RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 C19orf54Q5BKX5 351 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 SMIM2Q9BVW6 85 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 DPH3P1Q9H4G8 78 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 JPT2Q9H910 190 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 CENPVL3A0A0U1RRI6 287 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 RNASE13Q5GAN3 156 aaKnown RBP9.16□□□□□ -0.94
HMGB1-206ENST00000405805 C11orf44Q8N8P7 122 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 KLK9Q9UKQ9 250 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 ADORA2A-AS1P86434 159 aa9.15□□□□□ -0.94
HMGB1-206ENST00000405805 NSUN5P1Q3KNT7 163 aa9.15□□□□□ -0.94
HMGB1-206ENST00000405805 UQCRQO14949 82 aa9.15□□□□□ -0.94
HMGB1-206ENST00000405805 TRBV12-3P01733 135 aa9.15□□□□□ -0.94
HMGB1-206ENST00000405805 Q8N9W7 124 aa9.15□□□□□ -0.94
HMGB1-206ENST00000405805 CLEC2BQ92478 149 aa9.15□□□□□ -0.94
HMGB1-206ENST00000405805 SMAD5-AS1Q9Y6J3 95 aa9.15□□□□□ -0.95
HMGB1-206ENST00000405805 A0A096LNJ9 63 aa9.14□□□□□ -0.95
HMGB1-206ENST00000405805 MRGPRG-AS1Q2M3A8 158 aa9.14□□□□□ -0.95
HMGB1-206ENST00000405805 CFAP126Q5VTH2 177 aa9.14□□□□□ -0.95
HMGB1-206ENST00000405805 FAM110DQ8TAY7 271 aaPredicted RBP9.14□□□□□ -0.95
HMGB1-206ENST00000405805 LRBAP50851 2863 aa9.14□□□□□ -0.95
HMGB1-206ENST00000405805 RBMY1BA6NDE4 496 aaKnown RBP9.14□□□□□ -0.95
HMGB1-206ENST00000405805 RBMY1EA6NEQ0 496 aaKnown RBP9.14□□□□□ -0.95
HMGB1-206ENST00000405805 CRLF1O75462 422 aa9.14□□□□□ -0.95
HMGB1-206ENST00000405805 RBMY1DP0C7P1 496 aaKnown RBP9.14□□□□□ -0.95
HMGB1-206ENST00000405805 RBMY1A1P0DJD3 496 aaKnown RBP9.14□□□□□ -0.95
HMGB1-206ENST00000405805 RBMY1CP0DJD4 496 aa9.14□□□□□ -0.95
HMGB1-206ENST00000405805 RBMY1FQ15415 496 aaKnown RBP9.14□□□□□ -0.95
HMGB1-206ENST00000405805 NFE4Q86UQ8 179 aa9.14□□□□□ -0.95
HMGB1-206ENST00000405805 C3orf22Q8N5N4 141 aa9.14□□□□□ -0.95
HMGB1-206ENST00000405805 J3QQQ9 107 aa9.14□□□□□ -0.95
HMGB1-206ENST00000405805 MINOS1Q5TGZ0 78 aa9.14□□□□□ -0.95
HMGB1-206ENST00000405805 MINOS1-NBL1R4GNA1 71 aa9.14□□□□□ -0.95
HMGB1-206ENST00000405805 RAI1Q7Z5J4 1906 aaPredicted RBP9.14□□□□□ -0.95
HMGB1-206ENST00000405805 COL12A1Q99715 3063 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 CD28P10747 220 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 RPL39P62891 51 aaKnown RBP9.13□□□□□ -0.95
HMGB1-206ENST00000405805 C11orf21Q9P2W6 132 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 RBAKDNA6NC62 111 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 DUSP14O95147 198 aaKnown RBP9.13□□□□□ -0.95
HMGB1-206ENST00000405805 IGHG4P01861 327 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 HOXB4P17483 251 aaPredicted RBP9.13□□□□□ -0.95
HMGB1-206ENST00000405805 ZNF876PQ49A33 203 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 UNQ9165/PRO28630Q6UXU0 137 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 COPS9Q8WXC6 57 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 CDIP1Q9H305 208 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 BLCAPP62952 87 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 SPINK13Q1W4C9 94 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 TRAV25A0A0B4J276 109 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 ATOX1O00244 68 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 MPLKIPQ8TAP9 179 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 MOB4Q9Y3A3 225 aa9.13□□□□□ -0.95
HMGB1-206ENST00000405805 C9orf139Q6ZV77 190 aa9.12□□□□□ -0.95
HMGB1-206ENST00000405805 AJUBAQ96IF1 538 aa9.12□□□□□ -0.95
HMGB1-206ENST00000405805 HOXD3P31249 432 aaPredicted RBP9.12□□□□□ -0.95
HMGB1-206ENST00000405805 HAMPP81172 84 aa9.12□□□□□ -0.95
HMGB1-206ENST00000405805 RHOHQ15669 191 aa9.12□□□□□ -0.95
HMGB1-206ENST00000405805 MUSTN1Q8IVN3 82 aa9.11□□□□□ -0.95
HMGB1-206ENST00000405805 RNF185Q96GF1 192 aa9.11□□□□□ -0.95
HMGB1-206ENST00000405805 TRBV7-1A0A0A6YYK4 115 aa9.11□□□□□ -0.95
HMGB1-206ENST00000405805 SDHAF1A6NFY7 115 aa9.11□□□□□ -0.95
HMGB1-206ENST00000405805 MRPS12O15235 138 aaKnown RBP9.11□□□□□ -0.95
HMGB1-206ENST00000405805 NDUFA11Q86Y39 141 aa9.11□□□□□ -0.95
HMGB1-206ENST00000405805 NPBQ8NG41 125 aa9.11□□□□□ -0.95
HMGB1-206ENST00000405805 UBE2E1P51965 193 aa9.11□□□□□ -0.95
HMGB1-206ENST00000405805 SNRPD3P62318 126 aaKnown RBP9.11□□□□□ -0.95
HMGB1-206ENST00000405805 C20orf197Q8N268 126 aa9.11□□□□□ -0.95
HMGB1-206ENST00000405805 OPRPNQ99935 248 aaPredicted RBP9.11□□□□□ -0.95
HMGB1-206ENST00000405805 ZNF462Q96JM2 2506 aa9.11□□□□□ -0.95
HMGB1-206ENST00000405805 RPL35AP18077 110 aaKnown RBP9.1□□□□□ -0.95
HMGB1-206ENST00000405805 CCL19Q99731 98 aa9.1□□□□□ -0.95
HMGB1-206ENST00000405805 TIMM21Q9BVV7 248 aa9.1□□□□□ -0.95
HMGB1-206ENST00000405805 INAFM2P0DMQ5 153 aa9.1□□□□□ -0.95
HMGB1-206ENST00000405805 PLEKHB2Q96CS7 222 aa9.1□□□□□ -0.95
HMGB1-206ENST00000405805 OVOL1O14753 267 aa9.1□□□□□ -0.95
HMGB1-206ENST00000405805 PHLDA1Q8WV24 401 aaPredicted RBP9.1□□□□□ -0.95
HMGB1-206ENST00000405805 BAALC-AS2P0C853 105 aa9.09□□□□□ -0.95
HMGB1-206ENST00000405805 SDIM1Q6ZPB5 146 aa9.09□□□□□ -0.95
HMGB1-206ENST00000405805 C1orf195Q5TG92 126 aa9.09□□□□□ -0.95
HMGB1-206ENST00000405805 CCDC140Q96MF4 163 aa9.09□□□□□ -0.95
HMGB1-206ENST00000405805 U3KQE9 123 aa9.09□□□□□ -0.95
HMGB1-206ENST00000405805 ACANP16112 2415 aa9.09□□□□□ -0.95
HMGB1-206ENST00000405805 TRBV10-2A0A0K0K1G8 114 aa9.09□□□□□ -0.96
HMGB1-206ENST00000405805 NDUFC2O95298 119 aa9.09□□□□□ -0.96
HMGB1-206ENST00000405805 PRRC2AP48634 2157 aaKnown RBP9.09□□□□□ -0.96
HMGB1-206ENST00000405805 NRGNQ92686 78 aa9.09□□□□□ -0.96
HMGB1-206ENST00000405805 ITLN2Q8WWU7 325 aaPredicted RBP9.08□□□□□ -0.96
HMGB1-206ENST00000405805 IGHV3-16A0A0C4DH30 117 aa9.08□□□□□ -0.96
HMGB1-206ENST00000405805 LY6LH3BQJ8 138 aa9.08□□□□□ -0.96
HMGB1-206ENST00000405805 IGHV3-38A0A0C4DH36 116 aa9.07□□□□□ -0.96
HMGB1-206ENST00000405805 VCYO14598 125 aa9.07□□□□□ -0.96
HMGB1-206ENST00000405805 PIP4P2Q8N4L2 257 aa9.07□□□□□ -0.96
HMGB1-206ENST00000405805 DAND5Q8N907 189 aa9.07□□□□□ -0.96
HMGB1-206ENST00000405805 RELNP78509 3460 aa9.07□□□□□ -0.96
HMGB1-206ENST00000405805 DYNLRB2Q8TF09 96 aa9.07□□□□□ -0.96
HMGB1-206ENST00000405805 TNFRSF13BO14836 293 aaPredicted RBP9.07□□□□□ -0.96
HMGB1-206ENST00000405805 IGHV4-38-2P0DP08 117 aa9.06□□□□□ -0.96
HMGB1-206ENST00000405805 PRR9Q5T870 116 aa9.06□□□□□ -0.96
HMGB1-206ENST00000405805 A0A1W2PRX2 142 aa9.06□□□□□ -0.96
HMGB1-206ENST00000405805 SOCS3O14543 225 aa9.06□□□□□ -0.96
HMGB1-206ENST00000405805 NDUFA12Q9UI09 145 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 125.4 ms