RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 PRO1854Q9UHT4 67 aa10.27□□□□□ -0.77
USP49-201ENST00000373006 LYRM7Q5U5X0 104 aa10.26□□□□□ -0.77
USP49-201ENST00000373006 KIF25-AS1Q9Y6Z4 181 aa10.26□□□□□ -0.77
USP49-201ENST00000373006 SDHAF1A6NFY7 115 aa10.26□□□□□ -0.77
USP49-201ENST00000373006 SOCS3O14543 225 aa10.26□□□□□ -0.77
USP49-201ENST00000373006 A4D1N5 150 aa10.26□□□□□ -0.77
USP49-201ENST00000373006 J3QQQ9 107 aa10.26□□□□□ -0.77
USP49-201ENST00000373006 POLR2KP53803 58 aaKnown RBP10.26□□□□□ -0.77
USP49-201ENST00000373006 ZNF56Q15929 161 aa10.26□□□□□ -0.77
USP49-201ENST00000373006 KLK9Q2XQG4 91 aa10.26□□□□□ -0.77
USP49-201ENST00000373006 KLK9Q9UKQ9 250 aa10.26□□□□□ -0.77
USP49-201ENST00000373006 PPP1R17O96001 155 aa10.25□□□□□ -0.77
USP49-201ENST00000373006 CELSR2Q9HCU4 2923 aa10.25□□□□□ -0.77
USP49-201ENST00000373006 LGALS3P17931 250 aaKnown RBP10.25□□□□□ -0.77
USP49-201ENST00000373006 PAPPA-AS1Q5QFB9 102 aa10.25□□□□□ -0.77
USP49-201ENST00000373006 ADARB2-AS1A8MUL3 147 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 TMEM262E9PQX1 116 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 VCYO14598 125 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 NPFFO15130 113 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 PRSS2P07478 247 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 EDN2P20800 178 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 BPESC1Q9GZL8 116 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 TRAV12-3A0A0B4J271 114 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 FBXL19-AS1Q494R0 122 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 BRD3OSQ6XYD6 125 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 AMELXQ99217 191 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 POLQO75417 2590 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 TRAV8-4A0A0B4J246 113 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 IGHV1-69DA0A0B4J2H0 117 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 RHODO00212 210 aa10.24□□□□□ -0.77
USP49-201ENST00000373006 EIF4EBP3O60516 100 aaPredicted RBP10.24□□□□□ -0.77
USP49-201ENST00000373006 IGKV3-20P01619 116 aa10.23□□□□□ -0.77
USP49-201ENST00000373006 IGHV4OR15-8A0A075B7B6 117 aa10.23□□□□□ -0.77
USP49-201ENST00000373006 A0A087WW49 117 aa10.23□□□□□ -0.77
USP49-201ENST00000373006 LY6EQ16553 131 aa10.23□□□□□ -0.77
USP49-201ENST00000373006 ZNF876PQ49A33 203 aa10.23□□□□□ -0.77
USP49-201ENST00000373006 Q8N1Y9 231 aa10.23□□□□□ -0.77
USP49-201ENST00000373006 FAM19A4Q96LR4 140 aa10.23□□□□□ -0.77
USP49-201ENST00000373006 DUX3Q96PT4 197 aa10.23□□□□□ -0.77
USP49-201ENST00000373006 RHPN1-AS1Q9BWJ2 59 aa10.23□□□□□ -0.77
USP49-201ENST00000373006 ZNF580Q9UK33 172 aa10.23□□□□□ -0.77
USP49-201ENST00000373006 LOC107984640A0A0U1RRK4 108 aa10.22□□□□□ -0.77
USP49-201ENST00000373006 ELANEP08246 267 aa10.22□□□□□ -0.77
USP49-201ENST00000373006 SBSPONQ8IVN8 264 aa10.22□□□□□ -0.77
USP49-201ENST00000373006 TMEM141Q96I45 108 aa10.22□□□□□ -0.77
USP49-201ENST00000373006 SPXQ9BT56 116 aa10.22□□□□□ -0.77
USP49-201ENST00000373006 FAM223BA6NKX1 122 aa10.22□□□□□ -0.77
USP49-201ENST00000373006 MED14OSP0DP75 135 aa10.22□□□□□ -0.77
USP49-201ENST00000373006 MUSTN1Q8IVN3 82 aa10.22□□□□□ -0.77
USP49-201ENST00000373006 FAM223AQ8IWN6 122 aa10.22□□□□□ -0.77
USP49-201ENST00000373006 VPREB3Q9UKI3 123 aa10.22□□□□□ -0.77
USP49-201ENST00000373006 NACAE9PAV3 2078 aa10.21□□□□□ -0.77
USP49-201ENST00000373006 NDUFA4O00483 81 aa10.21□□□□□ -0.77
USP49-201ENST00000373006 RS1O15537 224 aa10.21□□□□□ -0.77
USP49-201ENST00000373006 TIMM17AQ99595 171 aa10.21□□□□□ -0.78
USP49-201ENST00000373006 TRAV12-2A0A075B6T6 113 aa10.2□□□□□ -0.78
USP49-201ENST00000373006 POM121L12Q8N7R1 296 aa10.2□□□□□ -0.78
USP49-201ENST00000373006 KLK5Q9Y337 293 aaPredicted RBP10.2□□□□□ -0.78
USP49-201ENST00000373006 USP9XQ93008 2570 aaPredicted RBP10.2□□□□□ -0.78
USP49-201ENST00000373006 IGHV3-33P01772 117 aa10.2□□□□□ -0.78
USP49-201ENST00000373006 MDFICQ9P1T7 246 aa10.2□□□□□ -0.78
USP49-201ENST00000373006 MOB4Q9Y3A3 225 aa10.2□□□□□ -0.78
USP49-201ENST00000373006 EPG5Q9HCE0 2579 aa10.2□□□□□ -0.78
USP49-201ENST00000373006 LMO4P61968 165 aa10.2□□□□□ -0.78
USP49-201ENST00000373006 A0A0J9YXV3 536 aa10.19□□□□□ -0.78
USP49-201ENST00000373006 NXPH4O95158 308 aa10.19□□□□□ -0.78
USP49-201ENST00000373006 TMEM263Q8WUH6 116 aaKnown RBP10.19□□□□□ -0.78
USP49-201ENST00000373006 TRBV27A0A0K0K1C4 114 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 APRG1Q8IVJ8 170 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 CSMD2Q7Z408 3487 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 C19orf54Q5BKX5 351 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 TMEM223A0PJW6 202 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 KLLNB2CW77 178 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 P0DMU3 169 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 FAM231AP0DMU4 169 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 FAM231CP0DMU5 169 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 Q6ZSV7 163 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 VCX2Q9H322 139 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 TLN2Q9Y4G6 2542 aa10.18□□□□□ -0.78
USP49-201ENST00000373006 FLNCQ14315 2725 aa10.17□□□□□ -0.78
USP49-201ENST00000373006 MYO9AB2RTY4 2548 aa10.17□□□□□ -0.78
USP49-201ENST00000373006 BLCAPP62952 87 aa10.17□□□□□ -0.78
USP49-201ENST00000373006 KLRB1Q12918 225 aa10.17□□□□□ -0.78
USP49-201ENST00000373006 ABCA2Q9BZC7 2435 aa10.17□□□□□ -0.78
USP49-201ENST00000373006 ZANQ9Y493 2812 aa10.17□□□□□ -0.78
USP49-201ENST00000373006 LEPROTO15243 131 aa10.16□□□□□ -0.78
USP49-201ENST00000373006 C2orf82Q6UX34 121 aa10.16□□□□□ -0.78
USP49-201ENST00000373006 LRRK2Q5S007 2527 aa10.16□□□□□ -0.78
USP49-201ENST00000373006 ZNF22P17026 224 aaPredicted RBP10.16□□□□□ -0.78
USP49-201ENST00000373006 UTP20O75691 2785 aaKnown RBP10.16□□□□□ -0.78
USP49-201ENST00000373006 SETD2Q9BYW2 2564 aaPredicted RBP10.16□□□□□ -0.78
USP49-201ENST00000373006 FAM236AA0A1B0GUQ0 79 aa10.16□□□□□ -0.78
USP49-201ENST00000373006 FAM236BA0A1B0GV22 79 aa10.16□□□□□ -0.78
USP49-201ENST00000373006 M0QY20 66 aa10.16□□□□□ -0.78
USP49-201ENST00000373006 LGALS9O00182 355 aa10.15□□□□□ -0.78
USP49-201ENST00000373006 LINC00694P0DN24 101 aa10.15□□□□□ -0.78
USP49-201ENST00000373006 RNASE13Q5GAN3 156 aaKnown RBP10.15□□□□□ -0.78
USP49-201ENST00000373006 ITPR1Q14643 2758 aa10.14□□□□□ -0.79
USP49-201ENST00000373006 CEMP1Q6PRD7 247 aaPredicted RBP10.14□□□□□ -0.79
USP49-201ENST00000373006 CLEC2BQ92478 149 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms