RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MIFP14174 115 aa5.63□□□□□ -1.51
SCN9A-202ENST00000409435 IGHV4-28A0A0C4DH34 117 aa5.63□□□□□ -1.51
SCN9A-202ENST00000409435 IGLC6P0CF74 106 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 PCP2Q8IVA1 136 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 DENND4AQ7Z401 1863 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 TEX22C9J3V5 150 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 OPRPNQ99935 248 aaPredicted RBP5.62□□□□□ -1.51
SCN9A-202ENST00000409435 MRPS36P82909 103 aaKnown RBP5.62□□□□□ -1.51
SCN9A-202ENST00000409435 ZNF702PQ9H963 129 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 USP17L23D6RBM5 183 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 K7EMI3 77 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 HIGD2BQ4VC39 106 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 COA6Q5JTJ3 125 aaKnown RBP5.62□□□□□ -1.51
SCN9A-202ENST00000409435 CDPF1Q6NVV7 123 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 Q8TAT8 98 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 ZNF503Q96F45 646 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 C16orf95Q9H693 158 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 C9JQL5 133 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 Q6ZQT7 251 aa5.62□□□□□ -1.51
SCN9A-202ENST00000409435 TIRAPP58753 221 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 TMEM61Q8N0U2 210 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 SERP2Q8N6R1 65 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 ZNRF2Q8NHG8 242 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 C20orf78Q9BR46 151 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 V9GYV3 84 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 SONP18583 2426 aaKnown RBP5.61□□□□□ -1.51
SCN9A-202ENST00000409435 K7EMT4 169 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 LHFPL1Q86WI0 220 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 NAV3Q8IVL0 2385 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 SDHAF1A6NFY7 115 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 FSTL3O95633 263 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 GTSF1Q8WW33 167 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 SHANK2-AS3Q9BTD1 123 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 TPSG1Q9NRR2 321 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 LRCOL1A6NCL2 159 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 CASC2Q6XLA1 102 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 DEFB105AQ8NG35 78 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 COX7B2Q8TF08 81 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 LGALS9O00182 355 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 ARTNQ5T4W7 220 aa5.61□□□□□ -1.51
SCN9A-202ENST00000409435 PTPRSQ13332 1948 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 A0A0J9YWU9 116 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 RPL18AQ02543 176 aaKnown RBP5.6□□□□□ -1.51
SCN9A-202ENST00000409435 NAV2Q8IVL1 2488 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 RBX1P62877 108 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 C11orf53Q8IXP5 236 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 NDUFA4L2Q9NRX3 87 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 IGKV1-39P01597 117 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 IGKV1D-39P04432 117 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 LINC00694P0DN24 101 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 IGHV4-30-4P0DP06 118 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 IMUPQ9GZP8 106 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 C15orf65H3BRN8 121 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 FRMD6-AS1P0C7T7 363 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 UBE2D1P51668 147 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 FXYD2P54710 66 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 LINC00205P59089 165 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 SERP1Q9Y6X1 66 aa5.6□□□□□ -1.51
SCN9A-202ENST00000409435 GATA1P15976 413 aaPredicted RBP5.59□□□□□ -1.51
SCN9A-202ENST00000409435 C1orf134Q5TEV5 83 aa5.59□□□□□ -1.51
SCN9A-202ENST00000409435 C22orf34Q6ZV56 151 aa5.59□□□□□ -1.51
SCN9A-202ENST00000409435 HHLA3Q9XRX5 114 aa5.59□□□□□ -1.51
SCN9A-202ENST00000409435 TMEM256-PLSCR3K7ERE1 68 aa5.59□□□□□ -1.51
SCN9A-202ENST00000409435 IGKV1-5P01602 117 aa5.59□□□□□ -1.51
SCN9A-202ENST00000409435 COX7CP15954 63 aa5.59□□□□□ -1.51
SCN9A-202ENST00000409435 TIMM17AQ99595 171 aa5.59□□□□□ -1.51
SCN9A-202ENST00000409435 IGKV4-1P06312 121 aa5.59□□□□□ -1.52
SCN9A-202ENST00000409435 Q9H8V8 135 aa5.59□□□□□ -1.52
SCN9A-202ENST00000409435 HIVEP3Q5T1R4 2406 aa5.59□□□□□ -1.52
SCN9A-202ENST00000409435 KIAA1549LQ6ZVL6 1849 aa5.59□□□□□ -1.52
SCN9A-202ENST00000409435 ZNF462Q96JM2 2506 aa5.59□□□□□ -1.52
SCN9A-202ENST00000409435 CRYGDP07320 174 aa5.58□□□□□ -1.52
SCN9A-202ENST00000409435 CLPSL2Q6UWE3 100 aa5.58□□□□□ -1.52
SCN9A-202ENST00000409435 CCDC179H3BU77 68 aa5.58□□□□□ -1.52
SCN9A-202ENST00000409435 ZNF134P52741 427 aa5.58□□□□□ -1.52
SCN9A-202ENST00000409435 Q8N1Y9 231 aa5.58□□□□□ -1.52
SCN9A-202ENST00000409435 MUC7Q8TAX7 377 aa5.58□□□□□ -1.52
SCN9A-202ENST00000409435 PCDH15Q96QU1 1955 aa5.58□□□□□ -1.52
SCN9A-202ENST00000409435 ETDCA0A1B0GVM5 59 aa5.58□□□□□ -1.52
SCN9A-202ENST00000409435 KIR2DL5BQ8NHK3 375 aa5.58□□□□□ -1.52
SCN9A-202ENST00000409435 DEFB114Q30KQ6 69 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 SDIM1Q6ZPB5 146 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 MAP6D1Q9H9H5 199 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 CCDC168Q8NDH2 2452 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 ODF3BA8MYP8 253 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 J3QL48 77 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 BPY2O14599 106 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 MRPL53Q96EL3 112 aaKnown RBP5.57□□□□□ -1.52
SCN9A-202ENST00000409435 SND1-IT1Q9HBX3 110 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 MED13Q9UHV7 2174 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 CSPG4Q6UVK1 2322 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 C3orf84H3BNL1 204 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 PRO0628Q9UI54 55 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 DENND4CQ5VZ89 1909 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 MYO18BQ8IUG5 2567 aa5.57□□□□□ -1.52
SCN9A-202ENST00000409435 FREM3P0C091 2139 aa5.56□□□□□ -1.52
SCN9A-202ENST00000409435 NANOS2P60321 138 aaKnown RBP5.56□□□□□ -1.52
SCN9A-202ENST00000409435 FAM222AQ5U5X8 452 aa5.56□□□□□ -1.52
SCN9A-202ENST00000409435 LECT2O14960 151 aa5.56□□□□□ -1.52
SCN9A-202ENST00000409435 CSDC2Q9Y534 153 aaKnown RBP5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms