RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 LINC01587Q99440 93 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 C12orf57Q99622 126 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 HIST1H2BNQ99877 126 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 HIST1H2BMQ99879 126 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 PAXXQ9BUH6 204 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 DERL1Q9BUN8 251 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 OR51M1Q9H341 326 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 TENM2Q9NT68 2774 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 TRBV20OR9-2A0A075B6H5 130 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 TRBV19A0A075B6N1 114 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 TRAV8-2A0A0B4J237 113 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 ZNF705FA8MVS1 300 aaPredicted RBP4.44□□□□□ -1.7
USP40-202ENST00000409945 LINC00587B1AMM8 73 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 GIG44P09565 113 aaPredicted RBP4.44□□□□□ -1.7
USP40-202ENST00000409945 NBEAP1P0C6P0 100 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 ZNF705DP0CH99 300 aaPredicted RBP4.44□□□□□ -1.7
USP40-202ENST00000409945 ZNF705BP0CI00 300 aaPredicted RBP4.44□□□□□ -1.7
USP40-202ENST00000409945 GNG4P50150 75 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 RPL19P84098 196 aaKnown RBP4.44□□□□□ -1.7
USP40-202ENST00000409945 TMEM78Q5T7P6 136 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 LYPD1Q8N2G4 141 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 PTH2Q96A98 100 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 FAM167A-AS1Q96KT0 104 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 LINC00477Q96M19 166 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 SLC25A2Q9BXI2 301 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 TRAV5A0A0B4J249 113 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 A8MTW9 85 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 IGLL5B9A064 214 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 H3BTX0 84 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 M0R2Z0 102 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 MRPS12O15235 138 aaKnown RBP4.44□□□□□ -1.7
USP40-202ENST00000409945 HSBP1O75506 76 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 LY6G6CO95867 125 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 SNRPCP09234 159 aaKnown RBP4.44□□□□□ -1.7
USP40-202ENST00000409945 OR10J4P0C629 311 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 RBMY1A1P0DJD3 496 aaKnown RBP4.44□□□□□ -1.7
USP40-202ENST00000409945 RBMY1CP0DJD4 496 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 NDUFA6P56556 154 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 TAS2R60P59551 318 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 DEFB1P60022 68 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 DAD1P61803 113 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 RBMY1FQ15415 496 aaKnown RBP4.44□□□□□ -1.7
USP40-202ENST00000409945 ZNF493Q6ZR52 646 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 CMTM2Q8TAZ6 248 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 C16orf74Q96GX8 76 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 ODF3Q96PU9 254 aa4.44□□□□□ -1.7
USP40-202ENST00000409945 DEFB131BA0A096LNP1 70 aa4.43□□□□□ -1.7
USP40-202ENST00000409945 LYRM9A8MSI8 78 aa4.43□□□□□ -1.7
USP40-202ENST00000409945 GGTLC3B5MD39 225 aa4.43□□□□□ -1.7
USP40-202ENST00000409945 PHOX2AO14813 284 aa4.43□□□□□ -1.7
USP40-202ENST00000409945 TRGC1P0CF51 173 aa4.43□□□□□ -1.7
USP40-202ENST00000409945 HTN1P15515 57 aa4.43□□□□□ -1.7
USP40-202ENST00000409945 S100A2P29034 98 aa4.43□□□□□ -1.7
USP40-202ENST00000409945 POM121L12Q8N7R1 296 aa4.43□□□□□ -1.7
USP40-202ENST00000409945 FRZBQ92765 325 aa4.43□□□□□ -1.7
USP40-202ENST00000409945 SMIM12Q96EX1 92 aa4.43□□□□□ -1.7
USP40-202ENST00000409945 ZNF586Q9NXT0 402 aa4.43□□□□□ -1.7
USP40-202ENST00000409945 TRAV12-2A0A075B6T6 113 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 SLC17A3O00476 420 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 SLC25A5P05141 298 aaKnown RBP4.42□□□□□ -1.7
USP40-202ENST00000409945 GPX1P07203 203 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 PYYP10082 97 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 CENPWQ5EE01 88 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 AMTNQ6UX39 209 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 LINC01561Q8N1V8 128 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 FXYD5Q96DB9 178 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 OSTCQ9NRP0 149 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 IL36BQ9NZH7 164 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 KMT2CQ8NEZ4 4911 aaKnown RBP4.42□□□□□ -1.7
USP40-202ENST00000409945 GATA1P15976 413 aaPredicted RBP4.42□□□□□ -1.7
USP40-202ENST00000409945 RANP62826 216 aaKnown RBP4.42□□□□□ -1.7
USP40-202ENST00000409945 RBX1P62877 108 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 COA6Q5JTJ3 125 aaKnown RBP4.42□□□□□ -1.7
USP40-202ENST00000409945 FAM222AQ5U5X8 452 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 LGALS9CQ6DKI2 356 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 C1orf158Q8N1D5 194 aa4.42□□□□□ -1.7
USP40-202ENST00000409945 TMEM263Q8WUH6 116 aaKnown RBP4.42□□□□□ -1.7
USP40-202ENST00000409945 TIMM8BQ9Y5J9 83 aaPredicted RBP4.42□□□□□ -1.7
USP40-202ENST00000409945 RBAKDNA6NC62 111 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 ZNF705GA8MUZ8 300 aaPredicted RBP4.41□□□□□ -1.7
USP40-202ENST00000409945 PEX7O00628 323 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 GCGP01275 180 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 P0DMU3 169 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 FAM231AP0DMU4 169 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 FAM231CP0DMU5 169 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 HTN3P15516 51 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 LINC00336Q6ZUF6 198 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 TMEM183AQ8IXX5 376 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 HIST3H2BBQ8N257 126 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 EXOC3-AS1Q8N2X6 119 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 C5orf17Q8NAS9 161 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 RASL10AQ92737 203 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 NDFIP1Q9BT67 221 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 CSMD3Q7Z407 3707 aa4.41□□□□□ -1.7
USP40-202ENST00000409945 TRAV12-3A0A0B4J271 114 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 C7orf71A4D174 169 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 M0R3E3 92 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 TCAPO15273 167 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 CRXO43186 299 aaPredicted RBP4.4□□□□□ -1.7
USP40-202ENST00000409945 MT-ND6P03923 174 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms