RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 GAGE12GP0CL81 117 aa14.48□□□□□ -0.09
HDDC3-202ENST00000394272 GAGE12IP0CL82 117 aa14.48□□□□□ -0.09
HDDC3-202ENST00000394272 RIPPLY3P57055 190 aa14.48□□□□□ -0.09
HDDC3-202ENST00000394272 RPL32P62910 135 aaKnown RBP14.48□□□□□ -0.09
HDDC3-202ENST00000394272 ZNF479Q96JC4 524 aa14.48□□□□□ -0.09
HDDC3-202ENST00000394272 ST20Q9HBF5 79 aa14.48□□□□□ -0.09
HDDC3-202ENST00000394272 MIFP14174 115 aa14.48□□□□□ -0.09
HDDC3-202ENST00000394272 POLR2KP53803 58 aaKnown RBP14.48□□□□□ -0.09
HDDC3-202ENST00000394272 Q8NAQ8 132 aa14.48□□□□□ -0.09
HDDC3-202ENST00000394272 NIT2Q9NQR4 276 aa14.48□□□□□ -0.09
HDDC3-202ENST00000394272 TMEM70Q9BUB7 260 aa14.47□□□□□ -0.09
HDDC3-202ENST00000394272 IGHV4-28A0A0C4DH34 117 aa14.46□□□□□ -0.09
HDDC3-202ENST00000394272 TRGV2A0A075B6R0 118 aa14.46□□□□□ -0.1
HDDC3-202ENST00000394272 P0DMU3 169 aa14.46□□□□□ -0.1
HDDC3-202ENST00000394272 FAM231AP0DMU4 169 aa14.46□□□□□ -0.1
HDDC3-202ENST00000394272 FAM231CP0DMU5 169 aa14.46□□□□□ -0.1
HDDC3-202ENST00000394272 TP53TG1Q9Y2A0 90 aa14.46□□□□□ -0.1
HDDC3-202ENST00000394272 SDHAF1A6NFY7 115 aa14.45□□□□□ -0.1
HDDC3-202ENST00000394272 C18orf15Q96N68 181 aa14.45□□□□□ -0.1
HDDC3-202ENST00000394272 TCAPO15273 167 aa14.44□□□□□ -0.1
HDDC3-202ENST00000394272 PYY3Q5JQD4 70 aa14.44□□□□□ -0.1
HDDC3-202ENST00000394272 C12orf57Q99622 126 aa14.44□□□□□ -0.1
HDDC3-202ENST00000394272 TRBV27A0A0K0K1C4 114 aa14.44□□□□□ -0.1
HDDC3-202ENST00000394272 LYRM9A8MSI8 78 aa14.44□□□□□ -0.1
HDDC3-202ENST00000394272 CIDEAO60543 219 aa14.44□□□□□ -0.1
HDDC3-202ENST00000394272 PRB2P02812 416 aaPredicted RBP14.44□□□□□ -0.1
HDDC3-202ENST00000394272 Q9UF83 564 aa14.44□□□□□ -0.1
HDDC3-202ENST00000394272 K7EMI3 77 aa14.43□□□□□ -0.1
HDDC3-202ENST00000394272 LEPROTL1O95214 131 aa14.43□□□□□ -0.1
HDDC3-202ENST00000394272 HBDP02042 147 aa14.43□□□□□ -0.1
HDDC3-202ENST00000394272 LAGE3Q14657 143 aa14.43□□□□□ -0.1
HDDC3-202ENST00000394272 FAM222AQ5U5X8 452 aa14.43□□□□□ -0.1
HDDC3-202ENST00000394272 K7EIL1 84 aa14.42□□□□□ -0.1
HDDC3-202ENST00000394272 VCYO14598 125 aa14.42□□□□□ -0.1
HDDC3-202ENST00000394272 DEFB4AO15263 64 aa14.42□□□□□ -0.1
HDDC3-202ENST00000394272 SMIM6P0DI80 62 aa14.42□□□□□ -0.1
HDDC3-202ENST00000394272 NEGR1Q7Z3B1 354 aa14.42□□□□□ -0.1
HDDC3-202ENST00000394272 DKK2Q9UBU2 259 aa14.42□□□□□ -0.1
HDDC3-202ENST00000394272 DNHD1Q96M86 4753 aa14.42□□□□□ -0.1
HDDC3-202ENST00000394272 FCER1GP30273 86 aa14.42□□□□□ -0.1
HDDC3-202ENST00000394272 JOSD1Q15040 202 aaPredicted RBP14.42□□□□□ -0.1
HDDC3-202ENST00000394272 NEXN-AS1Q8NBZ9 246 aa14.42□□□□□ -0.1
HDDC3-202ENST00000394272 DEFB130BP0DP73 79 aa14.41□□□□□ -0.1
HDDC3-202ENST00000394272 DEFB130AP0DP74 79 aa14.41□□□□□ -0.1
HDDC3-202ENST00000394272 LINC00173Q6ZV60 143 aa14.41□□□□□ -0.1
HDDC3-202ENST00000394272 DNAJC30Q96LL9 226 aa14.4□□□□□ -0.1
HDDC3-202ENST00000394272 RETNQ9HD89 108 aa14.4□□□□□ -0.1
HDDC3-202ENST00000394272 C3orf79P0CE67 100 aa14.4□□□□□ -0.1
HDDC3-202ENST00000394272 ORMDL2Q53FV1 153 aa14.4□□□□□ -0.1
HDDC3-202ENST00000394272 K7EQD1 137 aa14.39□□□□□ -0.11
HDDC3-202ENST00000394272 SLC25A29Q8N8R3 303 aa14.39□□□□□ -0.11
HDDC3-202ENST00000394272 KIR2DL4Q99706 377 aa14.39□□□□□ -0.11
HDDC3-202ENST00000394272 HSPB8Q9UJY1 196 aa14.39□□□□□ -0.11
HDDC3-202ENST00000394272 TNFRSF18Q9Y5U5 241 aa14.39□□□□□ -0.11
HDDC3-202ENST00000394272 TRBV10-1A0A0K0K1A3 114 aa14.38□□□□□ -0.11
HDDC3-202ENST00000394272 KRTDAPP60985 99 aa14.38□□□□□ -0.11
HDDC3-202ENST00000394272 FHL2Q14192 279 aa14.38□□□□□ -0.11
HDDC3-202ENST00000394272 CELA1Q9UNI1 258 aa14.38□□□□□ -0.11
HDDC3-202ENST00000394272 TRBV6-4A0A1B0GX49 114 aa14.37□□□□□ -0.11
HDDC3-202ENST00000394272 I3L3M4 83 aa14.37□□□□□ -0.11
HDDC3-202ENST00000394272 NUDT3O95989 172 aa14.36□□□□□ -0.11
HDDC3-202ENST00000394272 KRTAP21-3Q3LHN1 58 aa14.36□□□□□ -0.11
HDDC3-202ENST00000394272 SBSPONQ8IVN8 264 aa14.36□□□□□ -0.11
HDDC3-202ENST00000394272 TRGV4A0A0C4DH28 118 aa14.35□□□□□ -0.11
HDDC3-202ENST00000394272 BTF3P20290 206 aaKnown RBP14.35□□□□□ -0.11
HDDC3-202ENST00000394272 HUWE1Q7Z6Z7 4374 aaKnown RBP14.35□□□□□ -0.11
HDDC3-202ENST00000394272 TSHBP01222 138 aa14.35□□□□□ -0.11
HDDC3-202ENST00000394272 CDPF1Q6NVV7 123 aa14.35□□□□□ -0.11
HDDC3-202ENST00000394272 Q8N976 141 aa14.35□□□□□ -0.11
HDDC3-202ENST00000394272 DEFB104AQ8WTQ1 72 aa14.35□□□□□ -0.11
HDDC3-202ENST00000394272 TRBV7-3A0A075B6L6 115 aa14.34□□□□□ -0.11
HDDC3-202ENST00000394272 PCP4L1A6NKN8 68 aa14.34□□□□□ -0.11
HDDC3-202ENST00000394272 SPART-AS1P0CW21 52 aa14.34□□□□□ -0.11
HDDC3-202ENST00000394272 TENM3Q9P273 2699 aa14.33□□□□□ -0.12
HDDC3-202ENST00000394272 SYS1-DBNDD2H3BUS1 97 aa14.33□□□□□ -0.12
HDDC3-202ENST00000394272 SCGB1D1O95968 90 aa14.33□□□□□ -0.12
HDDC3-202ENST00000394272 DAD1P61803 113 aa14.33□□□□□ -0.12
HDDC3-202ENST00000394272 RHOHQ15669 191 aa14.33□□□□□ -0.12
HDDC3-202ENST00000394272 ZNRF2Q8NHG8 242 aa14.33□□□□□ -0.12
HDDC3-202ENST00000394272 TOMM6Q96B49 74 aa14.33□□□□□ -0.12
HDDC3-202ENST00000394272 MAP1LC3CQ9BXW4 147 aa14.33□□□□□ -0.12
HDDC3-202ENST00000394272 RPL36AP83881 106 aaKnown RBP14.32□□□□□ -0.12
HDDC3-202ENST00000394272 RPL36ALQ969Q0 106 aaKnown RBP14.32□□□□□ -0.12
HDDC3-202ENST00000394272 DEFB121Q5J5C9 76 aa14.31□□□□□ -0.12
HDDC3-202ENST00000394272 C2orf66Q6UXQ4 117 aa14.31□□□□□ -0.12
HDDC3-202ENST00000394272 SPATA12Q7Z6I5 190 aa14.31□□□□□ -0.12
HDDC3-202ENST00000394272 IFI27L1Q96BM0 104 aa14.31□□□□□ -0.12
HDDC3-202ENST00000394272 C11orf68Q9H3H3 251 aaKnown RBP14.31□□□□□ -0.12
HDDC3-202ENST00000394272 TEX48A0A1B0GUV7 120 aa14.31□□□□□ -0.12
HDDC3-202ENST00000394272 TM2D3Q9BRN9 247 aa14.31□□□□□ -0.12
HDDC3-202ENST00000394272 HHLA3Q9XRX5 114 aa14.31□□□□□ -0.12
HDDC3-202ENST00000394272 G0S2P27469 103 aa14.3□□□□□ -0.12
HDDC3-202ENST00000394272 UBE2D3P61077 147 aa14.3□□□□□ -0.12
HDDC3-202ENST00000394272 UBE2D2P62837 147 aa14.3□□□□□ -0.12
HDDC3-202ENST00000394272 LOC100131303A0A0U1RQF7 123 aa14.29□□□□□ -0.12
HDDC3-202ENST00000394272 PHLDA1Q8WV24 401 aaPredicted RBP14.29□□□□□ -0.12
HDDC3-202ENST00000394272 PRADC1Q9BSG0 188 aa14.29□□□□□ -0.12
HDDC3-202ENST00000394272 DNAH9Q9NYC9 4486 aa14.29□□□□□ -0.12
HDDC3-202ENST00000394272 IGHV3-38A0A0C4DH36 116 aa14.29□□□□□ -0.12
HDDC3-202ENST00000394272 GAGE12JA6NER3 117 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms