ENST00000422245 MED9Q9NWA0 146 aa7.47□□□□□ -1.21
SQSTM1-203ENST00000422245 TRAV8-4A0A0B4J246 113 aa7.46□□□□□ -1.22
SQSTM1-203ENST00000422245 A0A1B0GUV1 79 aa7.46□□□□□ -1.22
SQSTM1-203ENST00000422245 WDR73Q6P4I2 378 aa7.46□□□□□ -1.22
SQSTM1-203ENST00000422245 LYZL1Q6UWQ5 148 aa7.46□□□□□ -1.22
SQSTM1-203ENST00000422245 NIT2Q9NQR4 276 aa7.46□□□□□ -1.22
SQSTM1-203ENST00000422245 OXTP01178 125 aa7.45□□□□□ -1.22
SQSTM1-203ENST00000422245 RPL37AP61513 92 aaKnown RBP7.45□□□□□ -1.22
SQSTM1-203ENST00000422245 CNBPP62633 177 aaKnown RBP7.45□□□□□ -1.22
SQSTM1-203ENST00000422245 COTL1Q14019 142 aa7.45□□□□□ -1.22
SQSTM1-203ENST00000422245 SLC51BQ86UW2 128 aa7.45□□□□□ -1.22
SQSTM1-203ENST00000422245 TCTE3Q8IZS6 198 aa7.45□□□□□ -1.22
SQSTM1-203ENST00000422245 C9orf62Q8N4C0 152 aa7.45□□□□□ -1.22
SQSTM1-203ENST00000422245 C20orf203Q8NBC4 194 aa7.45□□□□□ -1.22
SQSTM1-203ENST00000422245 CNFNQ9BYD5 112 aa7.45□□□□□ -1.22
SQSTM1-203ENST00000422245 IGLV10-54A0A075B6I4 117 aa7.44□□□□□ -1.22
SQSTM1-203ENST00000422245 UBE2L6O14933 153 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms