RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 A0A1B0GXF2 115 aa6.62□□□□□ -1.35
USP4-202ENST00000351842 LINC01559Q495D7 138 aa6.62□□□□□ -1.35
USP4-202ENST00000351842 ATP5L2Q7Z4Y8 100 aa6.62□□□□□ -1.35
USP4-202ENST00000351842 AMN1Q8IY45 258 aa6.62□□□□□ -1.35
USP4-202ENST00000351842 A0A1B0GUT8 65 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 F2Z2F3 143 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 SMIM17P0DL12 118 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 P0DMU3 169 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 FAM231AP0DMU4 169 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 FAM231CP0DMU5 169 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 NIT1Q86X76 327 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 KIR2DL5BQ8NHK3 375 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 RNF183Q96D59 192 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 GATA1P15976 413 aaPredicted RBP6.61□□□□□ -1.35
USP4-202ENST00000351842 TMEM263Q8WUH6 116 aaKnown RBP6.61□□□□□ -1.35
USP4-202ENST00000351842 ODF3Q96PU9 254 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 F5H768 121 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 DAD1P61803 113 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 ZNF575Q86XF7 245 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 Q9UF83 564 aa6.61□□□□□ -1.35
USP4-202ENST00000351842 HUWE1Q7Z6Z7 4374 aaKnown RBP6.6□□□□□ -1.35
USP4-202ENST00000351842 GAS8-AS1O95177 125 aa6.6□□□□□ -1.35
USP4-202ENST00000351842 SPATA25Q9BR10 227 aa6.6□□□□□ -1.35
USP4-202ENST00000351842 UQCR10Q9UDW1 63 aa6.6□□□□□ -1.35
USP4-202ENST00000351842 LOC389332A0A1B0GUA5 103 aa6.59□□□□□ -1.35
USP4-202ENST00000351842 FAM231BA6NCW3 169 aa6.59□□□□□ -1.35
USP4-202ENST00000351842 NEGR1Q7Z3B1 354 aa6.59□□□□□ -1.35
USP4-202ENST00000351842 GATD1Q8NB37 220 aa6.59□□□□□ -1.35
USP4-202ENST00000351842 GFRA4Q9GZZ7 299 aa6.59□□□□□ -1.35
USP4-202ENST00000351842 TRGV4A0A0C4DH28 118 aa6.59□□□□□ -1.35
USP4-202ENST00000351842 Q6ZTC4 211 aa6.59□□□□□ -1.35
USP4-202ENST00000351842 C11orf72Q8NBR9 251 aa6.59□□□□□ -1.35
USP4-202ENST00000351842 C18orf32Q8TCD1 76 aa6.59□□□□□ -1.35
USP4-202ENST00000351842 C16orf74Q96GX8 76 aa6.59□□□□□ -1.35
USP4-202ENST00000351842 DNAH9Q9NYC9 4486 aa6.59□□□□□ -1.35
USP4-202ENST00000351842 KPRPQ5T749 579 aaPredicted RBP6.59□□□□□ -1.36
USP4-202ENST00000351842 ZFAND6Q6FIF0 208 aa6.59□□□□□ -1.36
USP4-202ENST00000351842 BAGE3Q86Y29 109 aa6.59□□□□□ -1.36
USP4-202ENST00000351842 Q8NAQ8 132 aa6.59□□□□□ -1.36
USP4-202ENST00000351842 IGHV3-38A0A0C4DH36 116 aa6.58□□□□□ -1.36
USP4-202ENST00000351842 M0R2P5 195 aa6.58□□□□□ -1.36
USP4-202ENST00000351842 SYT8Q8NBV8 401 aa6.58□□□□□ -1.36
USP4-202ENST00000351842 TRBV7-9A0A0J9YWB2 115 aa6.58□□□□□ -1.36
USP4-202ENST00000351842 LOC100131303A0A0U1RQF7 123 aa6.58□□□□□ -1.36
USP4-202ENST00000351842 A8MTW9 85 aa6.58□□□□□ -1.36
USP4-202ENST00000351842 APCSP02743 223 aa6.58□□□□□ -1.36
USP4-202ENST00000351842 HBBP68871 147 aa6.58□□□□□ -1.36
USP4-202ENST00000351842 RIGQ13278 110 aa6.58□□□□□ -1.36
USP4-202ENST00000351842 SPATA45Q537H7 98 aa6.58□□□□□ -1.36
USP4-202ENST00000351842 IGLC6P0CF74 106 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 C11orf45Q8TAV5 145 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 PHLDA1Q8WV24 401 aaPredicted RBP6.57□□□□□ -1.36
USP4-202ENST00000351842 PLAC8L1A1L4L8 177 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 IGLC3P0DOY3 106 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 SCGB1A1P11684 91 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 SMAGPQ0VAQ4 97 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 AP1S3Q96PC3 154 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 SPART-AS1P0CW21 52 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 SRIP30626 198 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 CKS1BP61024 79 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 AMMECR1LQ6DCA0 310 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 Q6ZSN1 163 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 DKK2Q9UBU2 259 aa6.57□□□□□ -1.36
USP4-202ENST00000351842 RPL39LQ96EH5 51 aaKnown RBP6.56□□□□□ -1.36
USP4-202ENST00000351842 NUDT3O95989 172 aa6.56□□□□□ -1.36
USP4-202ENST00000351842 C3orf79P0CE67 100 aa6.56□□□□□ -1.36
USP4-202ENST00000351842 MIFP14174 115 aa6.56□□□□□ -1.36
USP4-202ENST00000351842 CKS2P33552 79 aa6.56□□□□□ -1.36
USP4-202ENST00000351842 POM121L12Q8N7R1 296 aa6.56□□□□□ -1.36
USP4-202ENST00000351842 URB1-AS1Q96HZ7 61 aa6.56□□□□□ -1.36
USP4-202ENST00000351842 B9D2Q9BPU9 175 aa6.56□□□□□ -1.36
USP4-202ENST00000351842 LYSTQ99698 3801 aa6.56□□□□□ -1.36
USP4-202ENST00000351842 GAGE12JA6NER3 117 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 D6R8Y8 96 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 GAGE4Q13068 117 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 GAGE5Q13069 117 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 GAGE13Q4V321 117 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 GTSF1LQ9H1H1 148 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 PGPEP1Q9NXJ5 209 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 PMCHL1Q16048 86 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 ZNF493Q6ZR52 646 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 COX8CQ7Z4L0 72 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 C9orf85Q96MD7 179 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 OR5AL1P0C617 328 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 CFAP126Q5VTH2 177 aa6.55□□□□□ -1.36
USP4-202ENST00000351842 MRPS16Q9Y3D3 137 aaKnown RBP6.55□□□□□ -1.36
USP4-202ENST00000351842 IGLL5B9A064 214 aa6.54□□□□□ -1.36
USP4-202ENST00000351842 AMTP48728 403 aa6.54□□□□□ -1.36
USP4-202ENST00000351842 HERV-K104P63124 156 aa6.54□□□□□ -1.36
USP4-202ENST00000351842 TM2D3Q9BRN9 247 aa6.54□□□□□ -1.36
USP4-202ENST00000351842 CHCHD1Q96BP2 118 aaKnown RBP6.54□□□□□ -1.36
USP4-202ENST00000351842 C12orf74Q32Q52 190 aa6.54□□□□□ -1.36
USP4-202ENST00000351842 U3KQK5 164 aa6.54□□□□□ -1.36
USP4-202ENST00000351842 KRTDAPP60985 99 aa6.53□□□□□ -1.36
USP4-202ENST00000351842 DEFB131BA0A096LNP1 70 aa6.53□□□□□ -1.36
USP4-202ENST00000351842 TAX1BP3O14907 124 aa6.53□□□□□ -1.36
USP4-202ENST00000351842 MRPL51Q4U2R6 128 aaKnown RBP6.53□□□□□ -1.36
USP4-202ENST00000351842 SUMO4Q6EEV6 95 aa6.53□□□□□ -1.36
USP4-202ENST00000351842 SLC25A29Q8N8R3 303 aa6.53□□□□□ -1.36
USP4-202ENST00000351842 ZNRF2Q8NHG8 242 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 137.9 ms