RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RBFOX3A6NFN3 312 aa14.33□□□□□ -0.12
CCDC28B-201ENST00000373602 LECT2O14960 151 aa14.33□□□□□ -0.12
CCDC28B-201ENST00000373602 Q5VSD8 79 aa14.33□□□□□ -0.12
CCDC28B-201ENST00000373602 FER1L6-AS1Q8NA97 138 aa14.33□□□□□ -0.12
CCDC28B-201ENST00000373602 FRZBQ92765 325 aa14.33□□□□□ -0.12
CCDC28B-201ENST00000373602 UBE2WQ96B02 151 aa14.33□□□□□ -0.12
CCDC28B-201ENST00000373602 MED9Q9NWA0 146 aa14.33□□□□□ -0.12
CCDC28B-201ENST00000373602 TRBV20OR9-2A0A075B6H5 130 aa14.32□□□□□ -0.12
CCDC28B-201ENST00000373602 IGKV2D-24A0A075B6R9 120 aa14.32□□□□□ -0.12
CCDC28B-201ENST00000373602 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.32□□□□□ -0.12
CCDC28B-201ENST00000373602 BAALCQ8WXS3 180 aa14.32□□□□□ -0.12
CCDC28B-201ENST00000373602 TMEM262E9PQX1 116 aa14.31□□□□□ -0.12
CCDC28B-201ENST00000373602 SMR3BP02814 79 aaPredicted RBP14.31□□□□□ -0.12
CCDC28B-201ENST00000373602 ATRAIDQ6UW56 229 aa14.31□□□□□ -0.12
CCDC28B-201ENST00000373602 TPPP3Q9BW30 176 aa14.31□□□□□ -0.12
CCDC28B-201ENST00000373602 VAX2Q9UIW0 290 aa14.31□□□□□ -0.12
CCDC28B-201ENST00000373602 P01737 135 aa14.3□□□□□ -0.12
CCDC28B-201ENST00000373602 TAGLN2P37802 199 aaKnown RBP14.3□□□□□ -0.12
CCDC28B-201ENST00000373602 CACNG7P62955 275 aa14.3□□□□□ -0.12
CCDC28B-201ENST00000373602 HAMPP81172 84 aa14.3□□□□□ -0.12
CCDC28B-201ENST00000373602 Q0VG73 95 aa14.3□□□□□ -0.12
CCDC28B-201ENST00000373602 BIN3Q9NQY0 253 aa14.3□□□□□ -0.12
CCDC28B-201ENST00000373602 FAM30AQ9NZY2 134 aa14.3□□□□□ -0.12
CCDC28B-201ENST00000373602 DNAH8Q96JB1 4490 aa14.3□□□□□ -0.12
CCDC28B-201ENST00000373602 XKRY2A2RUG3 117 aa14.29□□□□□ -0.12
CCDC28B-201ENST00000373602 TMEM97Q5BJF2 176 aa14.29□□□□□ -0.12
CCDC28B-201ENST00000373602 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.28□□□□□ -0.12
CCDC28B-201ENST00000373602 F2Z2F3 143 aa14.28□□□□□ -0.12
CCDC28B-201ENST00000373602 MPV17L2Q567V2 206 aa14.28□□□□□ -0.12
CCDC28B-201ENST00000373602 NTM-AS1Q6ZSK4 140 aa14.28□□□□□ -0.12
CCDC28B-201ENST00000373602 C9orf62Q8N4C0 152 aa14.28□□□□□ -0.12
CCDC28B-201ENST00000373602 Q8N976 141 aa14.28□□□□□ -0.12
CCDC28B-201ENST00000373602 M0QY20 66 aa14.27□□□□□ -0.13
CCDC28B-201ENST00000373602 INAFM2P0DMQ5 153 aa14.27□□□□□ -0.13
CCDC28B-201ENST00000373602 PKIAP61925 76 aa14.27□□□□□ -0.13
CCDC28B-201ENST00000373602 AKAP14Q86UN6 197 aa14.27□□□□□ -0.13
CCDC28B-201ENST00000373602 CHCHD5Q9BSY4 110 aa14.27□□□□□ -0.13
CCDC28B-201ENST00000373602 MGPP08493 103 aa14.26□□□□□ -0.13
CCDC28B-201ENST00000373602 ENHOQ6UWT2 76 aa14.26□□□□□ -0.13
CCDC28B-201ENST00000373602 C15orf54Q8N8G6 183 aa14.26□□□□□ -0.13
CCDC28B-201ENST00000373602 H7C1H1 209 aa14.25□□□□□ -0.13
CCDC28B-201ENST00000373602 SUMO4Q6EEV6 95 aa14.25□□□□□ -0.13
CCDC28B-201ENST00000373602 LYZL1Q6UWQ5 148 aa14.25□□□□□ -0.13
CCDC28B-201ENST00000373602 Q6ZSA8 131 aa14.25□□□□□ -0.13
CCDC28B-201ENST00000373602 NUDT10Q8NFP7 164 aa14.25□□□□□ -0.13
CCDC28B-201ENST00000373602 NUDT11Q96G61 164 aa14.25□□□□□ -0.13
CCDC28B-201ENST00000373602 C1orf43Q9BWL3 253 aa14.25□□□□□ -0.13
CCDC28B-201ENST00000373602 CRPP02741 224 aa14.24□□□□□ -0.13
CCDC28B-201ENST00000373602 ANGP03950 147 aaKnown RBP14.24□□□□□ -0.13
CCDC28B-201ENST00000373602 TRBV25-1A0A075B6N4 114 aa14.23□□□□□ -0.13
CCDC28B-201ENST00000373602 FAM229AH3BQW9 127 aa14.23□□□□□ -0.13
CCDC28B-201ENST00000373602 TRGC1P0CF51 173 aa14.23□□□□□ -0.13
CCDC28B-201ENST00000373602 NTF3P20783 257 aa14.22□□□□□ -0.13
CCDC28B-201ENST00000373602 CTRLP40313 264 aa14.22□□□□□ -0.13
CCDC28B-201ENST00000373602 IQCJQ1A5X6 159 aa14.22□□□□□ -0.13
CCDC28B-201ENST00000373602 WDR73Q6P4I2 378 aa14.22□□□□□ -0.13
CCDC28B-201ENST00000373602 hCG_2014768A0A024R1R8 64 aa14.21□□□□□ -0.13
CCDC28B-201ENST00000373602 K7EN84 100 aa14.21□□□□□ -0.13
CCDC28B-201ENST00000373602 RBX1P62877 108 aa14.21□□□□□ -0.13
CCDC28B-201ENST00000373602 BLOC1S1P78537 153 aa14.21□□□□□ -0.13
CCDC28B-201ENST00000373602 GAGE6Q13070 117 aa14.21□□□□□ -0.13
CCDC28B-201ENST00000373602 OCC1Q8TAD7 63 aa14.21□□□□□ -0.13
CCDC28B-201ENST00000373602 DPH3P1Q9H4G8 78 aa14.21□□□□□ -0.13
CCDC28B-201ENST00000373602 MIAQ16674 131 aa14.2□□□□□ -0.14
CCDC28B-201ENST00000373602 RASL11AQ6T310 242 aa14.2□□□□□ -0.14
CCDC28B-201ENST00000373602 ALKAL2Q6UX46 152 aa14.2□□□□□ -0.14
CCDC28B-201ENST00000373602 CNFNQ9BYD5 112 aa14.2□□□□□ -0.14
CCDC28B-201ENST00000373602 RNASE7Q9H1E1 156 aaKnown RBP14.2□□□□□ -0.14
CCDC28B-201ENST00000373602 RPP21Q9H633 154 aaKnown RBP14.2□□□□□ -0.14
CCDC28B-201ENST00000373602 IGHV1-24A0A0C4DH33 117 aa14.19□□□□□ -0.14
CCDC28B-201ENST00000373602 NKX2-5P52952 324 aaPredicted RBP14.19□□□□□ -0.14
CCDC28B-201ENST00000373602 LINC01620Q4KN68 170 aa14.19□□□□□ -0.14
CCDC28B-201ENST00000373602 LYPD6BQ8NI32 183 aa14.19□□□□□ -0.14
CCDC28B-201ENST00000373602 PRR34Q9NV39 138 aa14.19□□□□□ -0.14
CCDC28B-201ENST00000373602 VPS13BQ7Z7G8 4022 aa14.19□□□□□ -0.14
CCDC28B-201ENST00000373602 TMEM250H0YL14 139 aa14.18□□□□□ -0.14
CCDC28B-201ENST00000373602 C14orf177Q52M58 125 aa14.18□□□□□ -0.14
CCDC28B-201ENST00000373602 NIT2Q9NQR4 276 aa14.18□□□□□ -0.14
CCDC28B-201ENST00000373602 TWIST1Q15672 202 aa14.16□□□□□ -0.14
CCDC28B-201ENST00000373602 LINC00269Q8N2A0 174 aa14.16□□□□□ -0.14
CCDC28B-201ENST00000373602 PGLYRP4Q96LB8 373 aa14.15□□□□□ -0.14
CCDC28B-201ENST00000373602 USP17L23D6RBM5 183 aa14.14□□□□□ -0.15
CCDC28B-201ENST00000373602 HLA-DQA1P01909 254 aa14.14□□□□□ -0.15
CCDC28B-201ENST00000373602 KRTAP26-1Q6PEX3 210 aa14.14□□□□□ -0.15
CCDC28B-201ENST00000373602 CLPSL2Q6UWE3 100 aa14.14□□□□□ -0.15
CCDC28B-201ENST00000373602 GTSF1Q8WW33 167 aa14.14□□□□□ -0.15
CCDC28B-201ENST00000373602 TMEM243Q9BU79 118 aa14.14□□□□□ -0.15
CCDC28B-201ENST00000373602 FAM231DQ6ZW35 169 aa14.13□□□□□ -0.15
CCDC28B-201ENST00000373602 A0A1B0GUV1 79 aa14.12□□□□□ -0.15
CCDC28B-201ENST00000373602 GATCO43716 136 aaKnown RBP14.12□□□□□ -0.15
CCDC28B-201ENST00000373602 REG3AQ06141 175 aa14.12□□□□□ -0.15
CCDC28B-201ENST00000373602 SCXQ7RTU7 201 aa14.12□□□□□ -0.15
CCDC28B-201ENST00000373602 C20orf203Q8NBC4 194 aa14.12□□□□□ -0.15
CCDC28B-201ENST00000373602 LINC00528Q8N1L1 170 aa14.11□□□□□ -0.15
CCDC28B-201ENST00000373602 GATD1Q8NB37 220 aa14.11□□□□□ -0.15
CCDC28B-201ENST00000373602 COTL1Q14019 142 aa14.1□□□□□ -0.15
CCDC28B-201ENST00000373602 DEFB104AQ8WTQ1 72 aa14.1□□□□□ -0.15
CCDC28B-201ENST00000373602 CHAC1Q9BUX1 264 aa14.1□□□□□ -0.15
CCDC28B-201ENST00000373602 FLG2Q5D862 2391 aaPredicted RBP14.09□□□□□ -0.15
CCDC28B-201ENST00000373602 IGLV4-60A0A075B6I1 120 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms