RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 TECTAO75443 2155 aa8.25□□□□□ -1.09
RTN3-206ENST00000377819 DEFB4AO15263 64 aa8.25□□□□□ -1.09
RTN3-206ENST00000377819 FXYD5Q96DB9 178 aa8.25□□□□□ -1.09
RTN3-206ENST00000377819 VWCEQ96DN2 955 aa8.25□□□□□ -1.09
RTN3-206ENST00000377819 PNRC2Q9NPJ4 139 aaKnown RBP8.25□□□□□ -1.09
RTN3-206ENST00000377819 TRAV26-1A0A087WT03 109 aa8.25□□□□□ -1.09
RTN3-206ENST00000377819 RPL39LQ96EH5 51 aaKnown RBP8.25□□□□□ -1.09
RTN3-206ENST00000377819 AJUBAQ96IF1 538 aa8.25□□□□□ -1.09
RTN3-206ENST00000377819 KAAG1Q9UBP8 84 aa8.25□□□□□ -1.09
RTN3-206ENST00000377819 BRCA2P51587 3418 aa8.25□□□□□ -1.09
RTN3-206ENST00000377819 A0A0J9YWU9 116 aa8.25□□□□□ -1.09
RTN3-206ENST00000377819 NDUFC1O43677 76 aa8.25□□□□□ -1.09
RTN3-206ENST00000377819 CENPVL3A0A0U1RRI6 287 aa8.24□□□□□ -1.09
RTN3-206ENST00000377819 ANKHD1Q8IWZ3 2542 aaKnown RBP8.24□□□□□ -1.09
RTN3-206ENST00000377819 GREB1Q4ZG55 1949 aa8.24□□□□□ -1.09
RTN3-206ENST00000377819 WT1P19544 449 aaPredicted RBP8.24□□□□□ -1.09
RTN3-206ENST00000377819 UQCRQO14949 82 aa8.24□□□□□ -1.09
RTN3-206ENST00000377819 ATP5EP56381 51 aaPredicted RBP8.24□□□□□ -1.09
RTN3-206ENST00000377819 PTPRSQ13332 1948 aa8.24□□□□□ -1.09
RTN3-206ENST00000377819 HILS1P60008 231 aa8.24□□□□□ -1.09
RTN3-206ENST00000377819 LYPD6Q86Y78 171 aa8.24□□□□□ -1.09
RTN3-206ENST00000377819 PLXNA3P51805 1871 aa8.23□□□□□ -1.09
RTN3-206ENST00000377819 ZFYVE26Q68DK2 2539 aa8.23□□□□□ -1.09
RTN3-206ENST00000377819 SCN10AQ9Y5Y9 1956 aa8.23□□□□□ -1.09
RTN3-206ENST00000377819 ZFHX2Q9C0A1 2572 aaPredicted RBP8.23□□□□□ -1.09
RTN3-206ENST00000377819 C1orf158Q8N1D5 194 aa8.23□□□□□ -1.09
RTN3-206ENST00000377819 C10orf105Q8TEF2 133 aa8.23□□□□□ -1.09
RTN3-206ENST00000377819 UBE2D2P62837 147 aa8.23□□□□□ -1.09
RTN3-206ENST00000377819 WFDC2Q14508 124 aa8.23□□□□□ -1.09
RTN3-206ENST00000377819 TPSG1Q9NRR2 321 aa8.23□□□□□ -1.09
RTN3-206ENST00000377819 CLEC2BQ92478 149 aa8.22□□□□□ -1.09
RTN3-206ENST00000377819 SPRY2O43597 315 aa8.22□□□□□ -1.09
RTN3-206ENST00000377819 ACANP16112 2415 aa8.22□□□□□ -1.09
RTN3-206ENST00000377819 IGHV2-5P01817 119 aa8.22□□□□□ -1.09
RTN3-206ENST00000377819 CCKP06307 115 aa8.22□□□□□ -1.09
RTN3-206ENST00000377819 CRYGDP07320 174 aa8.22□□□□□ -1.09
RTN3-206ENST00000377819 HEATR5AQ86XA9 2040 aa8.22□□□□□ -1.09
RTN3-206ENST00000377819 IGHV4-38-2P0DP08 117 aa8.21□□□□□ -1.09
RTN3-206ENST00000377819 C17orf58Q2M2W7 97 aa8.21□□□□□ -1.09
RTN3-206ENST00000377819 DOCK6Q96HP0 2047 aa8.21□□□□□ -1.09
RTN3-206ENST00000377819 IGFL3Q6UXB1 125 aa8.21□□□□□ -1.09
RTN3-206ENST00000377819 CHD5Q8TDI0 1954 aa8.21□□□□□ -1.09
RTN3-206ENST00000377819 ATG2AQ2TAZ0 1938 aa8.21□□□□□ -1.1
RTN3-206ENST00000377819 MYOFQ9NZM1 2061 aa8.21□□□□□ -1.1
RTN3-206ENST00000377819 FSHBP01225 129 aa8.21□□□□□ -1.1
RTN3-206ENST00000377819 NFE4Q86UQ8 179 aa8.21□□□□□ -1.1
RTN3-206ENST00000377819 E9PLD3 99 aa8.21□□□□□ -1.1
RTN3-206ENST00000377819 J3QRE1 110 aa8.21□□□□□ -1.1
RTN3-206ENST00000377819 ASPHD1Q5U4P2 390 aa8.2□□□□□ -1.1
RTN3-206ENST00000377819 WFDC13Q8IUB5 93 aa8.2□□□□□ -1.1
RTN3-206ENST00000377819 ODF3L1Q8IXM7 274 aa8.2□□□□□ -1.1
RTN3-206ENST00000377819 TMEM263Q8WUH6 116 aaKnown RBP8.2□□□□□ -1.1
RTN3-206ENST00000377819 HIGD1BQ9P298 99 aa8.2□□□□□ -1.1
RTN3-206ENST00000377819 K7EMT4 169 aa8.2□□□□□ -1.1
RTN3-206ENST00000377819 IGKV1-17P01599 117 aa8.2□□□□□ -1.1
RTN3-206ENST00000377819 SCXQ7RTU7 201 aa8.2□□□□□ -1.1
RTN3-206ENST00000377819 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.2□□□□□ -1.1
RTN3-206ENST00000377819 DEFB131BA0A096LNP1 70 aa8.2□□□□□ -1.1
RTN3-206ENST00000377819 BLCAPP62952 87 aa8.2□□□□□ -1.1
RTN3-206ENST00000377819 C2orf70A6NJV1 201 aa8.2□□□□□ -1.1
RTN3-206ENST00000377819 RPL39P62891 51 aaKnown RBP8.2□□□□□ -1.1
RTN3-206ENST00000377819 REG3AQ06141 175 aa8.2□□□□□ -1.1
RTN3-206ENST00000377819 IGHV4-30-4P0DP06 118 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 IGHV4-31P0DP07 118 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 LRRK2Q5S007 2527 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 LINC01548A6NM66 108 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 LY6LH3BQJ8 138 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 ZFP36P26651 326 aaKnown RBP8.19□□□□□ -1.1
RTN3-206ENST00000377819 ZFAND3Q9H8U3 227 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 X6R8D5 127 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 EML6Q6ZMW3 1958 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 C11orf86A6NJI1 115 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 B3GALT5-AS1P59052 145 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 SYCNQ0VAF6 134 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 C20orf173Q96LM9 149 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 FOXL2NBQ6ZUU3 175 aa8.19□□□□□ -1.1
RTN3-206ENST00000377819 PHF3Q92576 2039 aaKnown RBP8.18□□□□□ -1.1
RTN3-206ENST00000377819 MTORP42345 2549 aa8.18□□□□□ -1.1
RTN3-206ENST00000377819 PIEZO1Q92508 2521 aa8.18□□□□□ -1.1
RTN3-206ENST00000377819 TLN1Q9Y490 2541 aaKnown RBP8.18□□□□□ -1.1
RTN3-206ENST00000377819 Q6ZR03 302 aa8.18□□□□□ -1.1
RTN3-206ENST00000377819 C20orf203Q8NBC4 194 aa8.18□□□□□ -1.1
RTN3-206ENST00000377819 PKD1L2Q7Z442 2459 aa8.18□□□□□ -1.1
RTN3-206ENST00000377819 LYPD6BQ8NI32 183 aa8.18□□□□□ -1.1
RTN3-206ENST00000377819 IGHV4-61A0A0C4DH41 118 aa8.18□□□□□ -1.1
RTN3-206ENST00000377819 LINC00269Q8N2A0 174 aa8.18□□□□□ -1.1
RTN3-206ENST00000377819 FXYD2P54710 66 aa8.17□□□□□ -1.1
RTN3-206ENST00000377819 C17orf82Q86X59 251 aaPredicted RBP8.17□□□□□ -1.1
RTN3-206ENST00000377819 SRCAPQ6ZRS2 3230 aa8.17□□□□□ -1.1
RTN3-206ENST00000377819 SPATA12Q7Z6I5 190 aa8.17□□□□□ -1.1
RTN3-206ENST00000377819 TET1Q8NFU7 2136 aa8.17□□□□□ -1.1
RTN3-206ENST00000377819 CSRP3P50461 194 aa8.17□□□□□ -1.1
RTN3-206ENST00000377819 FAM19A5Q7Z5A7 132 aaPredicted RBP8.17□□□□□ -1.1
RTN3-206ENST00000377819 ZNF581Q9P0T4 197 aa8.17□□□□□ -1.1
RTN3-206ENST00000377819 OBSL1O75147 1896 aa8.17□□□□□ -1.1
RTN3-206ENST00000377819 ENHOQ6UWT2 76 aa8.17□□□□□ -1.1
RTN3-206ENST00000377819 FLVCR1-AS1Q8TAF5 88 aa8.17□□□□□ -1.1
RTN3-206ENST00000377819 PPDPFQ9H3Y8 114 aa8.17□□□□□ -1.1
RTN3-206ENST00000377819 TMEM89A2RUT3 159 aa8.16□□□□□ -1.1
RTN3-206ENST00000377819 IGHV2-70P01814 119 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms