RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 INSL3P51460 131 aa13.06□□□□□ -0.32
HLA-DQB1-201ENST00000374943 HNRNPA3P51991 378 aaKnown RBP13.06□□□□□ -0.32
HLA-DQB1-201ENST00000374943 KIR2DL4Q99706 377 aa13.06□□□□□ -0.32
HLA-DQB1-201ENST00000374943 C2orf88Q9BSF0 95 aa13.06□□□□□ -0.32
HLA-DQB1-201ENST00000374943 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.05□□□□□ -0.32
HLA-DQB1-201ENST00000374943 GIG44P09565 113 aaPredicted RBP13.05□□□□□ -0.32
HLA-DQB1-201ENST00000374943 C2orf66Q6UXQ4 117 aa13.05□□□□□ -0.32
HLA-DQB1-201ENST00000374943 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.05□□□□□ -0.32
HLA-DQB1-201ENST00000374943 CITED1Q99966 193 aa13.05□□□□□ -0.32
HLA-DQB1-201ENST00000374943 DKK2Q9UBU2 259 aa13.05□□□□□ -0.32
HLA-DQB1-201ENST00000374943 MRPS16Q9Y3D3 137 aaKnown RBP13.05□□□□□ -0.32
HLA-DQB1-201ENST00000374943 TRAV12-1A0A0B4J245 112 aa13.05□□□□□ -0.32
HLA-DQB1-201ENST00000374943 RHODO00212 210 aa13.05□□□□□ -0.32
HLA-DQB1-201ENST00000374943 WFDC10AQ9H1F0 79 aa13.05□□□□□ -0.32
HLA-DQB1-201ENST00000374943 CFAP126Q5VTH2 177 aa13.04□□□□□ -0.32
HLA-DQB1-201ENST00000374943 ZFP2Q6ZN57 461 aa13.04□□□□□ -0.32
HLA-DQB1-201ENST00000374943 NEGR1Q7Z3B1 354 aa13.04□□□□□ -0.32
HLA-DQB1-201ENST00000374943 PRIMA1Q86XR5 153 aa13.04□□□□□ -0.32
HLA-DQB1-201ENST00000374943 RNASE8Q8TDE3 154 aaKnown RBP13.04□□□□□ -0.32
HLA-DQB1-201ENST00000374943 SCGB3A1Q96QR1 104 aa13.04□□□□□ -0.32
HLA-DQB1-201ENST00000374943 C1QTNF4Q9BXJ3 329 aa13.04□□□□□ -0.32
HLA-DQB1-201ENST00000374943 FBN3Q75N90 2809 aa13.03□□□□□ -0.32
HLA-DQB1-201ENST00000374943 RS1O15537 224 aa13.03□□□□□ -0.32
HLA-DQB1-201ENST00000374943 AZU1P20160 251 aa13.03□□□□□ -0.32
HLA-DQB1-201ENST00000374943 SLC25A34Q6PIV7 304 aa13.03□□□□□ -0.32
HLA-DQB1-201ENST00000374943 TMEM263Q8WUH6 116 aaKnown RBP13.03□□□□□ -0.32
HLA-DQB1-201ENST00000374943 CYSLTR1Q9Y271 337 aa13.03□□□□□ -0.32
HLA-DQB1-201ENST00000374943 A0A087WX48 190 aa13.02□□□□□ -0.32
HLA-DQB1-201ENST00000374943 RHOHQ15669 191 aa13.02□□□□□ -0.32
HLA-DQB1-201ENST00000374943 C9orf66Q5T8R8 295 aa13.02□□□□□ -0.32
HLA-DQB1-201ENST00000374943 ERASQ7Z444 233 aa13.02□□□□□ -0.32
HLA-DQB1-201ENST00000374943 MDFIQ99750 246 aa13.02□□□□□ -0.32
HLA-DQB1-201ENST00000374943 DPM2O94777 84 aa13.02□□□□□ -0.33
HLA-DQB1-201ENST00000374943 COX8AP10176 69 aa13.02□□□□□ -0.33
HLA-DQB1-201ENST00000374943 ANKRD39Q53RE8 183 aa13.02□□□□□ -0.33
HLA-DQB1-201ENST00000374943 MRPL16Q9NX20 251 aaKnown RBP13.02□□□□□ -0.33
HLA-DQB1-201ENST00000374943 IGKCP01834 107 aa13.01□□□□□ -0.33
HLA-DQB1-201ENST00000374943 IGHV3OR16-12A0A075B7B8 117 aa13□□□□□ -0.33
HLA-DQB1-201ENST00000374943 NEXN-AS1Q8NBZ9 246 aa13□□□□□ -0.33
HLA-DQB1-201ENST00000374943 CSNK1G2-AS1Q8NCQ2 148 aa13□□□□□ -0.33
HLA-DQB1-201ENST00000374943 I3L3M4 83 aa12.99□□□□□ -0.33
HLA-DQB1-201ENST00000374943 IGHV3-53P01767 116 aa12.99□□□□□ -0.33
HLA-DQB1-201ENST00000374943 RPL35AP18077 110 aaKnown RBP12.99□□□□□ -0.33
HLA-DQB1-201ENST00000374943 MRPL35Q9NZE8 188 aaKnown RBP12.99□□□□□ -0.33
HLA-DQB1-201ENST00000374943 HHLA3Q9XRX5 114 aa12.99□□□□□ -0.33
HLA-DQB1-201ENST00000374943 TP53TG1Q9Y2A0 90 aa12.99□□□□□ -0.33
HLA-DQB1-201ENST00000374943 TSHBP01222 138 aa12.99□□□□□ -0.33
HLA-DQB1-201ENST00000374943 STPG4Q8N801 248 aa12.99□□□□□ -0.33
HLA-DQB1-201ENST00000374943 TIMM17AQ99595 171 aa12.99□□□□□ -0.33
HLA-DQB1-201ENST00000374943 IGHV3-73A0A0B4J1V6 119 aa12.98□□□□□ -0.33
HLA-DQB1-201ENST00000374943 IGIPA6NJ69 53 aa12.98□□□□□ -0.33
HLA-DQB1-201ENST00000374943 F8VRH5 84 aa12.98□□□□□ -0.33
HLA-DQB1-201ENST00000374943 PLNP26678 52 aa12.98□□□□□ -0.33
HLA-DQB1-201ENST00000374943 DAZ2Q13117 558 aaKnown RBP12.98□□□□□ -0.33
HLA-DQB1-201ENST00000374943 BAALCQ8WXS3 180 aa12.98□□□□□ -0.33
HLA-DQB1-201ENST00000374943 C16orf74Q96GX8 76 aa12.98□□□□□ -0.33
HLA-DQB1-201ENST00000374943 TMEM141Q96I45 108 aa12.98□□□□□ -0.33
HLA-DQB1-201ENST00000374943 TENM1Q9UKZ4 2725 aa12.98□□□□□ -0.33
HLA-DQB1-201ENST00000374943 GTSCR1Q86UQ5 136 aa12.97□□□□□ -0.33
HLA-DQB1-201ENST00000374943 DNAJC30Q96LL9 226 aa12.97□□□□□ -0.33
HLA-DQB1-201ENST00000374943 FGF6P10767 208 aa12.96□□□□□ -0.33
HLA-DQB1-201ENST00000374943 Q6ZSN1 163 aa12.96□□□□□ -0.33
HLA-DQB1-201ENST00000374943 DLEU1O43261 78 aa12.96□□□□□ -0.34
HLA-DQB1-201ENST00000374943 SPATA3Q8NHX4 192 aa12.96□□□□□ -0.34
HLA-DQB1-201ENST00000374943 TP73-AS1Q9UF72 201 aa12.96□□□□□ -0.34
HLA-DQB1-201ENST00000374943 CHTOPQ9Y3Y2 248 aaKnown RBP12.96□□□□□ -0.34
HLA-DQB1-201ENST00000374943 VWFP04275 2813 aa12.95□□□□□ -0.34
HLA-DQB1-201ENST00000374943 TRGV1A0A0A0MS02 117 aa12.95□□□□□ -0.34
HLA-DQB1-201ENST00000374943 PLAC8L1A1L4L8 177 aa12.95□□□□□ -0.34
HLA-DQB1-201ENST00000374943 P0DMU3 169 aa12.95□□□□□ -0.34
HLA-DQB1-201ENST00000374943 FAM231AP0DMU4 169 aa12.95□□□□□ -0.34
HLA-DQB1-201ENST00000374943 FAM231CP0DMU5 169 aa12.95□□□□□ -0.34
HLA-DQB1-201ENST00000374943 BOD1L2Q8IYS8 172 aa12.95□□□□□ -0.34
HLA-DQB1-201ENST00000374943 TNFRSF18Q9Y5U5 241 aa12.95□□□□□ -0.34
HLA-DQB1-201ENST00000374943 RPL39P62891 51 aaKnown RBP12.94□□□□□ -0.34
HLA-DQB1-201ENST00000374943 C20orf203Q8NBC4 194 aa12.94□□□□□ -0.34
HLA-DQB1-201ENST00000374943 ATRQ13535 2644 aa12.94□□□□□ -0.34
HLA-DQB1-201ENST00000374943 TRAV4A0A0B4J268 109 aa12.93□□□□□ -0.34
HLA-DQB1-201ENST00000374943 OR4C5Q8NGB2 326 aa12.93□□□□□ -0.34
HLA-DQB1-201ENST00000374943 PRSS29PA6NIE9 313 aa12.93□□□□□ -0.34
HLA-DQB1-201ENST00000374943 RRN3P1Q2M238 152 aa12.93□□□□□ -0.34
HLA-DQB1-201ENST00000374943 ZC2HC1BQ5TFG8 222 aa12.93□□□□□ -0.34
HLA-DQB1-201ENST00000374943 Q6ZTI0 123 aa12.93□□□□□ -0.34
HLA-DQB1-201ENST00000374943 C2orf91Q6ZV80 131 aa12.93□□□□□ -0.34
HLA-DQB1-201ENST00000374943 OVOL2Q9BRP0 275 aa12.93□□□□□ -0.34
HLA-DQB1-201ENST00000374943 NOTCH3Q9UM47 2321 aa12.92□□□□□ -0.34
HLA-DQB1-201ENST00000374943 WFDC9Q8NEX5 89 aa12.92□□□□□ -0.34
HLA-DQB1-201ENST00000374943 PMVKQ15126 192 aa12.91□□□□□ -0.34
HLA-DQB1-201ENST00000374943 DEFB104AQ8WTQ1 72 aa12.91□□□□□ -0.34
HLA-DQB1-201ENST00000374943 NOP10Q9NPE3 64 aaKnown RBP12.91□□□□□ -0.34
HLA-DQB1-201ENST00000374943 A0A1B0GV90 55 aa12.9□□□□□ -0.34
HLA-DQB1-201ENST00000374943 SIVA1O15304 175 aa12.9□□□□□ -0.34
HLA-DQB1-201ENST00000374943 WIPF1O43516 503 aa12.9□□□□□ -0.34
HLA-DQB1-201ENST00000374943 NMUP48645 174 aa12.9□□□□□ -0.34
HLA-DQB1-201ENST00000374943 BATFQ16520 125 aa12.9□□□□□ -0.34
HLA-DQB1-201ENST00000374943 CIDEAO60543 219 aa12.89□□□□□ -0.35
HLA-DQB1-201ENST00000374943 COL5A1-AS1Q5SY13 56 aa12.89□□□□□ -0.35
HLA-DQB1-201ENST00000374943 Q9UF83 564 aa12.89□□□□□ -0.35
HLA-DQB1-201ENST00000374943 IGKV2D-26A0A0A0MRZ7 120 aa12.89□□□□□ -0.35
HLA-DQB1-201ENST00000374943 TRBV10-1A0A0K0K1A3 114 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms