RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 C6orf226Q5I0X4 101 aa10.91□□□□□ -0.66
TCOF1-202ENST00000377797 C18orf65Q6ZTR6 163 aa10.91□□□□□ -0.66
TCOF1-202ENST00000377797 CST9LQ9H4G1 147 aa10.91□□□□□ -0.66
TCOF1-202ENST00000377797 TRAV8-4A0A0B4J246 113 aa10.91□□□□□ -0.66
TCOF1-202ENST00000377797 ZNF625Q96I27 306 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-202ENST00000377797 ERG28Q9UKR5 140 aa10.9□□□□□ -0.66
TCOF1-202ENST00000377797 TP53TG3Q9ULZ0 132 aa10.9□□□□□ -0.66
TCOF1-202ENST00000377797 GAGE2BQ13066 116 aa10.9□□□□□ -0.66
TCOF1-202ENST00000377797 GAGE2EQ4V326 116 aa10.9□□□□□ -0.66
TCOF1-202ENST00000377797 C16orf74Q96GX8 76 aa10.9□□□□□ -0.66
TCOF1-202ENST00000377797 GAGE2DQ9UEU5 116 aa10.9□□□□□ -0.66
TCOF1-202ENST00000377797 HECTD1Q9ULT8 2610 aa10.9□□□□□ -0.66
TCOF1-202ENST00000377797 MYMXA0A1B0GTQ4 84 aa10.9□□□□□ -0.66
TCOF1-202ENST00000377797 PAX4O43316 350 aa10.9□□□□□ -0.66
TCOF1-202ENST00000377797 ZFP2Q6ZN57 461 aa10.9□□□□□ -0.66
TCOF1-202ENST00000377797 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.9□□□□□ -0.67
TCOF1-202ENST00000377797 IGKV2-29A2NJV5 120 aaPredicted RBP10.9□□□□□ -0.67
TCOF1-202ENST00000377797 MRPS12O15235 138 aaKnown RBP10.9□□□□□ -0.67
TCOF1-202ENST00000377797 SS18Q15532 418 aa10.89□□□□□ -0.67
TCOF1-202ENST00000377797 CRIP2P52943 208 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-202ENST00000377797 GATD1Q8NB37 220 aa10.89□□□□□ -0.67
TCOF1-202ENST00000377797 RNASE8Q8TDE3 154 aaKnown RBP10.89□□□□□ -0.67
TCOF1-202ENST00000377797 ODF3Q96PU9 254 aa10.89□□□□□ -0.67
TCOF1-202ENST00000377797 LINC01545Q5VT33 79 aa10.89□□□□□ -0.67
TCOF1-202ENST00000377797 KIR2DL5BA0A0G2JN68 375 aa10.88□□□□□ -0.67
TCOF1-202ENST00000377797 KIR2DL5BA0A0G2JPC4 375 aa10.88□□□□□ -0.67
TCOF1-202ENST00000377797 ZFAND6Q6FIF0 208 aa10.88□□□□□ -0.67
TCOF1-202ENST00000377797 KIR2DL5AQ8N109 375 aa10.88□□□□□ -0.67
TCOF1-202ENST00000377797 DSCAML1Q8TD84 2053 aa10.88□□□□□ -0.67
TCOF1-202ENST00000377797 A0A0J9YY99 117 aa10.88□□□□□ -0.67
TCOF1-202ENST00000377797 SMR3AQ99954 134 aa10.88□□□□□ -0.67
TCOF1-202ENST00000377797 NDUFA11Q86Y39 141 aa10.87□□□□□ -0.67
TCOF1-202ENST00000377797 DEFB125Q8N687 156 aa10.87□□□□□ -0.67
TCOF1-202ENST00000377797 INSL3P51460 131 aa10.87□□□□□ -0.67
TCOF1-202ENST00000377797 HILS1P60008 231 aa10.87□□□□□ -0.67
TCOF1-202ENST00000377797 RPL39P62891 51 aaKnown RBP10.87□□□□□ -0.67
TCOF1-202ENST00000377797 VCANP13611 3396 aa10.86□□□□□ -0.67
TCOF1-202ENST00000377797 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-202ENST00000377797 PCP2Q8IVA1 136 aa10.86□□□□□ -0.67
TCOF1-202ENST00000377797 CITED1Q99966 193 aa10.86□□□□□ -0.67
TCOF1-202ENST00000377797 CRLF1O75462 422 aa10.86□□□□□ -0.67
TCOF1-202ENST00000377797 ANKRD39Q53RE8 183 aa10.86□□□□□ -0.67
TCOF1-202ENST00000377797 DEFB135Q30KP9 77 aa10.86□□□□□ -0.67
TCOF1-202ENST00000377797 DPH3Q96FX2 82 aa10.86□□□□□ -0.67
TCOF1-202ENST00000377797 C11orf21Q9P2W6 132 aa10.86□□□□□ -0.67
TCOF1-202ENST00000377797 RBMY1BA6NDE4 496 aaKnown RBP10.85□□□□□ -0.67
TCOF1-202ENST00000377797 RBMY1EA6NEQ0 496 aaKnown RBP10.85□□□□□ -0.67
TCOF1-202ENST00000377797 RBMY1DP0C7P1 496 aaKnown RBP10.85□□□□□ -0.67
TCOF1-202ENST00000377797 RBMY1A1P0DJD3 496 aaKnown RBP10.85□□□□□ -0.67
TCOF1-202ENST00000377797 RBMY1CP0DJD4 496 aa10.85□□□□□ -0.67
TCOF1-202ENST00000377797 COL6A3P12111 3177 aa10.85□□□□□ -0.67
TCOF1-202ENST00000377797 DNAJC30Q96LL9 226 aa10.85□□□□□ -0.67
TCOF1-202ENST00000377797 PGPEP1Q9NXJ5 209 aa10.85□□□□□ -0.67
TCOF1-202ENST00000377797 PRR9Q5T870 116 aa10.85□□□□□ -0.67
TCOF1-202ENST00000377797 J3QQQ9 107 aa10.85□□□□□ -0.67
TCOF1-202ENST00000377797 EDN2P20800 178 aa10.85□□□□□ -0.67
TCOF1-202ENST00000377797 DCANP1Q8TF63 244 aa10.85□□□□□ -0.67
TCOF1-202ENST00000377797 ATXN8Q156A1 80 aa10.84□□□□□ -0.67
TCOF1-202ENST00000377797 NDUFA12Q9UI09 145 aa10.84□□□□□ -0.67
TCOF1-202ENST00000377797 TMEM263Q8WUH6 116 aaKnown RBP10.84□□□□□ -0.67
TCOF1-202ENST00000377797 K7EQD1 137 aa10.84□□□□□ -0.67
TCOF1-202ENST00000377797 DSPP15924 2871 aaKnown RBP10.83□□□□□ -0.68
TCOF1-202ENST00000377797 DEFB4AO15263 64 aa10.83□□□□□ -0.68
TCOF1-202ENST00000377797 SPANXA1Q9NS26 97 aa10.83□□□□□ -0.68
TCOF1-202ENST00000377797 AKAP13Q12802 2813 aa10.82□□□□□ -0.68
TCOF1-202ENST00000377797 A0A0J9YXV3 536 aa10.82□□□□□ -0.68
TCOF1-202ENST00000377797 ESM1Q9NQ30 184 aa10.82□□□□□ -0.68
TCOF1-202ENST00000377797 TRBV7-3A0A075B6L6 115 aa10.82□□□□□ -0.68
TCOF1-202ENST00000377797 GYPEP15421 78 aa10.82□□□□□ -0.68
TCOF1-202ENST00000377797 MRAPQ8TCY5 172 aa10.82□□□□□ -0.68
TCOF1-202ENST00000377797 ANGP03950 147 aaKnown RBP10.82□□□□□ -0.68
TCOF1-202ENST00000377797 SPINK8P0C7L1 97 aa10.82□□□□□ -0.68
TCOF1-202ENST00000377797 SPART-AS1P0CW21 52 aa10.81□□□□□ -0.68
TCOF1-202ENST00000377797 UBE2DNLQ8IWF7 75 aa10.81□□□□□ -0.68
TCOF1-202ENST00000377797 HERVK_113P63121 156 aa10.81□□□□□ -0.68
TCOF1-202ENST00000377797 CLPSL2Q6UWE3 100 aa10.81□□□□□ -0.68
TCOF1-202ENST00000377797 CCL25O15444 150 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 BRI3O95415 125 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 BVES-AS1Q5T3Y7 98 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 ATP5G1P05496 136 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 Q6ZQT7 251 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 Q6ZTI0 123 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 TOMM6Q96B49 74 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 KLLNB2CW77 178 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 DAZ2Q13117 558 aaKnown RBP10.8□□□□□ -0.68
TCOF1-202ENST00000377797 C2orf82Q6UX34 121 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 DAZ4Q86SG3 579 aaKnown RBP10.8□□□□□ -0.68
TCOF1-202ENST00000377797 ATP6V0E2Q8NHE4 81 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 TTTY13Q9BZ97 58 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 DAZ3Q9NR90 486 aaKnown RBP10.8□□□□□ -0.68
TCOF1-202ENST00000377797 C9orf118A6NHY6 69 aa10.8□□□□□ -0.68
TCOF1-202ENST00000377797 DNAH14Q0VDD8 3507 aa10.79□□□□□ -0.68
TCOF1-202ENST00000377797 P0DMU3 169 aa10.79□□□□□ -0.68
TCOF1-202ENST00000377797 FAM231AP0DMU4 169 aa10.79□□□□□ -0.68
TCOF1-202ENST00000377797 FAM231CP0DMU5 169 aa10.79□□□□□ -0.68
TCOF1-202ENST00000377797 ODF1Q14990 250 aa10.79□□□□□ -0.68
TCOF1-202ENST00000377797 Q6ZVH6 145 aa10.79□□□□□ -0.68
TCOF1-202ENST00000377797 RNF185Q96GF1 192 aa10.79□□□□□ -0.68
TCOF1-202ENST00000377797 RNASE3P12724 160 aaKnown RBP10.79□□□□□ -0.68
TCOF1-202ENST00000377797 BAALCQ8WXS3 180 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms