RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 SPCS1Q9Y6A9 102 aa10.97□□□□□ -0.65
VIPAS39-202ENST00000343765 HECTD1Q9ULT8 2610 aa10.97□□□□□ -0.65
VIPAS39-202ENST00000343765 RBMY1BA6NDE4 496 aaKnown RBP10.96□□□□□ -0.65
VIPAS39-202ENST00000343765 RBMY1EA6NEQ0 496 aaKnown RBP10.96□□□□□ -0.65
VIPAS39-202ENST00000343765 K7EP34 96 aa10.96□□□□□ -0.65
VIPAS39-202ENST00000343765 RBMY1DP0C7P1 496 aaKnown RBP10.96□□□□□ -0.65
VIPAS39-202ENST00000343765 RPL32P62910 135 aaKnown RBP10.96□□□□□ -0.65
VIPAS39-202ENST00000343765 SCGB2A2Q13296 93 aa10.96□□□□□ -0.65
VIPAS39-202ENST00000343765 SAMD5Q5TGI4 173 aa10.96□□□□□ -0.65
VIPAS39-202ENST00000343765 DYNLRB2Q8TF09 96 aa10.96□□□□□ -0.65
VIPAS39-202ENST00000343765 OPRPNQ99935 248 aaPredicted RBP10.96□□□□□ -0.65
VIPAS39-202ENST00000343765 TRGV11A0A075B6L2 103 aa10.96□□□□□ -0.66
VIPAS39-202ENST00000343765 TRBV27A0A0K0K1C4 114 aa10.96□□□□□ -0.66
VIPAS39-202ENST00000343765 UFSP1Q6NVU6 142 aa10.96□□□□□ -0.66
VIPAS39-202ENST00000343765 WFDC11Q8NEX6 87 aa10.96□□□□□ -0.66
VIPAS39-202ENST00000343765 IGLV4-69A0A075B6H9 119 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 RBX1P62877 108 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 TM2D2Q9BX73 214 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 A0A1W2PRX2 142 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 ZNF815PA8K554 130 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 H3BMM0 161 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 P0DMU3 169 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 FAM231AP0DMU4 169 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 FAM231CP0DMU5 169 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 FABP2P12104 132 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 PMVKQ15126 192 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 LRRC75A-AS1Q8N1F1 130 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 Q8N2B8 174 aa10.95□□□□□ -0.66
VIPAS39-202ENST00000343765 E9PLD3 99 aa10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 PROK1P58294 105 aa10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 TRPT1Q86TN4 253 aaKnown RBP10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 C4orf3Q8WVX3 66 aa10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 PEMTQ9UBM1 199 aa10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 TRBV6-5A0A0K0K1A5 114 aa10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 CBY1Q9Y3M2 126 aa10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 FASNP49327 2511 aaKnown RBP10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 PDZD2O15018 2839 aa10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 OCIAD2Q56VL3 154 aa10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 TMEM170BQ5T4T1 132 aa10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 SCGB1D4Q6XE38 83 aa10.94□□□□□ -0.66
VIPAS39-202ENST00000343765 PHLDA1Q8WV24 401 aaPredicted RBP10.93□□□□□ -0.66
VIPAS39-202ENST00000343765 PLEKHB2Q96CS7 222 aa10.93□□□□□ -0.66
VIPAS39-202ENST00000343765 TMEM141Q96I45 108 aa10.93□□□□□ -0.66
VIPAS39-202ENST00000343765 RIPPLY3P57055 190 aa10.92□□□□□ -0.66
VIPAS39-202ENST00000343765 TIMM17AQ99595 171 aa10.92□□□□□ -0.66
VIPAS39-202ENST00000343765 MAP6D1Q9H9H5 199 aa10.92□□□□□ -0.66
VIPAS39-202ENST00000343765 TRBV7-3A0A075B6L6 115 aa10.92□□□□□ -0.66
VIPAS39-202ENST00000343765 Q6ZSV7 163 aa10.92□□□□□ -0.66
VIPAS39-202ENST00000343765 C12orf74Q32Q52 190 aa10.91□□□□□ -0.66
VIPAS39-202ENST00000343765 ZNRF2Q8NHG8 242 aa10.91□□□□□ -0.66
VIPAS39-202ENST00000343765 TAL2Q16559 108 aa10.91□□□□□ -0.66
VIPAS39-202ENST00000343765 DNAJC9-AS1A6NH13 148 aa10.9□□□□□ -0.66
VIPAS39-202ENST00000343765 SAP30O75446 220 aa10.9□□□□□ -0.66
VIPAS39-202ENST00000343765 I3L3M4 83 aa10.9□□□□□ -0.66
VIPAS39-202ENST00000343765 HERVK_113P61574 105 aa10.9□□□□□ -0.66
VIPAS39-202ENST00000343765 Q9UF83 564 aa10.9□□□□□ -0.66
VIPAS39-202ENST00000343765 DEFB114Q30KQ6 69 aa10.89□□□□□ -0.67
VIPAS39-202ENST00000343765 LINC01587Q99440 93 aa10.89□□□□□ -0.67
VIPAS39-202ENST00000343765 SETXQ7Z333 2677 aaKnown RBP10.89□□□□□ -0.67
VIPAS39-202ENST00000343765 GCN1Q92616 2671 aaKnown RBP10.89□□□□□ -0.67
VIPAS39-202ENST00000343765 TSPEAR-AS2P59090 65 aa10.89□□□□□ -0.67
VIPAS39-202ENST00000343765 RHOHQ15669 191 aa10.89□□□□□ -0.67
VIPAS39-202ENST00000343765 NSUN5P1Q3KNT7 163 aa10.89□□□□□ -0.67
VIPAS39-202ENST00000343765 UNC79Q9P2D8 2635 aa10.89□□□□□ -0.67
VIPAS39-202ENST00000343765 LINC01549A6NIU2 74 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 IGLL5B9A064 214 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 SRSF9Q13242 221 aaKnown RBP eCLIP10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 C21orf62-AS1Q17RA5 79 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 SPAG8Q99932 426 aaPredicted RBP10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 NACAE9PAV3 2078 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 IGHV3-64A0A075B6Q5 118 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 PAPPA-AS1Q5QFB9 102 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 ZNF479Q96JC4 524 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 IGHV3OR16-12A0A075B7B8 117 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 C20orf203Q8NBC4 194 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 OR5A1Q8NGJ0 315 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 RAX2Q96IS3 184 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 ESM1Q9NQ30 184 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 MRPL16Q9NX20 251 aaKnown RBP10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 C2CD3Q4AC94 2353 aa10.88□□□□□ -0.67
VIPAS39-202ENST00000343765 Q6ZSN1 163 aa10.87□□□□□ -0.67
VIPAS39-202ENST00000343765 VPS25Q9BRG1 176 aa10.87□□□□□ -0.67
VIPAS39-202ENST00000343765 XCL2Q9UBD3 114 aa10.87□□□□□ -0.67
VIPAS39-202ENST00000343765 M0R2P5 195 aa10.87□□□□□ -0.67
VIPAS39-202ENST00000343765 ZNF415Q09FC8 603 aa10.87□□□□□ -0.67
VIPAS39-202ENST00000343765 CD28P10747 220 aa10.86□□□□□ -0.67
VIPAS39-202ENST00000343765 CEMP1Q6PRD7 247 aaPredicted RBP10.86□□□□□ -0.67
VIPAS39-202ENST00000343765 RNASE13Q5GAN3 156 aaKnown RBP10.86□□□□□ -0.67
VIPAS39-202ENST00000343765 TNFRSF18Q9Y5U5 241 aa10.86□□□□□ -0.67
VIPAS39-202ENST00000343765 A8MTW9 85 aa10.85□□□□□ -0.67
VIPAS39-202ENST00000343765 IGLV4-3A0A075B6K6 122 aa10.85□□□□□ -0.67
VIPAS39-202ENST00000343765 TRAV2A0A0B4J234 112 aa10.85□□□□□ -0.67
VIPAS39-202ENST00000343765 A0A0J9YXV3 536 aa10.84□□□□□ -0.67
VIPAS39-202ENST00000343765 K7ERU9 68 aa10.84□□□□□ -0.67
VIPAS39-202ENST00000343765 INSP01308 110 aa10.84□□□□□ -0.67
VIPAS39-202ENST00000343765 VCX2Q9H322 139 aa10.84□□□□□ -0.67
VIPAS39-202ENST00000343765 A8MWV9 139 aa10.84□□□□□ -0.67
VIPAS39-202ENST00000343765 ODF3L2Q3SX64 289 aa10.84□□□□□ -0.67
VIPAS39-202ENST00000343765 SFTA2Q6UW10 78 aa10.84□□□□□ -0.67
VIPAS39-202ENST00000343765 ANK3Q12955 4377 aaKnown RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms