RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 SCGB2A2Q13296 93 aa11.91□□□□□ -0.5
USHBP1-202ENST00000324554 SPANXB1Q9NS25 103 aaPredicted RBP11.91□□□□□ -0.5
USHBP1-202ENST00000324554 VPREB3Q9UKI3 123 aa11.91□□□□□ -0.5
USHBP1-202ENST00000324554 AKAP9Q99996 3911 aa11.91□□□□□ -0.5
USHBP1-202ENST00000324554 F5H697 171 aa11.91□□□□□ -0.5
USHBP1-202ENST00000324554 MDFICQ9P1T7 246 aa11.91□□□□□ -0.5
USHBP1-202ENST00000324554 HIST2H2BDQ6DRA6 164 aa11.9□□□□□ -0.5
USHBP1-202ENST00000324554 SCGB1D4Q6XE38 83 aa11.9□□□□□ -0.5
USHBP1-202ENST00000324554 MYO9AB2RTY4 2548 aa11.9□□□□□ -0.5
USHBP1-202ENST00000324554 LGALS9O00182 355 aa11.9□□□□□ -0.5
USHBP1-202ENST00000324554 SH2D6Q7Z4S9 175 aa11.9□□□□□ -0.5
USHBP1-202ENST00000324554 Q8N1Y9 231 aa11.9□□□□□ -0.5
USHBP1-202ENST00000324554 SDHAF1A6NFY7 115 aa11.89□□□□□ -0.51
USHBP1-202ENST00000324554 SPINK13Q1W4C9 94 aa11.89□□□□□ -0.51
USHBP1-202ENST00000324554 FAM74A4Q5TZK3 123 aa11.89□□□□□ -0.51
USHBP1-202ENST00000324554 VCYO14598 125 aa11.89□□□□□ -0.51
USHBP1-202ENST00000324554 HOXD3P31249 432 aaPredicted RBP11.89□□□□□ -0.51
USHBP1-202ENST00000324554 KIR2DL4Q99706 377 aa11.89□□□□□ -0.51
USHBP1-202ENST00000324554 ZNF702PQ9H963 129 aa11.89□□□□□ -0.51
USHBP1-202ENST00000324554 PRO0461Q9UI25 63 aa11.89□□□□□ -0.51
USHBP1-202ENST00000324554 MTORP42345 2549 aa11.88□□□□□ -0.51
USHBP1-202ENST00000324554 ELANEP08246 267 aa11.88□□□□□ -0.51
USHBP1-202ENST00000324554 PMVKQ15126 192 aa11.88□□□□□ -0.51
USHBP1-202ENST00000324554 ETDBQ3ZM63 59 aa11.88□□□□□ -0.51
USHBP1-202ENST00000324554 PGPEP1Q9NXJ5 209 aa11.88□□□□□ -0.51
USHBP1-202ENST00000324554 IGHV1OR15-1A0A075B7D0 117 aa11.88□□□□□ -0.51
USHBP1-202ENST00000324554 TRBV6-5A0A0K0K1A5 114 aa11.87□□□□□ -0.51
USHBP1-202ENST00000324554 TRBV27A0A0K0K1C4 114 aa11.87□□□□□ -0.51
USHBP1-202ENST00000324554 SRSF9Q13242 221 aaKnown RBP eCLIP11.87□□□□□ -0.51
USHBP1-202ENST00000324554 UBE2E2Q96LR5 201 aa11.87□□□□□ -0.51
USHBP1-202ENST00000324554 LINC01549A6NIU2 74 aa11.87□□□□□ -0.51
USHBP1-202ENST00000324554 TSPEAR-AS2P59090 65 aa11.87□□□□□ -0.51
USHBP1-202ENST00000324554 GAGE13Q4V321 117 aa11.87□□□□□ -0.51
USHBP1-202ENST00000324554 SYT8Q8NBV8 401 aa11.87□□□□□ -0.51
USHBP1-202ENST00000324554 ZNRF2Q8NHG8 242 aa11.87□□□□□ -0.51
USHBP1-202ENST00000324554 UBE2D1P51668 147 aa11.86□□□□□ -0.51
USHBP1-202ENST00000324554 TIMM17AQ99595 171 aa11.86□□□□□ -0.51
USHBP1-202ENST00000324554 SMR3AQ99954 134 aa11.86□□□□□ -0.51
USHBP1-202ENST00000324554 MRPL16Q9NX20 251 aaKnown RBP11.86□□□□□ -0.51
USHBP1-202ENST00000324554 ZNF256Q9Y2P7 627 aaPredicted RBP11.86□□□□□ -0.51
USHBP1-202ENST00000324554 M0QY20 66 aa11.86□□□□□ -0.51
USHBP1-202ENST00000324554 TMEM141Q96I45 108 aa11.86□□□□□ -0.51
USHBP1-202ENST00000324554 SORL1Q92673 2214 aa11.85□□□□□ -0.51
USHBP1-202ENST00000324554 A0A0J9YY99 117 aa11.85□□□□□ -0.51
USHBP1-202ENST00000324554 TMEM238C9JI98 176 aa11.85□□□□□ -0.51
USHBP1-202ENST00000324554 ZNF56Q15929 161 aa11.85□□□□□ -0.51
USHBP1-202ENST00000324554 PAPPA-AS1Q5QFB9 102 aa11.85□□□□□ -0.51
USHBP1-202ENST00000324554 SFTA2Q6UW10 78 aa11.85□□□□□ -0.51
USHBP1-202ENST00000324554 RNF152Q8N8N0 203 aa11.85□□□□□ -0.51
USHBP1-202ENST00000324554 OPRPNQ99935 248 aaPredicted RBP11.85□□□□□ -0.51
USHBP1-202ENST00000324554 YAE1D1Q9NRH1 226 aa11.85□□□□□ -0.51
USHBP1-202ENST00000324554 HERVK_113P61574 105 aa11.84□□□□□ -0.51
USHBP1-202ENST00000324554 ZNF876PQ49A33 203 aa11.84□□□□□ -0.51
USHBP1-202ENST00000324554 TMEM170BQ5T4T1 132 aa11.84□□□□□ -0.51
USHBP1-202ENST00000324554 SPAG8Q99932 426 aaPredicted RBP11.84□□□□□ -0.51
USHBP1-202ENST00000324554 TMEM238LA0A1B0GVL6 79 aa11.84□□□□□ -0.51
USHBP1-202ENST00000324554 A6NJY4 79 aa11.84□□□□□ -0.51
USHBP1-202ENST00000324554 INSL3P51460 131 aa11.84□□□□□ -0.51
USHBP1-202ENST00000324554 KRTAP1-1Q07627 177 aa11.84□□□□□ -0.51
USHBP1-202ENST00000324554 TSSC4Q9Y5U2 329 aaPredicted RBP11.84□□□□□ -0.51
USHBP1-202ENST00000324554 SETD2Q9BYW2 2564 aaPredicted RBP11.83□□□□□ -0.52
USHBP1-202ENST00000324554 TSPAN13O95857 204 aa11.83□□□□□ -0.52
USHBP1-202ENST00000324554 TCTEX1D4Q5JR98 221 aa11.83□□□□□ -0.52
USHBP1-202ENST00000324554 APOMO95445 188 aa11.82□□□□□ -0.52
USHBP1-202ENST00000324554 C18orf65Q6ZTR6 163 aa11.82□□□□□ -0.52
USHBP1-202ENST00000324554 AMELXQ99217 191 aa11.82□□□□□ -0.52
USHBP1-202ENST00000324554 GTSF1LQ9H1H1 148 aa11.82□□□□□ -0.52
USHBP1-202ENST00000324554 RBMY1A1P0DJD3 496 aaKnown RBP11.81□□□□□ -0.52
USHBP1-202ENST00000324554 RBMY1CP0DJD4 496 aa11.81□□□□□ -0.52
USHBP1-202ENST00000324554 SLURP1P55000 103 aa11.81□□□□□ -0.52
USHBP1-202ENST00000324554 RBMY1FQ15415 496 aaKnown RBP11.81□□□□□ -0.52
USHBP1-202ENST00000324554 DEFB136Q30KP8 78 aa11.81□□□□□ -0.52
USHBP1-202ENST00000324554 TRPT1Q86TN4 253 aaKnown RBP11.81□□□□□ -0.52
USHBP1-202ENST00000324554 P0DMU3 169 aa11.81□□□□□ -0.52
USHBP1-202ENST00000324554 FAM231AP0DMU4 169 aa11.81□□□□□ -0.52
USHBP1-202ENST00000324554 FAM231CP0DMU5 169 aa11.81□□□□□ -0.52
USHBP1-202ENST00000324554 TRGV11A0A075B6L2 103 aa11.8□□□□□ -0.52
USHBP1-202ENST00000324554 SMCPP49901 116 aaPredicted RBP11.8□□□□□ -0.52
USHBP1-202ENST00000324554 NSUN5P1Q3KNT7 163 aa11.8□□□□□ -0.52
USHBP1-202ENST00000324554 NDUFA11Q86Y39 141 aa11.8□□□□□ -0.52
USHBP1-202ENST00000324554 LOC107984156A0A0G2JMH3 177 aa11.8□□□□□ -0.52
USHBP1-202ENST00000324554 GAGE12HA6NDE8 117 aa11.8□□□□□ -0.52
USHBP1-202ENST00000324554 KNCNA6PVL3 124 aa11.8□□□□□ -0.52
USHBP1-202ENST00000324554 IGHV3-30P01768 117 aa11.8□□□□□ -0.52
USHBP1-202ENST00000324554 IGHV3-30-5P0DP03 117 aa11.8□□□□□ -0.52
USHBP1-202ENST00000324554 AZU1P20160 251 aa11.8□□□□□ -0.52
USHBP1-202ENST00000324554 ARL17AQ8IVW1 177 aa11.8□□□□□ -0.52
USHBP1-202ENST00000324554 RHOHQ15669 191 aa11.79□□□□□ -0.52
USHBP1-202ENST00000324554 SLC25A29Q8N8R3 303 aa11.79□□□□□ -0.52
USHBP1-202ENST00000324554 ESM1Q9NQ30 184 aa11.79□□□□□ -0.52
USHBP1-202ENST00000324554 OTOGQ6ZRI0 2925 aa11.79□□□□□ -0.52
USHBP1-202ENST00000324554 J3QQQ9 107 aa11.79□□□□□ -0.52
USHBP1-202ENST00000324554 UBE2D3P61077 147 aa11.79□□□□□ -0.52
USHBP1-202ENST00000324554 UBE2D2P62837 147 aa11.79□□□□□ -0.52
USHBP1-202ENST00000324554 CFAP126Q5VTH2 177 aa11.79□□□□□ -0.52
USHBP1-202ENST00000324554 DLX4Q92988 240 aaPredicted RBP11.79□□□□□ -0.52
USHBP1-202ENST00000324554 J3QR89 54 aa11.78□□□□□ -0.52
USHBP1-202ENST00000324554 DEFB131AP59861 70 aa11.78□□□□□ -0.52
USHBP1-202ENST00000324554 DNAJC9-AS1A6NH13 148 aa11.78□□□□□ -0.52
USHBP1-202ENST00000324554 CFC1BP0CG36 223 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms