RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 TRGV11A0A075B6L2 103 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 J3QR89 54 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 IGHV3-30P01768 117 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 IGHV3-30-5P0DP03 117 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 NDUFA11Q86Y39 141 aa11.22□□□□□ -0.61
DDX56-201ENST00000258772 SPAG8Q99932 426 aaPredicted RBP11.22□□□□□ -0.61
DDX56-201ENST00000258772 PIEZO1Q92508 2521 aa11.22□□□□□ -0.61
DDX56-201ENST00000258772 ZNF702PQ9H963 129 aa11.21□□□□□ -0.61
DDX56-201ENST00000258772 CSMD2Q7Z408 3487 aa11.21□□□□□ -0.62
DDX56-201ENST00000258772 TCTEX1D4Q5JR98 221 aa11.21□□□□□ -0.62
DDX56-201ENST00000258772 DLX4Q92988 240 aaPredicted RBP11.21□□□□□ -0.62
DDX56-201ENST00000258772 ANKRD17O75179 2603 aaKnown RBP11.21□□□□□ -0.62
DDX56-201ENST00000258772 LOC107984156A0A0G2JMH3 177 aa11.2□□□□□ -0.62
DDX56-201ENST00000258772 TMEM223A0PJW6 202 aa11.2□□□□□ -0.62
DDX56-201ENST00000258772 RBMY1A1P0DJD3 496 aaKnown RBP11.2□□□□□ -0.62
DDX56-201ENST00000258772 RBMY1CP0DJD4 496 aa11.2□□□□□ -0.62
DDX56-201ENST00000258772 LGALS3P17931 250 aaKnown RBP11.2□□□□□ -0.62
DDX56-201ENST00000258772 UBE2D3P61077 147 aa11.2□□□□□ -0.62
DDX56-201ENST00000258772 UBE2D2P62837 147 aa11.2□□□□□ -0.62
DDX56-201ENST00000258772 RBMY1FQ15415 496 aaKnown RBP11.2□□□□□ -0.62
DDX56-201ENST00000258772 Q6YL49 198 aa11.2□□□□□ -0.62
DDX56-201ENST00000258772 ARL17AQ8IVW1 177 aa11.2□□□□□ -0.62
DDX56-201ENST00000258772 CFC1BP0CG36 223 aa11.2□□□□□ -0.62
DDX56-201ENST00000258772 CFC1P0CG37 223 aa11.2□□□□□ -0.62
DDX56-201ENST00000258772 SFTA2Q6UW10 78 aa11.2□□□□□ -0.62
DDX56-201ENST00000258772 TSSC4Q9Y5U2 329 aaPredicted RBP11.2□□□□□ -0.62
DDX56-201ENST00000258772 IGSF10Q6WRI0 2623 aa11.2□□□□□ -0.62
DDX56-201ENST00000258772 A4D1N5 150 aa11.19□□□□□ -0.62
DDX56-201ENST00000258772 TMEM238C9JI98 176 aa11.19□□□□□ -0.62
DDX56-201ENST00000258772 CFAP126Q5VTH2 177 aa11.19□□□□□ -0.62
DDX56-201ENST00000258772 KNCNA6PVL3 124 aa11.19□□□□□ -0.62
DDX56-201ENST00000258772 LEPROTO15243 131 aa11.19□□□□□ -0.62
DDX56-201ENST00000258772 UTP20O75691 2785 aaKnown RBP11.19□□□□□ -0.62
DDX56-201ENST00000258772 HTN1P15515 57 aa11.19□□□□□ -0.62
DDX56-201ENST00000258772 ZANQ9Y493 2812 aa11.18□□□□□ -0.62
DDX56-201ENST00000258772 IGLV4-3A0A075B6K6 122 aa11.18□□□□□ -0.62
DDX56-201ENST00000258772 GAGE12HA6NDE8 117 aa11.18□□□□□ -0.62
DDX56-201ENST00000258772 ZNF22P17026 224 aaPredicted RBP11.18□□□□□ -0.62
DDX56-201ENST00000258772 PSMB2P49721 201 aa11.18□□□□□ -0.62
DDX56-201ENST00000258772 VCX2Q9H322 139 aa11.18□□□□□ -0.62
DDX56-201ENST00000258772 RHODO00212 210 aa11.18□□□□□ -0.62
DDX56-201ENST00000258772 FSHBP01225 129 aa11.18□□□□□ -0.62
DDX56-201ENST00000258772 SMCPP49901 116 aaPredicted RBP11.18□□□□□ -0.62
DDX56-201ENST00000258772 SIGMAR1Q99720 223 aa11.18□□□□□ -0.62
DDX56-201ENST00000258772 EDA2RQ9HAV5 297 aa11.18□□□□□ -0.62
DDX56-201ENST00000258772 BEX4Q9NWD9 120 aaPredicted RBP11.18□□□□□ -0.62
DDX56-201ENST00000258772 IGHV3-73A0A0B4J1V6 119 aa11.17□□□□□ -0.62
DDX56-201ENST00000258772 A0A0J9YXV3 536 aa11.17□□□□□ -0.62
DDX56-201ENST00000258772 INSL3P51460 131 aa11.17□□□□□ -0.62
DDX56-201ENST00000258772 SLURP1P55000 103 aa11.17□□□□□ -0.62
DDX56-201ENST00000258772 DEFB131AP59861 70 aa11.17□□□□□ -0.62
DDX56-201ENST00000258772 ACACBO00763 2458 aa11.17□□□□□ -0.62
DDX56-201ENST00000258772 MYO18BQ8IUG5 2567 aa11.17□□□□□ -0.62
DDX56-201ENST00000258772 C18orf65Q6ZTR6 163 aa11.17□□□□□ -0.62
DDX56-201ENST00000258772 C10orf126Q8N4M7 172 aa11.17□□□□□ -0.62
DDX56-201ENST00000258772 NACAE9PAV3 2078 aa11.16□□□□□ -0.62
DDX56-201ENST00000258772 CACNA1AO00555 2505 aa11.16□□□□□ -0.62
DDX56-201ENST00000258772 PROK1P58294 105 aa11.16□□□□□ -0.62
DDX56-201ENST00000258772 DEFB136Q30KP8 78 aa11.16□□□□□ -0.62
DDX56-201ENST00000258772 LYRM7Q5U5X0 104 aa11.16□□□□□ -0.62
DDX56-201ENST00000258772 GTSF1LQ9H1H1 148 aa11.16□□□□□ -0.62
DDX56-201ENST00000258772 POLQO75417 2590 aa11.16□□□□□ -0.62
DDX56-201ENST00000258772 A8MTW9 85 aa11.15□□□□□ -0.62
DDX56-201ENST00000258772 H3BMM0 161 aa11.15□□□□□ -0.62
DDX56-201ENST00000258772 AZU1P20160 251 aa11.15□□□□□ -0.62
DDX56-201ENST00000258772 SPATA25Q9BR10 227 aa11.15□□□□□ -0.62
DDX56-201ENST00000258772 PYGO1Q9Y3Y4 419 aa11.15□□□□□ -0.62
DDX56-201ENST00000258772 IGHV3-64A0A075B6Q5 118 aa11.15□□□□□ -0.62
DDX56-201ENST00000258772 PRM2P04554 102 aa11.15□□□□□ -0.62
DDX56-201ENST00000258772 PRO1854Q9UHT4 67 aa11.15□□□□□ -0.62
DDX56-201ENST00000258772 FAM104AQ969W3 186 aa11.14□□□□□ -0.63
DDX56-201ENST00000258772 CR1P17927 2039 aa11.14□□□□□ -0.63
DDX56-201ENST00000258772 RBMY1BA6NDE4 496 aaKnown RBP11.14□□□□□ -0.63
DDX56-201ENST00000258772 RBMY1EA6NEQ0 496 aaKnown RBP11.14□□□□□ -0.63
DDX56-201ENST00000258772 TCL1BO95988 128 aa11.14□□□□□ -0.63
DDX56-201ENST00000258772 RBMY1DP0C7P1 496 aaKnown RBP11.14□□□□□ -0.63
DDX56-201ENST00000258772 IGHV4-31P0DP07 118 aa11.14□□□□□ -0.63
DDX56-201ENST00000258772 FOXI1Q12951 378 aa11.14□□□□□ -0.63
DDX56-201ENST00000258772 Q5PR19 223 aa11.14□□□□□ -0.63
DDX56-201ENST00000258772 ATP6V0E2Q8NHE4 81 aa11.14□□□□□ -0.63
DDX56-201ENST00000258772 TRBV20-1A0A075B6N2 111 aa11.13□□□□□ -0.63
DDX56-201ENST00000258772 DUX3Q96PT4 197 aa11.13□□□□□ -0.63
DDX56-201ENST00000258772 C1QTNF4Q9BXJ3 329 aa11.13□□□□□ -0.63
DDX56-201ENST00000258772 TNFRSF18Q9Y5U5 241 aa11.13□□□□□ -0.63
DDX56-201ENST00000258772 MXRA5Q9NR99 2828 aa11.13□□□□□ -0.63
DDX56-201ENST00000258772 A8MWV9 139 aa11.13□□□□□ -0.63
DDX56-201ENST00000258772 M0R2P5 195 aa11.13□□□□□ -0.63
DDX56-201ENST00000258772 ZNF418Q8TF45 676 aaPredicted RBP11.13□□□□□ -0.63
DDX56-201ENST00000258772 FAM208BQ5VWN6 2430 aa11.13□□□□□ -0.63
DDX56-201ENST00000258772 PRRC2AP48634 2157 aaKnown RBP11.12□□□□□ -0.63
DDX56-201ENST00000258772 CD28P10747 220 aa11.12□□□□□ -0.63
DDX56-201ENST00000258772 TRAV2A0A0B4J234 112 aa11.12□□□□□ -0.63
DDX56-201ENST00000258772 CRYBA4P53673 196 aa11.12□□□□□ -0.63
DDX56-201ENST00000258772 MRPS36P82909 103 aaKnown RBP11.12□□□□□ -0.63
DDX56-201ENST00000258772 SMAGPQ0VAQ4 97 aa11.12□□□□□ -0.63
DDX56-201ENST00000258772 TMEM61Q8N0U2 210 aa11.12□□□□□ -0.63
DDX56-201ENST00000258772 Q9UF83 564 aa11.12□□□□□ -0.63
DDX56-201ENST00000258772 EIF4EBP3O60516 100 aaPredicted RBP11.11□□□□□ -0.63
DDX56-201ENST00000258772 PIK3CD-AS1Q5SR53 167 aa11.11□□□□□ -0.63
DDX56-201ENST00000258772 CEMP1Q6PRD7 247 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms