RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 SIVA1O15304 175 aa10.31□□□□□ -0.76
SNCA-204ENST00000394989 DLX4Q92988 240 aaPredicted RBP10.31□□□□□ -0.76
SNCA-204ENST00000394989 UNC79Q9P2D8 2635 aa10.31□□□□□ -0.76
SNCA-204ENST00000394989 A0A087WWL8 130 aa10.31□□□□□ -0.76
SNCA-204ENST00000394989 RBMY1A1P0DJD3 496 aaKnown RBP10.31□□□□□ -0.76
SNCA-204ENST00000394989 RBMY1CP0DJD4 496 aa10.31□□□□□ -0.76
SNCA-204ENST00000394989 PLA2G2AP14555 144 aa10.31□□□□□ -0.76
SNCA-204ENST00000394989 RBMY1FQ15415 496 aaKnown RBP10.31□□□□□ -0.76
SNCA-204ENST00000394989 KHDC1LQ5JSQ8 128 aa10.31□□□□□ -0.76
SNCA-204ENST00000394989 ACANP16112 2415 aa10.31□□□□□ -0.76
SNCA-204ENST00000394989 TMEM61Q8N0U2 210 aa10.3□□□□□ -0.76
SNCA-204ENST00000394989 PHLDA1Q8WV24 401 aaPredicted RBP10.3□□□□□ -0.76
SNCA-204ENST00000394989 KNCNA6PVL3 124 aa10.3□□□□□ -0.76
SNCA-204ENST00000394989 ATP5LO75964 103 aa10.3□□□□□ -0.76
SNCA-204ENST00000394989 MT-ATP8P03928 68 aa10.3□□□□□ -0.76
SNCA-204ENST00000394989 SPINK8P0C7L1 97 aa10.3□□□□□ -0.76
SNCA-204ENST00000394989 KLHL30-AS1Q8NEE0 82 aa10.3□□□□□ -0.76
SNCA-204ENST00000394989 DUSP14O95147 198 aaKnown RBP10.3□□□□□ -0.76
SNCA-204ENST00000394989 IGHV1OR15-1A0A075B7D0 117 aa10.29□□□□□ -0.76
SNCA-204ENST00000394989 F8W1H4 67 aa10.29□□□□□ -0.76
SNCA-204ENST00000394989 SUMO4Q6EEV6 95 aa10.29□□□□□ -0.76
SNCA-204ENST00000394989 DEFB131AP59861 70 aa10.29□□□□□ -0.76
SNCA-204ENST00000394989 E9PLD3 99 aa10.28□□□□□ -0.76
SNCA-204ENST00000394989 PSMB2P49721 201 aa10.28□□□□□ -0.76
SNCA-204ENST00000394989 ORMDL2Q53FV1 153 aa10.28□□□□□ -0.76
SNCA-204ENST00000394989 TOMM6Q96B49 74 aa10.28□□□□□ -0.76
SNCA-204ENST00000394989 SS18L2Q9UHA2 77 aa10.28□□□□□ -0.76
SNCA-204ENST00000394989 RBMY1BA6NDE4 496 aaKnown RBP10.28□□□□□ -0.76
SNCA-204ENST00000394989 RBMY1EA6NEQ0 496 aaKnown RBP10.28□□□□□ -0.76
SNCA-204ENST00000394989 DPM2O94777 84 aa10.28□□□□□ -0.76
SNCA-204ENST00000394989 RBMY1DP0C7P1 496 aaKnown RBP10.28□□□□□ -0.76
SNCA-204ENST00000394989 PGPEP1Q9NXJ5 209 aa10.28□□□□□ -0.76
SNCA-204ENST00000394989 MRPL16Q9NX20 251 aaKnown RBP10.28□□□□□ -0.76
SNCA-204ENST00000394989 PEMTQ9UBM1 199 aa10.28□□□□□ -0.76
SNCA-204ENST00000394989 A8MTW9 85 aa10.27□□□□□ -0.77
SNCA-204ENST00000394989 HLA-DRB4P13762 266 aa10.27□□□□□ -0.77
SNCA-204ENST00000394989 HLA-DRB4X5D2U9 266 aa10.27□□□□□ -0.77
SNCA-204ENST00000394989 A0A087WX48 190 aa10.26□□□□□ -0.77
SNCA-204ENST00000394989 H3BMM0 161 aa10.26□□□□□ -0.77
SNCA-204ENST00000394989 EMP1P54849 157 aa10.26□□□□□ -0.77
SNCA-204ENST00000394989 FAM74A4Q5TZK3 123 aa10.26□□□□□ -0.77
SNCA-204ENST00000394989 ZFP2Q6ZN57 461 aa10.26□□□□□ -0.77
SNCA-204ENST00000394989 C11orf44Q8N8P7 122 aa10.26□□□□□ -0.77
SNCA-204ENST00000394989 GCN1Q92616 2671 aaKnown RBP10.26□□□□□ -0.77
SNCA-204ENST00000394989 PPP1R17O96001 155 aa10.26□□□□□ -0.77
SNCA-204ENST00000394989 CRYGDP07320 174 aa10.26□□□□□ -0.77
SNCA-204ENST00000394989 POLR2KP53803 58 aaKnown RBP10.26□□□□□ -0.77
SNCA-204ENST00000394989 J3QKU1 62 aa10.26□□□□□ -0.77
SNCA-204ENST00000394989 C2orf66Q6UXQ4 117 aa10.26□□□□□ -0.77
SNCA-204ENST00000394989 RAX2Q96IS3 184 aa10.26□□□□□ -0.77
SNCA-204ENST00000394989 SETD2Q9BYW2 2564 aaPredicted RBP10.26□□□□□ -0.77
SNCA-204ENST00000394989 DEFB114Q30KQ6 69 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 MORN3Q6PF18 240 aaPredicted RBP10.25□□□□□ -0.77
SNCA-204ENST00000394989 TEX29Q8N6K0 151 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 SVIPQ8NHG7 77 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 RNF183Q96D59 192 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 MTORP42345 2549 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 TRAV2A0A0B4J234 112 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 LINC01549A6NIU2 74 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 PRM2P04554 102 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 SCGB1D4Q6XE38 83 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 SCGB3A1Q96QR1 104 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 SPATA25Q9BR10 227 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 MAP6D1Q9H9H5 199 aa10.25□□□□□ -0.77
SNCA-204ENST00000394989 F5H697 171 aa10.24□□□□□ -0.77
SNCA-204ENST00000394989 RPL32P62910 135 aaKnown RBP10.24□□□□□ -0.77
SNCA-204ENST00000394989 SRSF9Q13242 221 aaKnown RBP eCLIP10.24□□□□□ -0.77
SNCA-204ENST00000394989 NFE4Q86UQ8 179 aa10.24□□□□□ -0.77
SNCA-204ENST00000394989 NEXN-AS1Q8NBZ9 246 aa10.24□□□□□ -0.77
SNCA-204ENST00000394989 ZNF256Q9Y2P7 627 aaPredicted RBP10.24□□□□□ -0.77
SNCA-204ENST00000394989 TRAV12-1A0A0B4J245 112 aa10.24□□□□□ -0.77
SNCA-204ENST00000394989 M0QY20 66 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 CD28P10747 220 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 SCGB1A1P11684 91 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 XGP55808 180 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 FOXI1Q12951 378 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 FHL3Q13643 280 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 RRN3P1Q2M238 152 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 ZNF876PQ49A33 203 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 KIR2DL4Q99706 377 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 TM2D2Q9BX73 214 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 A0A1W2PRX2 142 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 DYNLRB2Q8TF09 96 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 BAALCQ8WXS3 180 aa10.23□□□□□ -0.77
SNCA-204ENST00000394989 SDHAF1A6NFY7 115 aa10.22□□□□□ -0.77
SNCA-204ENST00000394989 HTN1P15515 57 aa10.22□□□□□ -0.77
SNCA-204ENST00000394989 SETXQ7Z333 2677 aaKnown RBP10.22□□□□□ -0.77
SNCA-204ENST00000394989 H7C2G1 150 aa10.22□□□□□ -0.77
SNCA-204ENST00000394989 YAE1D1Q9NRH1 226 aa10.22□□□□□ -0.77
SNCA-204ENST00000394989 TRGV11A0A075B6L2 103 aa10.22□□□□□ -0.77
SNCA-204ENST00000394989 TRBV6-5A0A0K0K1A5 114 aa10.22□□□□□ -0.77
SNCA-204ENST00000394989 TRBV27A0A0K0K1C4 114 aa10.22□□□□□ -0.77
SNCA-204ENST00000394989 F8VRH5 84 aa10.22□□□□□ -0.77
SNCA-204ENST00000394989 TSHBP01222 138 aa10.22□□□□□ -0.77
SNCA-204ENST00000394989 ZNF56Q15929 161 aa10.22□□□□□ -0.77
SNCA-204ENST00000394989 HIGD1BQ9P298 99 aa10.22□□□□□ -0.77
SNCA-204ENST00000394989 PRSS29PA6NIE9 313 aa10.21□□□□□ -0.77
SNCA-204ENST00000394989 OR11H12B2RN74 326 aa10.21□□□□□ -0.77
SNCA-204ENST00000394989 H7C1H1 209 aa10.21□□□□□ -0.77
SNCA-204ENST00000394989 PLNP26678 52 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms