RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 SNAI2O43623 268 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 PPBPP02775 128 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 CRYGDP07320 174 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 P0DMU3 169 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 FAM231AP0DMU4 169 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 FAM231CP0DMU5 169 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 CFAP126Q5VTH2 177 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 UFSP1Q6NVU6 142 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 DEFB104AQ8WTQ1 72 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 KIF25-AS1Q9Y6Z4 181 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 LOC100131303A0A0U1RQF7 123 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 SMIM27A0A1W2PRY6 76 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 TRGC1P0CF51 173 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 RIGQ13278 110 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 HIST3H2BBQ8N257 126 aa2.83□□□□□ -1.96
LIG4-201ENST00000356922 C11orf68Q9H3H3 251 aaKnown RBP2.83□□□□□ -1.96
LIG4-201ENST00000356922 A0A096LPF7 62 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 A0A1B0GV72 72 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 F2Z2F3 143 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 SCGB1D1O95968 90 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 OR5AL1P0C617 328 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 C14orf178Q8N769 122 aaPredicted RBP2.82□□□□□ -1.96
LIG4-201ENST00000356922 TSKUQ8WUA8 353 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 ANAPC16Q96DE5 110 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 VSIG2Q96IQ7 327 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 AP1S3Q96PC3 154 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 NAT8BQ9UHF3 227 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 FAT2Q9NYQ8 4349 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 IFITM10A6NMD0 228 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 LYRM9A8MSI8 78 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 K7EP13 123 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 PAX4O43316 350 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 FHL2Q14192 279 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 PRADC1Q9BSG0 188 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 CTDSP1Q9GZU7 261 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 TRAV26-2A0A0B4J265 109 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 A0A1B0GUT8 65 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 SMCPP49901 116 aaPredicted RBP2.82□□□□□ -1.96
LIG4-201ENST00000356922 PHLDA1Q8WV24 401 aaPredicted RBP2.82□□□□□ -1.96
LIG4-201ENST00000356922 CNFNQ9BYD5 112 aa2.82□□□□□ -1.96
LIG4-201ENST00000356922 A8MWV9 139 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 NXPH4O95158 308 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 CXCL1P09341 107 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 GATA1P15976 413 aaPredicted RBP2.81□□□□□ -1.96
LIG4-201ENST00000356922 CTRLP40313 264 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 WWC2-AS2Q96NR7 200 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 YPEL4Q96NS1 127 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST1H2BLQ99880 126 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 TNFRSF18Q9Y5U5 241 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 IGHV4-4A0A075B6R2 117 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 TRAV26-1A0A087WT03 109 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 TGIF2-C20orf24A0A0A6YYL0 155 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 TRAV10A0A0B4J240 114 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST1H2BKO60814 126 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST1H2BJP06899 126 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST1H2BOP23527 126 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST1H2BBP33778 126 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST1H2BDP58876 126 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST1H2BCP62807 126 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 CACNG7P62955 275 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST2H2BEQ16778 126 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.81□□□□□ -1.96
LIG4-201ENST00000356922 SLC25A29Q8N8R3 303 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST1H2BHQ93079 126 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 TMEM18Q96B42 140 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST1H2BNQ99877 126 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HIST1H2BMQ99879 126 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 HHLA3Q9XRX5 114 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 PKHD1P08F94 4074 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 TMEM262E9PQX1 116 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 H7C1H1 209 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 SRIP30626 198 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 LGALS9BQ3B8N2 356 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 CT83Q5H943 113 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 RNF185Q96GF1 192 aa2.81□□□□□ -1.96
LIG4-201ENST00000356922 A0A1B0GXF2 115 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 GAGE12JA6NER3 117 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 SMKR1H3BMG3 65 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 RS1O15537 224 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 TRGC2P03986 189 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 GAGE4Q13068 117 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 GAGE5Q13069 117 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 SLAQ13239 276 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 UBE2V1Q13404 147 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 ELOBQ15370 118 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 GAGE13Q4V321 117 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 AMN1Q8IY45 258 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 ORAOV1Q8WV07 137 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 BTF3L4Q96K17 158 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 CKS2P33552 79 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 VAMP3Q15836 100 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 MUC7Q8TAX7 377 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 DNAH6Q9C0G6 4158 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 NUPR2A6NF83 97 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 RHODO00212 210 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 CCL25O15444 150 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 GYPEP15421 78 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 RPL36AP83881 106 aaKnown RBP2.8□□□□□ -1.96
LIG4-201ENST00000356922 CASC10Q5T4H9 136 aa2.8□□□□□ -1.96
LIG4-201ENST00000356922 RPL36ALQ969Q0 106 aaKnown RBP2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms