RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.66□□□□□ -0.86
SDC3-201ENST00000336798 E7EUB6 86 aa9.66□□□□□ -0.86
SDC3-201ENST00000336798 IGLV3-1P01715 115 aa9.66□□□□□ -0.86
SDC3-201ENST00000336798 RETNQ9HD89 108 aa9.66□□□□□ -0.86
SDC3-201ENST00000336798 SIP14410 1827 aa9.66□□□□□ -0.86
SDC3-201ENST00000336798 WI2-2373I1.2A0A1W2PRP0 233 aa9.66□□□□□ -0.86
SDC3-201ENST00000336798 LINC00269Q8N2A0 174 aa9.66□□□□□ -0.86
SDC3-201ENST00000336798 SPANXB1Q9NS25 103 aaPredicted RBP9.66□□□□□ -0.86
SDC3-201ENST00000336798 A0A087WZ39 114 aa9.65□□□□□ -0.86
SDC3-201ENST00000336798 UQCRQO14949 82 aa9.65□□□□□ -0.86
SDC3-201ENST00000336798 CASC2Q6XLA1 102 aa9.65□□□□□ -0.86
SDC3-201ENST00000336798 SPATA12Q7Z6I5 190 aa9.65□□□□□ -0.86
SDC3-201ENST00000336798 NFE4Q86UQ8 179 aa9.65□□□□□ -0.86
SDC3-201ENST00000336798 LINC00694P0DN24 101 aa9.65□□□□□ -0.86
SDC3-201ENST00000336798 FAM240AA0A1B0GVK7 77 aa9.65□□□□□ -0.87
SDC3-201ENST00000336798 TOMM6Q96B49 74 aa9.65□□□□□ -0.87
SDC3-201ENST00000336798 FAM236DA0A1B0GTK5 79 aa9.64□□□□□ -0.87
SDC3-201ENST00000336798 FAM236CP0DP71 79 aa9.64□□□□□ -0.87
SDC3-201ENST00000336798 A0A0J9YWU9 116 aa9.64□□□□□ -0.87
SDC3-201ENST00000336798 SCXQ7RTU7 201 aa9.64□□□□□ -0.87
SDC3-201ENST00000336798 SPTAN1Q13813 2472 aaKnown RBP9.64□□□□□ -0.87
SDC3-201ENST00000336798 TEX22C9J3V5 150 aa9.64□□□□□ -0.87
SDC3-201ENST00000336798 WISP2O76076 250 aa9.64□□□□□ -0.87
SDC3-201ENST00000336798 ZGRF1Q86YA3 2104 aa9.64□□□□□ -0.87
SDC3-201ENST00000336798 COX7BP24311 80 aa9.64□□□□□ -0.87
SDC3-201ENST00000336798 FAM19A1Q7Z5A9 133 aa9.64□□□□□ -0.87
SDC3-201ENST00000336798 TRAV23DV6A0A075B6W5 121 aa9.63□□□□□ -0.87
SDC3-201ENST00000336798 C11orf86A6NJI1 115 aa9.63□□□□□ -0.87
SDC3-201ENST00000336798 MAP6D1Q9H9H5 199 aa9.63□□□□□ -0.87
SDC3-201ENST00000336798 SMIM9A6NGZ8 99 aa9.63□□□□□ -0.87
SDC3-201ENST00000336798 NDUFC2-KCTD14E9PQ53 114 aa9.63□□□□□ -0.87
SDC3-201ENST00000336798 HRCT1Q6UXD1 115 aa9.63□□□□□ -0.87
SDC3-201ENST00000336798 M0R2N4 97 aa9.63□□□□□ -0.87
SDC3-201ENST00000336798 MLST8Q9BVC4 326 aa9.63□□□□□ -0.87
SDC3-201ENST00000336798 INAFM1C9JVW0 142 aa9.62□□□□□ -0.87
SDC3-201ENST00000336798 LINC01545Q5VT33 79 aa9.62□□□□□ -0.87
SDC3-201ENST00000336798 PLXNA4Q9HCM2 1894 aa9.62□□□□□ -0.87
SDC3-201ENST00000336798 TMEM263Q8WUH6 116 aaKnown RBP9.62□□□□□ -0.87
SDC3-201ENST00000336798 CRYGDP07320 174 aa9.62□□□□□ -0.87
SDC3-201ENST00000336798 Q6ZTI0 123 aa9.62□□□□□ -0.87
SDC3-201ENST00000336798 FAM19A5Q7Z5A7 132 aaPredicted RBP9.62□□□□□ -0.87
SDC3-201ENST00000336798 PRO0255Q9UI72 69 aa9.62□□□□□ -0.87
SDC3-201ENST00000336798 NDUFA7O95182 113 aa9.61□□□□□ -0.87
SDC3-201ENST00000336798 MGAMO43451 1857 aa9.61□□□□□ -0.87
SDC3-201ENST00000336798 IGLV2-18A0A075B6J9 118 aa9.61□□□□□ -0.87
SDC3-201ENST00000336798 IGKV1D-37A0A075B6S9 117 aa9.61□□□□□ -0.87
SDC3-201ENST00000336798 LINC01548A6NM66 108 aa9.61□□□□□ -0.87
SDC3-201ENST00000336798 FRMD6-AS1P0C7T7 363 aa9.61□□□□□ -0.87
SDC3-201ENST00000336798 LINC00482Q8N8I6 264 aa9.61□□□□□ -0.87
SDC3-201ENST00000336798 RIF1Q5UIP0 2472 aaKnown RBP9.61□□□□□ -0.87
SDC3-201ENST00000336798 NBASA2RRP1 2371 aa9.61□□□□□ -0.87
SDC3-201ENST00000336798 PCNX1Q96RV3 2341 aa9.6□□□□□ -0.87
SDC3-201ENST00000336798 LYPD6Q86Y78 171 aa9.6□□□□□ -0.87
SDC3-201ENST00000336798 TRBV10-2A0A0K0K1G8 114 aa9.6□□□□□ -0.87
SDC3-201ENST00000336798 REG3AQ06141 175 aa9.6□□□□□ -0.87
SDC3-201ENST00000336798 C20orf173Q96LM9 149 aa9.6□□□□□ -0.87
SDC3-201ENST00000336798 UPK3BQ9BT76 320 aa9.6□□□□□ -0.87
SDC3-201ENST00000336798 JMJD7-PLA2G4BH0Y9G9 81 aa9.6□□□□□ -0.87
SDC3-201ENST00000336798 TP73-AS1Q9UF72 201 aa9.6□□□□□ -0.87
SDC3-201ENST00000336798 TRBV6-1A0A0K0K1D8 114 aa9.6□□□□□ -0.87
SDC3-201ENST00000336798 SLPIP03973 132 aa9.6□□□□□ -0.87
SDC3-201ENST00000336798 FAM222AQ5U5X8 452 aa9.6□□□□□ -0.87
SDC3-201ENST00000336798 PLA2G2EQ9NZK7 142 aa9.59□□□□□ -0.87
SDC3-201ENST00000336798 WFDC10BQ8IUB3 73 aa9.59□□□□□ -0.87
SDC3-201ENST00000336798 TMEM256-PLSCR3K7ERE1 68 aa9.59□□□□□ -0.87
SDC3-201ENST00000336798 CXCL5P42830 114 aa9.59□□□□□ -0.87
SDC3-201ENST00000336798 LRRC75A-AS1Q8N1F1 130 aa9.59□□□□□ -0.87
SDC3-201ENST00000336798 FAM167A-AS1Q96KT0 104 aa9.59□□□□□ -0.87
SDC3-201ENST00000336798 DENND4AQ7Z401 1863 aa9.59□□□□□ -0.87
SDC3-201ENST00000336798 H3BQ85 93 aa9.59□□□□□ -0.87
SDC3-201ENST00000336798 IGLC6P0CF74 106 aa9.59□□□□□ -0.87
SDC3-201ENST00000336798 IGFL2Q6UWQ7 119 aa9.59□□□□□ -0.87
SDC3-201ENST00000336798 DCANP1Q8TF63 244 aa9.59□□□□□ -0.87
SDC3-201ENST00000336798 IGHV1-58A0A0C4DH39 117 aa9.58□□□□□ -0.88
SDC3-201ENST00000336798 DEFB131BA0A096LNP1 70 aa9.58□□□□□ -0.88
SDC3-201ENST00000336798 C19orf84I3L1E1 186 aa9.58□□□□□ -0.88
SDC3-201ENST00000336798 K7EMT4 169 aa9.58□□□□□ -0.88
SDC3-201ENST00000336798 ODF3L1Q8IXM7 274 aa9.58□□□□□ -0.88
SDC3-201ENST00000336798 A0A0J9YX75 114 aa9.58□□□□□ -0.88
SDC3-201ENST00000336798 TCL1BO95988 128 aa9.58□□□□□ -0.88
SDC3-201ENST00000336798 MED13Q9UHV7 2174 aa9.57□□□□□ -0.88
SDC3-201ENST00000336798 MALRD1Q5VYJ5 2156 aa9.57□□□□□ -0.88
SDC3-201ENST00000336798 PLXNA2O75051 1894 aa9.57□□□□□ -0.88
SDC3-201ENST00000336798 PCNX2A6NKB5 2137 aa9.57□□□□□ -0.88
SDC3-201ENST00000336798 E9PLD3 99 aa9.57□□□□□ -0.88
SDC3-201ENST00000336798 PPDPFQ9H3Y8 114 aa9.57□□□□□ -0.88
SDC3-201ENST00000336798 TNRC6AQ8NDV7 1962 aaKnown RBP9.57□□□□□ -0.88
SDC3-201ENST00000336798 SPINK6Q6UWN8 80 aa9.57□□□□□ -0.88
SDC3-201ENST00000336798 HIGD1BQ9P298 99 aa9.57□□□□□ -0.88
SDC3-201ENST00000336798 A6NDX4 124 aa9.56□□□□□ -0.88
SDC3-201ENST00000336798 LOXL1Q08397 574 aaPredicted RBP9.56□□□□□ -0.88
SDC3-201ENST00000336798 IL15RAQ13261 267 aa9.56□□□□□ -0.88
SDC3-201ENST00000336798 BPY2O14599 106 aa9.56□□□□□ -0.88
SDC3-201ENST00000336798 ZFAND2AQ8N6M9 145 aa9.56□□□□□ -0.88
SDC3-201ENST00000336798 CHCHD10Q8WYQ3 142 aaPredicted RBP9.56□□□□□ -0.88
SDC3-201ENST00000336798 SDIM1Q6ZPB5 146 aa9.56□□□□□ -0.88
SDC3-201ENST00000336798 A0A1W2PNU3 283 aaPredicted RBP9.55□□□□□ -0.88
SDC3-201ENST00000336798 DAZAP2Q15038 168 aaPredicted RBP9.55□□□□□ -0.88
SDC3-201ENST00000336798 C20orf197Q8N268 126 aa9.55□□□□□ -0.88
SDC3-201ENST00000336798 XAGE1AQ9HD64 81 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms