RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 OR10J6PQ8NGY7 276 aa10.08□□□□□ -0.8
CCDC88C-201ENST00000331194 ODF3BA8MYP8 253 aa10.08□□□□□ -0.8
CCDC88C-201ENST00000331194 RPL11P62913 178 aaKnown RBP10.08□□□□□ -0.8
CCDC88C-201ENST00000331194 SUMO4Q6EEV6 95 aa10.08□□□□□ -0.8
CCDC88C-201ENST00000331194 PRSS2P07478 247 aa10.07□□□□□ -0.8
CCDC88C-201ENST00000331194 ZNF56Q15929 161 aa10.07□□□□□ -0.8
CCDC88C-201ENST00000331194 ZNF876PQ49A33 203 aa10.07□□□□□ -0.8
CCDC88C-201ENST00000331194 Q8N6K4 173 aa10.07□□□□□ -0.8
CCDC88C-201ENST00000331194 TRAV21A0A0B4J279 112 aa10.07□□□□□ -0.8
CCDC88C-201ENST00000331194 B9A039 149 aa10.07□□□□□ -0.8
CCDC88C-201ENST00000331194 SDHAF1A6NFY7 115 aa10.07□□□□□ -0.8
CCDC88C-201ENST00000331194 POLR2KP53803 58 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-201ENST00000331194 ATXN8Q156A1 80 aa10.07□□□□□ -0.8
CCDC88C-201ENST00000331194 CLEC2BQ92478 149 aa10.07□□□□□ -0.8
CCDC88C-201ENST00000331194 LINC01587Q99440 93 aa10.07□□□□□ -0.8
CCDC88C-201ENST00000331194 ABCA12Q86UK0 2595 aa10.06□□□□□ -0.8
CCDC88C-201ENST00000331194 SMIM9A6NGZ8 99 aa10.06□□□□□ -0.8
CCDC88C-201ENST00000331194 C2orf82Q6UX34 121 aa10.06□□□□□ -0.8
CCDC88C-201ENST00000331194 UNQ9165/PRO28630Q6UXU0 137 aa10.06□□□□□ -0.8
CCDC88C-201ENST00000331194 TMEM126AQ9H061 195 aa10.06□□□□□ -0.8
CCDC88C-201ENST00000331194 KIF25-AS1Q9Y6Z4 181 aa10.06□□□□□ -0.8
CCDC88C-201ENST00000331194 H3BMM0 161 aa10.06□□□□□ -0.8
CCDC88C-201ENST00000331194 TRBV12-3P01733 135 aa10.06□□□□□ -0.8
CCDC88C-201ENST00000331194 UBE2WQ96B02 151 aa10.06□□□□□ -0.8
CCDC88C-201ENST00000331194 USP9YO00507 2555 aaPredicted RBP10.06□□□□□ -0.8
CCDC88C-201ENST00000331194 A0A0J9YXV3 536 aa10.05□□□□□ -0.8
CCDC88C-201ENST00000331194 OOSP1A8MZH6 123 aa10.05□□□□□ -0.8
CCDC88C-201ENST00000331194 PAPPA-AS1Q5QFB9 102 aa10.05□□□□□ -0.8
CCDC88C-201ENST00000331194 FAM110DQ8TAY7 271 aaPredicted RBP10.05□□□□□ -0.8
CCDC88C-201ENST00000331194 MDFICQ9P1T7 246 aa10.05□□□□□ -0.8
CCDC88C-201ENST00000331194 H7C423 109 aa10.05□□□□□ -0.8
CCDC88C-201ENST00000331194 LGALS9O00182 355 aa10.05□□□□□ -0.8
CCDC88C-201ENST00000331194 ITLN2Q8WWU7 325 aaPredicted RBP10.05□□□□□ -0.8
CCDC88C-201ENST00000331194 KLK5Q9Y337 293 aaPredicted RBP10.05□□□□□ -0.8
CCDC88C-201ENST00000331194 CD3EP07766 207 aa10.05□□□□□ -0.8
CCDC88C-201ENST00000331194 UBE2E1P51965 193 aa10.05□□□□□ -0.8
CCDC88C-201ENST00000331194 TRBV10-2A0A0K0K1G8 114 aa10.04□□□□□ -0.8
CCDC88C-201ENST00000331194 A8MZ25 164 aa10.04□□□□□ -0.8
CCDC88C-201ENST00000331194 P0DMU3 169 aa10.04□□□□□ -0.8
CCDC88C-201ENST00000331194 FAM231AP0DMU4 169 aa10.04□□□□□ -0.8
CCDC88C-201ENST00000331194 FAM231CP0DMU5 169 aa10.04□□□□□ -0.8
CCDC88C-201ENST00000331194 ZNF22P17026 224 aaPredicted RBP10.04□□□□□ -0.8
CCDC88C-201ENST00000331194 TMEM223A0PJW6 202 aa10.04□□□□□ -0.8
CCDC88C-201ENST00000331194 Q6Q795 121 aa10.04□□□□□ -0.8
CCDC88C-201ENST00000331194 IGHV1-69DA0A0B4J2H0 117 aa10.03□□□□□ -0.8
CCDC88C-201ENST00000331194 ADAMTSL4-AS1Q5T5F5 129 aa10.03□□□□□ -0.8
CCDC88C-201ENST00000331194 TRAV8-3A0A0A6YYJ7 113 aa10.03□□□□□ -0.8
CCDC88C-201ENST00000331194 A0A0B4J2C4 111 aa10.03□□□□□ -0.8
CCDC88C-201ENST00000331194 VCYO14598 125 aa10.03□□□□□ -0.8
CCDC88C-201ENST00000331194 RNASE13Q5GAN3 156 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-201ENST00000331194 FAM19A5Q7Z5A7 132 aaPredicted RBP10.03□□□□□ -0.8
CCDC88C-201ENST00000331194 MRPL53Q96EL3 112 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-201ENST00000331194 DNAJC30Q96LL9 226 aa10.03□□□□□ -0.8
CCDC88C-201ENST00000331194 CCL21O00585 134 aa10.02□□□□□ -0.8
CCDC88C-201ENST00000331194 ZFP36P26651 326 aaKnown RBP10.02□□□□□ -0.8
CCDC88C-201ENST00000331194 TMEM141Q96I45 108 aa10.02□□□□□ -0.8
CCDC88C-201ENST00000331194 LINC00477Q96M19 166 aa10.02□□□□□ -0.8
CCDC88C-201ENST00000331194 U3KQE9 123 aa10.02□□□□□ -0.8
CCDC88C-201ENST00000331194 A0A0J9YXY3 114 aa10.02□□□□□ -0.81
CCDC88C-201ENST00000331194 LEPROTO15243 131 aa10.02□□□□□ -0.81
CCDC88C-201ENST00000331194 RPL13AP40429 203 aaKnown RBP10.02□□□□□ -0.81
CCDC88C-201ENST00000331194 TMEM219Q86XT9 240 aa10.02□□□□□ -0.81
CCDC88C-201ENST00000331194 EEF1AKMT3Q96AZ1 226 aa10.02□□□□□ -0.81
CCDC88C-201ENST00000331194 TIMM17AQ99595 171 aa10.02□□□□□ -0.81
CCDC88C-201ENST00000331194 TRAV25A0A0B4J276 109 aa10.01□□□□□ -0.81
CCDC88C-201ENST00000331194 C9orf153Q5TBE3 101 aa10.01□□□□□ -0.81
CCDC88C-201ENST00000331194 EDA2RQ9HAV5 297 aa10.01□□□□□ -0.81
CCDC88C-201ENST00000331194 ZANQ9Y493 2812 aa10.01□□□□□ -0.81
CCDC88C-201ENST00000331194 CEMP1Q6PRD7 247 aaPredicted RBP10.01□□□□□ -0.81
CCDC88C-201ENST00000331194 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.01□□□□□ -0.81
CCDC88C-201ENST00000331194 IGHV4OR15-8A0A075B7B6 117 aa10□□□□□ -0.81
CCDC88C-201ENST00000331194 A0A087WW49 117 aa10□□□□□ -0.81
CCDC88C-201ENST00000331194 EDN2P20800 178 aa10□□□□□ -0.81
CCDC88C-201ENST00000331194 M0R2P5 195 aa10□□□□□ -0.81
CCDC88C-201ENST00000331194 EBI3Q14213 229 aa10□□□□□ -0.81
CCDC88C-201ENST00000331194 C9orf139Q6ZV77 190 aa10□□□□□ -0.81
CCDC88C-201ENST00000331194 DAND5Q8N907 189 aa10□□□□□ -0.81
CCDC88C-201ENST00000331194 TRAV12-3A0A0B4J271 114 aa10□□□□□ -0.81
CCDC88C-201ENST00000331194 ICOSQ9Y6W8 199 aa10□□□□□ -0.81
CCDC88C-201ENST00000331194 CREBBPQ92793 2442 aa9.99□□□□□ -0.81
CCDC88C-201ENST00000331194 FAM236AA0A1B0GUQ0 79 aa9.99□□□□□ -0.81
CCDC88C-201ENST00000331194 FAM236BA0A1B0GV22 79 aa9.99□□□□□ -0.81
CCDC88C-201ENST00000331194 NPFFO15130 113 aa9.99□□□□□ -0.81
CCDC88C-201ENST00000331194 PPP1R17O96001 155 aa9.99□□□□□ -0.81
CCDC88C-201ENST00000331194 IGHV3-11P01762 117 aa9.99□□□□□ -0.81
CCDC88C-201ENST00000331194 SPANXA1Q9NS26 97 aa9.99□□□□□ -0.81
CCDC88C-201ENST00000331194 CHD6Q8TD26 2715 aa9.99□□□□□ -0.81
CCDC88C-201ENST00000331194 TRBV30A0A0K0K1B3 111 aa9.99□□□□□ -0.81
CCDC88C-201ENST00000331194 IGKV3-20P01619 116 aa9.99□□□□□ -0.81
CCDC88C-201ENST00000331194 PTPN13Q12923 2485 aa9.99□□□□□ -0.81
CCDC88C-201ENST00000331194 M0R1W7 72 aa9.98□□□□□ -0.81
CCDC88C-201ENST00000331194 IGHV3-30-3P0DP02 117 aa9.98□□□□□ -0.81
CCDC88C-201ENST00000331194 LENEPQ9Y5L5 61 aa9.98□□□□□ -0.81
CCDC88C-201ENST00000331194 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.98□□□□□ -0.81
CCDC88C-201ENST00000331194 HERVK_113P63121 156 aa9.98□□□□□ -0.81
CCDC88C-201ENST00000331194 LITAFQ99732 161 aa9.98□□□□□ -0.81
CCDC88C-201ENST00000331194 TLN2Q9Y4G6 2542 aa9.98□□□□□ -0.81
CCDC88C-201ENST00000331194 SOCS3O14543 225 aa9.98□□□□□ -0.81
CCDC88C-201ENST00000331194 POM121L12Q8N7R1 296 aa9.98□□□□□ -0.81
CCDC88C-201ENST00000331194 NACAE9PAV3 2078 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms