RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 F8VRH5 84 aa9.05□□□□□ -0.96
USP1-201ENST00000339950 MT-ATP8P03928 68 aa9.05□□□□□ -0.96
USP1-201ENST00000339950 C11orf71Q6IPW1 123 aa9.05□□□□□ -0.96
USP1-201ENST00000339950 TNFRSF18Q9Y5U5 241 aa9.05□□□□□ -0.96
USP1-201ENST00000339950 SLURP1P55000 103 aa9.05□□□□□ -0.96
USP1-201ENST00000339950 RNF183Q96D59 192 aa9.05□□□□□ -0.96
USP1-201ENST00000339950 CD28P10747 220 aa9.04□□□□□ -0.96
USP1-201ENST00000339950 PROK1P58294 105 aa9.04□□□□□ -0.96
USP1-201ENST00000339950 LINC01559Q495D7 138 aa9.04□□□□□ -0.96
USP1-201ENST00000339950 ZFP2Q6ZN57 461 aa9.04□□□□□ -0.96
USP1-201ENST00000339950 TOMM7Q9P0U1 55 aa9.04□□□□□ -0.96
USP1-201ENST00000339950 COX6B1P14854 86 aa9.04□□□□□ -0.96
USP1-201ENST00000339950 PPDPFLQ8WWR9 84 aa9.04□□□□□ -0.96
USP1-201ENST00000339950 PLEKHB2Q96CS7 222 aa9.04□□□□□ -0.96
USP1-201ENST00000339950 A0A087WX48 190 aa9.03□□□□□ -0.96
USP1-201ENST00000339950 IGHV7-4-1A0A0J9YVY3 117 aa9.03□□□□□ -0.96
USP1-201ENST00000339950 TCTEX1D4Q5JR98 221 aa9.03□□□□□ -0.96
USP1-201ENST00000339950 DAND5Q8N907 189 aa9.03□□□□□ -0.96
USP1-201ENST00000339950 C16orf54Q6UWD8 224 aa9.03□□□□□ -0.96
USP1-201ENST00000339950 RASL10AQ92737 203 aa9.03□□□□□ -0.96
USP1-201ENST00000339950 B4DSR2 109 aa9.03□□□□□ -0.96
USP1-201ENST00000339950 C18orf65Q6ZTR6 163 aa9.03□□□□□ -0.96
USP1-201ENST00000339950 CITED1Q99966 193 aa9.03□□□□□ -0.96
USP1-201ENST00000339950 SUMO4Q6EEV6 95 aa9.02□□□□□ -0.97
USP1-201ENST00000339950 C1QTNF4Q9BXJ3 329 aa9.02□□□□□ -0.97
USP1-201ENST00000339950 C11orf68Q9H3H3 251 aaKnown RBP9.02□□□□□ -0.97
USP1-201ENST00000339950 A0A0J9YXV3 536 aa9.02□□□□□ -0.97
USP1-201ENST00000339950 C11orf86A6NJI1 115 aa9.02□□□□□ -0.97
USP1-201ENST00000339950 SLC25A20O43772 301 aa9.02□□□□□ -0.97
USP1-201ENST00000339950 Q8N1Y9 231 aa9.02□□□□□ -0.97
USP1-201ENST00000339950 OR13C6PQ8NH95 151 aa9.02□□□□□ -0.97
USP1-201ENST00000339950 CELSR2Q9HCU4 2923 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 TRAV13-1A0A0B4J241 112 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 TRBV6-1A0A0K0K1D8 114 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 NDUFA4O00483 81 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 SIVA1O15304 175 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 FOXI1Q12951 378 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 GCN1Q92616 2671 aaKnown RBP9.01□□□□□ -0.97
USP1-201ENST00000339950 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.01□□□□□ -0.97
USP1-201ENST00000339950 IGKV2-29A2NJV5 120 aaPredicted RBP9.01□□□□□ -0.97
USP1-201ENST00000339950 FAM223BA6NKX1 122 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 A8MZ25 164 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 RPL35AP18077 110 aaKnown RBP9.01□□□□□ -0.97
USP1-201ENST00000339950 FAM223AQ8IWN6 122 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 Q8N6K4 173 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 ZFAND2AQ8N6M9 145 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 COL27A1Q8IZC6 1860 aaPredicted RBP9.01□□□□□ -0.97
USP1-201ENST00000339950 PPP1R17O96001 155 aa9.01□□□□□ -0.97
USP1-201ENST00000339950 FBXL19-AS1Q494R0 122 aa9□□□□□ -0.97
USP1-201ENST00000339950 BAALCQ8WXS3 180 aa9□□□□□ -0.97
USP1-201ENST00000339950 VCYO14598 125 aa9□□□□□ -0.97
USP1-201ENST00000339950 U3KQK5 164 aa9□□□□□ -0.97
USP1-201ENST00000339950 IGHV4OR15-8A0A075B7B6 117 aa8.99□□□□□ -0.97
USP1-201ENST00000339950 A0A087WW49 117 aa8.99□□□□□ -0.97
USP1-201ENST00000339950 TRGV1A0A0A0MS02 117 aa8.99□□□□□ -0.97
USP1-201ENST00000339950 HOXD3P31249 432 aaPredicted RBP8.99□□□□□ -0.97
USP1-201ENST00000339950 GAGE5Q13069 117 aa8.99□□□□□ -0.97
USP1-201ENST00000339950 GAGE6Q13070 117 aa8.99□□□□□ -0.97
USP1-201ENST00000339950 M0R2P5 195 aa8.99□□□□□ -0.97
USP1-201ENST00000339950 TRPT1Q86TN4 253 aaKnown RBP8.99□□□□□ -0.97
USP1-201ENST00000339950 RBAKDNA6NC62 111 aa8.99□□□□□ -0.97
USP1-201ENST00000339950 DNAL4O96015 105 aa8.99□□□□□ -0.97
USP1-201ENST00000339950 TMEM190Q8WZ59 177 aa8.99□□□□□ -0.97
USP1-201ENST00000339950 USMG5Q96IX5 58 aa8.99□□□□□ -0.97
USP1-201ENST00000339950 SPANXB1Q9NS25 103 aaPredicted RBP8.99□□□□□ -0.97
USP1-201ENST00000339950 PRO1854Q9UHT4 67 aa8.99□□□□□ -0.97
USP1-201ENST00000339950 GAGE12JA6NER3 117 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 GAGE7O76087 117 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 GAGE12FP0CL80 117 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 GAGE12GP0CL81 117 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 GAGE12IP0CL82 117 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 SRSF2Q01130 221 aaKnown RBP8.98□□□□□ -0.97
USP1-201ENST00000339950 GAGE4Q13068 117 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 NRACQ8N912 160 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 C15orf53Q8NAA6 179 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 EDA2RQ9HAV5 297 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 HHLA3Q9XRX5 114 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 CIRBPQ14011 172 aaKnown RBP8.98□□□□□ -0.97
USP1-201ENST00000339950 C9orf47Q6ZRZ4 202 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 CSMD2Q7Z408 3487 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 HELZ2Q9BYK8 2649 aaKnown RBP8.98□□□□□ -0.97
USP1-201ENST00000339950 ATRQ13535 2644 aa8.98□□□□□ -0.97
USP1-201ENST00000339950 C10orf105Q8TEF2 133 aa8.97□□□□□ -0.97
USP1-201ENST00000339950 ZNF580Q9UK33 172 aa8.97□□□□□ -0.97
USP1-201ENST00000339950 IFITM1P13164 125 aa8.97□□□□□ -0.97
USP1-201ENST00000339950 ANKRD29Q8N6D5 301 aa8.97□□□□□ -0.97
USP1-201ENST00000339950 TEP1Q99973 2627 aaKnown RBP8.97□□□□□ -0.97
USP1-201ENST00000339950 IGHV1OR15-1A0A075B7D0 117 aa8.97□□□□□ -0.97
USP1-201ENST00000339950 NSUN5P1Q3KNT7 163 aa8.97□□□□□ -0.97
USP1-201ENST00000339950 LGALS1P09382 135 aaKnown RBP8.96□□□□□ -0.97
USP1-201ENST00000339950 PMVKQ15126 192 aa8.96□□□□□ -0.98
USP1-201ENST00000339950 MRPL23Q16540 153 aaKnown RBP8.96□□□□□ -0.98
USP1-201ENST00000339950 RNASE3P12724 160 aaKnown RBP8.96□□□□□ -0.98
USP1-201ENST00000339950 HERV-K104P63124 156 aa8.96□□□□□ -0.98
USP1-201ENST00000339950 PAPPA-AS1Q5QFB9 102 aa8.96□□□□□ -0.98
USP1-201ENST00000339950 TRGV2A0A075B6R0 118 aa8.95□□□□□ -0.98
USP1-201ENST00000339950 A0A096LPF7 62 aa8.95□□□□□ -0.98
USP1-201ENST00000339950 A4D1N5 150 aa8.95□□□□□ -0.98
USP1-201ENST00000339950 EBI3Q14213 229 aa8.95□□□□□ -0.98
USP1-201ENST00000339950 J3QQQ9 107 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 177 ms