RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 KRTAP10-11P60412 298 aa11.85□□□□□ -0.51
USP4-201ENST00000265560 VAMP8Q9BV40 100 aa11.85□□□□□ -0.51
USP4-201ENST00000265560 C1QTNF4Q9BXJ3 329 aa11.85□□□□□ -0.51
USP4-201ENST00000265560 TEX43Q6ZNM6 134 aa11.84□□□□□ -0.51
USP4-201ENST00000265560 IFI27L1Q96BM0 104 aa11.84□□□□□ -0.51
USP4-201ENST00000265560 TP73-AS1Q9UF72 201 aa11.84□□□□□ -0.51
USP4-201ENST00000265560 IGHV3-38A0A0C4DH36 116 aa11.84□□□□□ -0.51
USP4-201ENST00000265560 hDV102S1A0JD36 115 aa11.84□□□□□ -0.51
USP4-201ENST00000265560 RPL39P62891 51 aaKnown RBP11.84□□□□□ -0.51
USP4-201ENST00000265560 ZNF705AQ6ZN79 300 aaPredicted RBP11.84□□□□□ -0.51
USP4-201ENST00000265560 OR4C5Q8NGB2 326 aa11.84□□□□□ -0.51
USP4-201ENST00000265560 C20orf78Q9BR46 151 aa11.84□□□□□ -0.51
USP4-201ENST00000265560 A8MWV9 139 aa11.83□□□□□ -0.52
USP4-201ENST00000265560 PRB2P02812 416 aaPredicted RBP11.83□□□□□ -0.52
USP4-201ENST00000265560 SPXQ9BT56 116 aa11.83□□□□□ -0.52
USP4-201ENST00000265560 PRSS1P07477 247 aa11.83□□□□□ -0.52
USP4-201ENST00000265560 DEFB130BP0DP73 79 aa11.83□□□□□ -0.52
USP4-201ENST00000265560 DEFB130AP0DP74 79 aa11.83□□□□□ -0.52
USP4-201ENST00000265560 POLR2KP53803 58 aaKnown RBP11.83□□□□□ -0.52
USP4-201ENST00000265560 LINC00467Q9BRT7 94 aa11.83□□□□□ -0.52
USP4-201ENST00000265560 PHLDA1Q8WV24 401 aaPredicted RBP11.82□□□□□ -0.52
USP4-201ENST00000265560 DKK2Q9UBU2 259 aa11.82□□□□□ -0.52
USP4-201ENST00000265560 TRGV2A0A075B6R0 118 aa11.82□□□□□ -0.52
USP4-201ENST00000265560 IGHV4-30-4P0DP06 118 aa11.82□□□□□ -0.52
USP4-201ENST00000265560 UFSP1Q6NVU6 142 aa11.82□□□□□ -0.52
USP4-201ENST00000265560 ZC2HC1BQ5TFG8 222 aa11.82□□□□□ -0.52
USP4-201ENST00000265560 SHISA2Q6UWI4 295 aa11.82□□□□□ -0.52
USP4-201ENST00000265560 PRSS47A8MTI9 375 aa11.81□□□□□ -0.52
USP4-201ENST00000265560 G3V4G9 280 aa11.81□□□□□ -0.52
USP4-201ENST00000265560 SPATA45Q537H7 98 aa11.81□□□□□ -0.52
USP4-201ENST00000265560 TSTD3H0UI37 97 aa11.8□□□□□ -0.52
USP4-201ENST00000265560 PKIAP61925 76 aa11.8□□□□□ -0.52
USP4-201ENST00000265560 C14orf144Q96I85 54 aa11.8□□□□□ -0.52
USP4-201ENST00000265560 LINC01546A6NGU7 62 aa11.8□□□□□ -0.52
USP4-201ENST00000265560 C2orf66Q6UXQ4 117 aa11.8□□□□□ -0.52
USP4-201ENST00000265560 IL17DQ8TAD2 202 aa11.8□□□□□ -0.52
USP4-201ENST00000265560 ZMAT5Q9UDW3 170 aaKnown RBP11.8□□□□□ -0.52
USP4-201ENST00000265560 VCYO14598 125 aa11.8□□□□□ -0.52
USP4-201ENST00000265560 ZFP2Q6ZN57 461 aa11.8□□□□□ -0.52
USP4-201ENST00000265560 C16orf74Q96GX8 76 aa11.8□□□□□ -0.52
USP4-201ENST00000265560 KIR2DL4Q99706 377 aa11.79□□□□□ -0.52
USP4-201ENST00000265560 RS1O15537 224 aa11.79□□□□□ -0.52
USP4-201ENST00000265560 X6R8D5 127 aa11.79□□□□□ -0.52
USP4-201ENST00000265560 SCGB3A1Q96QR1 104 aa11.78□□□□□ -0.52
USP4-201ENST00000265560 OPRPNQ99935 248 aaPredicted RBP11.78□□□□□ -0.52
USP4-201ENST00000265560 TNFRSF18Q9Y5U5 241 aa11.78□□□□□ -0.52
USP4-201ENST00000265560 PPP1R17O96001 155 aa11.78□□□□□ -0.52
USP4-201ENST00000265560 PET117Q6UWS5 81 aa11.78□□□□□ -0.52
USP4-201ENST00000265560 STPG4Q8N801 248 aa11.78□□□□□ -0.52
USP4-201ENST00000265560 TP53TG1Q9Y2A0 90 aa11.78□□□□□ -0.52
USP4-201ENST00000265560 ORMDL2Q53FV1 153 aa11.77□□□□□ -0.52
USP4-201ENST00000265560 NEXN-AS1Q8NBZ9 246 aa11.77□□□□□ -0.52
USP4-201ENST00000265560 LOC100131303A0A0U1RQF7 123 aa11.77□□□□□ -0.53
USP4-201ENST00000265560 OR11H2Q8NH07 326 aa11.77□□□□□ -0.53
USP4-201ENST00000265560 DDTP30046 118 aa11.77□□□□□ -0.53
USP4-201ENST00000265560 LINC01545Q5VT33 79 aa11.77□□□□□ -0.53
USP4-201ENST00000265560 ZNRF2Q8NHG8 242 aa11.77□□□□□ -0.53
USP4-201ENST00000265560 MDFIQ99750 246 aa11.77□□□□□ -0.53
USP4-201ENST00000265560 TRBV27A0A0K0K1C4 114 aa11.76□□□□□ -0.53
USP4-201ENST00000265560 C20orf202A1L168 122 aa11.76□□□□□ -0.53
USP4-201ENST00000265560 SLC25A29Q8N8R3 303 aa11.76□□□□□ -0.53
USP4-201ENST00000265560 DAZ2Q13117 558 aaKnown RBP11.76□□□□□ -0.53
USP4-201ENST00000265560 TSHBP01222 138 aa11.75□□□□□ -0.53
USP4-201ENST00000265560 CEMP1Q6PRD7 247 aaPredicted RBP11.75□□□□□ -0.53
USP4-201ENST00000265560 TRAV9-2A0A087WT02 112 aa11.75□□□□□ -0.53
USP4-201ENST00000265560 TRBV6-5A0A0K0K1A5 114 aa11.75□□□□□ -0.53
USP4-201ENST00000265560 H7C1H1 209 aa11.75□□□□□ -0.53
USP4-201ENST00000265560 RETNQ9HD89 108 aa11.75□□□□□ -0.53
USP4-201ENST00000265560 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.74□□□□□ -0.53
USP4-201ENST00000265560 TOMM6Q96B49 74 aa11.74□□□□□ -0.53
USP4-201ENST00000265560 GAGE12JA6NER3 117 aa11.74□□□□□ -0.53
USP4-201ENST00000265560 I3L3M4 83 aa11.74□□□□□ -0.53
USP4-201ENST00000265560 GAGE1Q13065 139 aa11.74□□□□□ -0.53
USP4-201ENST00000265560 GAGE4Q13068 117 aa11.74□□□□□ -0.53
USP4-201ENST00000265560 GAGE5Q13069 117 aa11.74□□□□□ -0.53
USP4-201ENST00000265560 GAGE13Q4V321 117 aa11.74□□□□□ -0.53
USP4-201ENST00000265560 KIR2DL5BA0A0G2JN68 375 aa11.73□□□□□ -0.53
USP4-201ENST00000265560 KIR2DL5BA0A0G2JPC4 375 aa11.73□□□□□ -0.53
USP4-201ENST00000265560 Q6ZN92 141 aa11.73□□□□□ -0.53
USP4-201ENST00000265560 KIR2DL5AQ8N109 375 aa11.73□□□□□ -0.53
USP4-201ENST00000265560 MRPL35Q9NZE8 188 aaKnown RBP11.73□□□□□ -0.53
USP4-201ENST00000265560 RHODO00212 210 aa11.73□□□□□ -0.53
USP4-201ENST00000265560 WIPF1O43516 503 aa11.73□□□□□ -0.53
USP4-201ENST00000265560 APOC4P55056 127 aa11.73□□□□□ -0.53
USP4-201ENST00000265560 ODF1Q14990 250 aa11.73□□□□□ -0.53
USP4-201ENST00000265560 LGALS9BQ3B8N2 356 aa11.73□□□□□ -0.53
USP4-201ENST00000265560 RNASE13Q5GAN3 156 aaKnown RBP11.73□□□□□ -0.53
USP4-201ENST00000265560 FAM222AQ5U5X8 452 aa11.73□□□□□ -0.53
USP4-201ENST00000265560 CYSLTR1Q9Y271 337 aa11.73□□□□□ -0.53
USP4-201ENST00000265560 TRGV4A0A0C4DH28 118 aa11.72□□□□□ -0.53
USP4-201ENST00000265560 TRAV4A0A0B4J268 109 aa11.72□□□□□ -0.53
USP4-201ENST00000265560 PIK3CD-AS1Q5SR53 167 aa11.72□□□□□ -0.53
USP4-201ENST00000265560 PTH2Q96A98 100 aa11.72□□□□□ -0.53
USP4-201ENST00000265560 IGHV4-28A0A0C4DH34 117 aa11.71□□□□□ -0.53
USP4-201ENST00000265560 OVOL2Q9BRP0 275 aa11.71□□□□□ -0.53
USP4-201ENST00000265560 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.71□□□□□ -0.53
USP4-201ENST00000265560 IGKV2-29A2NJV5 120 aaPredicted RBP11.71□□□□□ -0.53
USP4-201ENST00000265560 ATP5LO75964 103 aa11.71□□□□□ -0.53
USP4-201ENST00000265560 ANKRD39Q53RE8 183 aa11.71□□□□□ -0.54
USP4-201ENST00000265560 LGALS9CQ6DKI2 356 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms