RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PRAC2D3DTV9 90 aa9.8□□□□□ -0.84
CCDC88C-204ENST00000389857 MDFICQ9P1T7 246 aa9.8□□□□□ -0.84
CCDC88C-204ENST00000389857 UFSP1Q6NVU6 142 aa9.8□□□□□ -0.84
CCDC88C-204ENST00000389857 ADORA2A-AS1P86434 159 aa9.8□□□□□ -0.84
CCDC88C-204ENST00000389857 FAM167A-AS1Q96KT0 104 aa9.8□□□□□ -0.84
CCDC88C-204ENST00000389857 K7ERS5 55 aa9.79□□□□□ -0.84
CCDC88C-204ENST00000389857 MIAQ16674 131 aa9.79□□□□□ -0.84
CCDC88C-204ENST00000389857 NFE4Q86UQ8 179 aa9.79□□□□□ -0.84
CCDC88C-204ENST00000389857 UPK3BQ9BT76 320 aa9.79□□□□□ -0.84
CCDC88C-204ENST00000389857 BPY2O14599 106 aa9.79□□□□□ -0.84
CCDC88C-204ENST00000389857 NDUFA11Q86Y39 141 aa9.79□□□□□ -0.84
CCDC88C-204ENST00000389857 ADAMTS9Q9P2N4 1935 aa9.78□□□□□ -0.84
CCDC88C-204ENST00000389857 WFDC2Q14508 124 aa9.78□□□□□ -0.84
CCDC88C-204ENST00000389857 H7C423 109 aa9.78□□□□□ -0.84
CCDC88C-204ENST00000389857 MAP6D1Q9H9H5 199 aa9.78□□□□□ -0.84
CCDC88C-204ENST00000389857 A0A0J9YX75 114 aa9.77□□□□□ -0.84
CCDC88C-204ENST00000389857 PLCE1Q9P212 2302 aa9.77□□□□□ -0.84
CCDC88C-204ENST00000389857 ODF1Q14990 250 aa9.77□□□□□ -0.85
CCDC88C-204ENST00000389857 ZFP36P26651 326 aaKnown RBP9.76□□□□□ -0.85
CCDC88C-204ENST00000389857 ZFAND2AQ8N6M9 145 aa9.76□□□□□ -0.85
CCDC88C-204ENST00000389857 IGKV2D-26A0A0A0MRZ7 120 aa9.76□□□□□ -0.85
CCDC88C-204ENST00000389857 USP17L23D6RBM5 183 aa9.76□□□□□ -0.85
CCDC88C-204ENST00000389857 C20orf203Q8NBC4 194 aa9.76□□□□□ -0.85
CCDC88C-204ENST00000389857 Q6ZSR3 168 aa9.76□□□□□ -0.85
CCDC88C-204ENST00000389857 BRK1Q8WUW1 75 aa9.76□□□□□ -0.85
CCDC88C-204ENST00000389857 DNAJC9-AS1A6NH13 148 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 Q6ZUT4 128 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 LINC00643Q86TS7 51 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 Q8N7P7 452 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 ODF3Q96PU9 254 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 IGKV2-24A0A0C4DH68 120 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 REG3AQ06141 175 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 NRGNQ92686 78 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 SMIM9A6NGZ8 99 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 LYRM9A8MSI8 78 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 HILS1P60008 231 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 SIRPDQ9H106 197 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 ZNF106Q9H2Y7 1883 aaKnown RBP9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 A6NDX4 124 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 PRR15LQ9BU68 103 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 KIAA1549LQ6ZVL6 1849 aa9.75□□□□□ -0.85
CCDC88C-204ENST00000389857 NOTCH3Q9UM47 2321 aa9.74□□□□□ -0.85
CCDC88C-204ENST00000389857 HIST2H2BDQ6DRA6 164 aa9.74□□□□□ -0.85
CCDC88C-204ENST00000389857 CRYGDP07320 174 aa9.74□□□□□ -0.85
CCDC88C-204ENST00000389857 WT1P19544 449 aaPredicted RBP9.74□□□□□ -0.85
CCDC88C-204ENST00000389857 CDPF1Q6NVV7 123 aa9.74□□□□□ -0.85
CCDC88C-204ENST00000389857 LINC00269Q8N2A0 174 aa9.74□□□□□ -0.85
CCDC88C-204ENST00000389857 ROS1P08922 2347 aa9.74□□□□□ -0.85
CCDC88C-204ENST00000389857 NUPR1O60356 82 aa9.74□□□□□ -0.85
CCDC88C-204ENST00000389857 GVINP1Q7Z2Y8 2422 aa9.74□□□□□ -0.85
CCDC88C-204ENST00000389857 PCNX2A6NKB5 2137 aa9.74□□□□□ -0.85
CCDC88C-204ENST00000389857 TRAV26-1A0A087WT03 109 aa9.74□□□□□ -0.85
CCDC88C-204ENST00000389857 MED13Q9UHV7 2174 aa9.73□□□□□ -0.85
CCDC88C-204ENST00000389857 ODF3L1Q8IXM7 274 aa9.73□□□□□ -0.85
CCDC88C-204ENST00000389857 HIGD2AQ9BW72 106 aa9.73□□□□□ -0.85
CCDC88C-204ENST00000389857 G3V4G9 280 aa9.73□□□□□ -0.85
CCDC88C-204ENST00000389857 IGLV1-47P01700 117 aa9.73□□□□□ -0.85
CCDC88C-204ENST00000389857 TRAV23DV6A0A075B6W5 121 aa9.73□□□□□ -0.85
CCDC88C-204ENST00000389857 FAM19A1Q7Z5A9 133 aa9.72□□□□□ -0.85
CCDC88C-204ENST00000389857 MALRD1Q5VYJ5 2156 aa9.72□□□□□ -0.85
CCDC88C-204ENST00000389857 UNQ9165/PRO28630Q6UXU0 137 aa9.72□□□□□ -0.85
CCDC88C-204ENST00000389857 TDRG1Q3Y452 100 aa9.71□□□□□ -0.85
CCDC88C-204ENST00000389857 SPTSSBQ8NFR3 76 aa9.71□□□□□ -0.85
CCDC88C-204ENST00000389857 A0A087WZ39 114 aa9.71□□□□□ -0.86
CCDC88C-204ENST00000389857 WFDC11Q8NEX6 87 aa9.71□□□□□ -0.86
CCDC88C-204ENST00000389857 ATP5EP2Q5VTU8 51 aa9.71□□□□□ -0.86
CCDC88C-204ENST00000389857 NOTCH4Q99466 2003 aa9.71□□□□□ -0.86
CCDC88C-204ENST00000389857 LOXL1Q08397 574 aaPredicted RBP9.7□□□□□ -0.86
CCDC88C-204ENST00000389857 TCL1BO95988 128 aa9.7□□□□□ -0.86
CCDC88C-204ENST00000389857 CHCHD10Q8WYQ3 142 aaPredicted RBP9.7□□□□□ -0.86
CCDC88C-204ENST00000389857 A0A0J9YXY3 114 aa9.7□□□□□ -0.86
CCDC88C-204ENST00000389857 C19orf71A6NCJ1 209 aa9.7□□□□□ -0.86
CCDC88C-204ENST00000389857 ARHGAP21Q5T5U3 1957 aa9.7□□□□□ -0.86
CCDC88C-204ENST00000389857 LRCOL1A6NCL2 159 aa9.69□□□□□ -0.86
CCDC88C-204ENST00000389857 TNFRSF13BO14836 293 aaPredicted RBP9.69□□□□□ -0.86
CCDC88C-204ENST00000389857 LRRC75A-AS1Q8N1F1 130 aa9.69□□□□□ -0.86
CCDC88C-204ENST00000389857 C7orf33Q8WU49 177 aa9.69□□□□□ -0.86
CCDC88C-204ENST00000389857 TTTY13Q9BZ97 58 aa9.69□□□□□ -0.86
CCDC88C-204ENST00000389857 DEFB1P60022 68 aa9.69□□□□□ -0.86
CCDC88C-204ENST00000389857 C3orf22Q8N5N4 141 aa9.68□□□□□ -0.86
CCDC88C-204ENST00000389857 IGLV2-14P01704 120 aa9.68□□□□□ -0.86
CCDC88C-204ENST00000389857 CEMP1Q6PRD7 247 aaPredicted RBP9.68□□□□□ -0.86
CCDC88C-204ENST00000389857 FBXL19-AS1Q494R0 122 aa9.68□□□□□ -0.86
CCDC88C-204ENST00000389857 PCNX1Q96RV3 2341 aa9.68□□□□□ -0.86
CCDC88C-204ENST00000389857 SPTAN1Q13813 2472 aaKnown RBP9.68□□□□□ -0.86
CCDC88C-204ENST00000389857 DEFB131BA0A096LNP1 70 aa9.68□□□□□ -0.86
CCDC88C-204ENST00000389857 E7EUB6 86 aa9.68□□□□□ -0.86
CCDC88C-204ENST00000389857 P0DMU3 169 aa9.67□□□□□ -0.86
CCDC88C-204ENST00000389857 FAM231AP0DMU4 169 aa9.67□□□□□ -0.86
CCDC88C-204ENST00000389857 FAM231CP0DMU5 169 aa9.67□□□□□ -0.86
CCDC88C-204ENST00000389857 FAM222AQ5U5X8 452 aa9.67□□□□□ -0.86
CCDC88C-204ENST00000389857 IGKV1D-37A0A075B6S9 117 aa9.67□□□□□ -0.86
CCDC88C-204ENST00000389857 TP53TG3Q9ULZ0 132 aa9.67□□□□□ -0.86
CCDC88C-204ENST00000389857 Q6ZTI0 123 aa9.67□□□□□ -0.86
CCDC88C-204ENST00000389857 SPANXB1Q9NS25 103 aaPredicted RBP9.67□□□□□ -0.86
CCDC88C-204ENST00000389857 ZNF706Q9Y5V0 76 aaPredicted RBP9.66□□□□□ -0.86
CCDC88C-204ENST00000389857 C2orf16Q68DN1 1984 aa9.66□□□□□ -0.86
CCDC88C-204ENST00000389857 LINC00467Q9BRT7 94 aa9.66□□□□□ -0.86
CCDC88C-204ENST00000389857 V9GYY9 64 aa9.66□□□□□ -0.86
CCDC88C-204ENST00000389857 MPLKIPQ8TAP9 179 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms