RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 H3BNG1 76 aa9.99□□□□□ -0.81
SF3B1-204ENST00000414963 NPYP01303 97 aa9.99□□□□□ -0.81
SF3B1-204ENST00000414963 RPL32P62910 135 aaKnown RBP9.99□□□□□ -0.81
SF3B1-204ENST00000414963 OR10J3Q5JRS4 329 aa9.99□□□□□ -0.81
SF3B1-204ENST00000414963 RPL39LQ96EH5 51 aaKnown RBP9.99□□□□□ -0.81
SF3B1-204ENST00000414963 VSIG2Q96IQ7 327 aa9.99□□□□□ -0.81
SF3B1-204ENST00000414963 Q9UF83 564 aa9.99□□□□□ -0.81
SF3B1-204ENST00000414963 DEFB131BA0A096LNP1 70 aa9.98□□□□□ -0.81
SF3B1-204ENST00000414963 PAX4O43316 350 aa9.98□□□□□ -0.81
SF3B1-204ENST00000414963 P0DMU3 169 aa9.98□□□□□ -0.81
SF3B1-204ENST00000414963 FAM231AP0DMU4 169 aa9.98□□□□□ -0.81
SF3B1-204ENST00000414963 FAM231CP0DMU5 169 aa9.98□□□□□ -0.81
SF3B1-204ENST00000414963 HTN3P15516 51 aa9.98□□□□□ -0.81
SF3B1-204ENST00000414963 NEXN-AS1Q8NBZ9 246 aa9.98□□□□□ -0.81
SF3B1-204ENST00000414963 TRBV7-3A0A075B6L6 115 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 HIST1H2BKO60814 126 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 HIST1H2BJP06899 126 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 LINC00694P0DN24 101 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 HIST1H2BOP23527 126 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 HIST1H2BBP33778 126 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 POLR2KP53803 58 aaKnown RBP9.97□□□□□ -0.81
SF3B1-204ENST00000414963 HIST1H2BDP58876 126 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 SUMO2P61956 95 aaKnown RBP9.97□□□□□ -0.81
SF3B1-204ENST00000414963 HIST1H2BCP62807 126 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 RPL36AP83881 106 aaKnown RBP9.97□□□□□ -0.81
SF3B1-204ENST00000414963 Q0VG73 95 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 HIST2H2BEQ16778 126 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.97□□□□□ -0.81
SF3B1-204ENST00000414963 C18orf32Q8TCD1 76 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 HIST1H2BHQ93079 126 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 RPL36ALQ969Q0 106 aaKnown RBP9.97□□□□□ -0.81
SF3B1-204ENST00000414963 HIST1H2BNQ99877 126 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 HIST1H2BMQ99879 126 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 ST20Q9HBF5 79 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 TNFRSF18Q9Y5U5 241 aa9.97□□□□□ -0.81
SF3B1-204ENST00000414963 TRAV26-1A0A087WT03 109 aa9.96□□□□□ -0.82
SF3B1-204ENST00000414963 TMEM70Q9BUB7 260 aa9.96□□□□□ -0.82
SF3B1-204ENST00000414963 MAP1LC3AQ9H492 121 aa9.96□□□□□ -0.82
SF3B1-204ENST00000414963 IGLV2-18A0A075B6J9 118 aa9.95□□□□□ -0.82
SF3B1-204ENST00000414963 TRBV27A0A0K0K1C4 114 aa9.95□□□□□ -0.82
SF3B1-204ENST00000414963 SDHAF1A6NFY7 115 aa9.95□□□□□ -0.82
SF3B1-204ENST00000414963 VCYO14598 125 aa9.95□□□□□ -0.82
SF3B1-204ENST00000414963 GYPEP15421 78 aa9.95□□□□□ -0.82
SF3B1-204ENST00000414963 RAB5BP61020 215 aa9.95□□□□□ -0.82
SF3B1-204ENST00000414963 UBE2D3P61077 147 aa9.95□□□□□ -0.82
SF3B1-204ENST00000414963 UBE2D2P62837 147 aa9.95□□□□□ -0.82
SF3B1-204ENST00000414963 ZNRF2Q8NHG8 242 aa9.95□□□□□ -0.82
SF3B1-204ENST00000414963 PHLDA1Q8WV24 401 aaPredicted RBP9.95□□□□□ -0.82
SF3B1-204ENST00000414963 LOC100131303A0A0U1RQF7 123 aa9.94□□□□□ -0.82
SF3B1-204ENST00000414963 SMIM2Q9BVW6 85 aa9.94□□□□□ -0.82
SF3B1-204ENST00000414963 NXT2Q9NPJ8 142 aaKnown RBP9.94□□□□□ -0.82
SF3B1-204ENST00000414963 A0A0J9YY99 117 aa9.93□□□□□ -0.82
SF3B1-204ENST00000414963 GAGE12JA6NER3 117 aa9.93□□□□□ -0.82
SF3B1-204ENST00000414963 LINC01546A6NGU7 62 aa9.93□□□□□ -0.82
SF3B1-204ENST00000414963 PMCHP20382 165 aa9.93□□□□□ -0.82
SF3B1-204ENST00000414963 GAGE1Q13065 139 aa9.93□□□□□ -0.82
SF3B1-204ENST00000414963 GAGE4Q13068 117 aa9.93□□□□□ -0.82
SF3B1-204ENST00000414963 GAGE5Q13069 117 aa9.93□□□□□ -0.82
SF3B1-204ENST00000414963 MRPL23Q16540 153 aaKnown RBP9.93□□□□□ -0.82
SF3B1-204ENST00000414963 GAGE13Q4V321 117 aa9.93□□□□□ -0.82
SF3B1-204ENST00000414963 SH2D6Q7Z4S9 175 aa9.93□□□□□ -0.82
SF3B1-204ENST00000414963 DAZ4Q86SG3 579 aaKnown RBP9.93□□□□□ -0.82
SF3B1-204ENST00000414963 Q8N8P6 123 aa9.93□□□□□ -0.82
SF3B1-204ENST00000414963 DAZ3Q9NR90 486 aaKnown RBP9.93□□□□□ -0.82
SF3B1-204ENST00000414963 LOC389332A0A1B0GUA5 103 aa9.92□□□□□ -0.82
SF3B1-204ENST00000414963 I3L3M4 83 aa9.92□□□□□ -0.82
SF3B1-204ENST00000414963 K7EMI3 77 aa9.92□□□□□ -0.82
SF3B1-204ENST00000414963 IFI27P40305 119 aaPredicted RBP9.92□□□□□ -0.82
SF3B1-204ENST00000414963 IQCJQ1A5X6 159 aa9.92□□□□□ -0.82
SF3B1-204ENST00000414963 COA6Q5JTJ3 125 aaKnown RBP9.92□□□□□ -0.82
SF3B1-204ENST00000414963 PRSS3P2Q8NHM4 247 aa9.92□□□□□ -0.82
SF3B1-204ENST00000414963 ICOSQ9Y6W8 199 aa9.92□□□□□ -0.82
SF3B1-204ENST00000414963 A0A096LPF7 62 aa9.91□□□□□ -0.82
SF3B1-204ENST00000414963 TCAPO15273 167 aa9.91□□□□□ -0.82
SF3B1-204ENST00000414963 CEMP1Q6PRD7 247 aaPredicted RBP9.91□□□□□ -0.82
SF3B1-204ENST00000414963 NIT1Q86X76 327 aa9.91□□□□□ -0.82
SF3B1-204ENST00000414963 TGP01266 2768 aa9.91□□□□□ -0.82
SF3B1-204ENST00000414963 LINC00614P0C842 121 aa9.9□□□□□ -0.82
SF3B1-204ENST00000414963 BAGE3Q86Y29 109 aa9.9□□□□□ -0.82
SF3B1-204ENST00000414963 C15orf53Q8NAA6 179 aa9.9□□□□□ -0.82
SF3B1-204ENST00000414963 ATP6V0E2Q8NHE4 81 aa9.9□□□□□ -0.82
SF3B1-204ENST00000414963 CHCHD1Q96BP2 118 aaKnown RBP9.9□□□□□ -0.82
SF3B1-204ENST00000414963 URB1-AS1Q96HZ7 61 aa9.9□□□□□ -0.82
SF3B1-204ENST00000414963 KIR2DL4Q99706 377 aa9.9□□□□□ -0.82
SF3B1-204ENST00000414963 GTSF1LQ9H1H1 148 aa9.9□□□□□ -0.82
SF3B1-204ENST00000414963 NUPR2A6NF83 97 aa9.89□□□□□ -0.83
SF3B1-204ENST00000414963 TSHBP01222 138 aa9.89□□□□□ -0.83
SF3B1-204ENST00000414963 TIRAPP58753 221 aa9.89□□□□□ -0.83
SF3B1-204ENST00000414963 TMEM97Q5BJF2 176 aa9.89□□□□□ -0.83
SF3B1-204ENST00000414963 FA2HQ7L5A8 372 aa9.89□□□□□ -0.83
SF3B1-204ENST00000414963 NEGR1Q7Z3B1 354 aa9.89□□□□□ -0.83
SF3B1-204ENST00000414963 LINC00310P59036 64 aa9.88□□□□□ -0.83
SF3B1-204ENST00000414963 IGHV3-38A0A0C4DH36 116 aa9.87□□□□□ -0.83
SF3B1-204ENST00000414963 SERF1AO75920 110 aa9.87□□□□□ -0.83
SF3B1-204ENST00000414963 ESDP10768 282 aa9.87□□□□□ -0.83
SF3B1-204ENST00000414963 NDUFA6P56556 154 aa9.87□□□□□ -0.83
SF3B1-204ENST00000414963 COTL1Q14019 142 aa9.87□□□□□ -0.83
SF3B1-204ENST00000414963 LAGE3Q14657 143 aa9.87□□□□□ -0.83
SF3B1-204ENST00000414963 NTM-AS1Q6ZSK4 140 aa9.87□□□□□ -0.83
SF3B1-204ENST00000414963 WWC2-AS2Q96NR7 200 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 1308.3 ms