RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CHD8Q9HCK8 2581 aa10.76□□□□□ -0.69
SDC1-201ENST00000254351 ATXN8Q156A1 80 aa10.75□□□□□ -0.69
SDC1-201ENST00000254351 H3BMM0 161 aa10.75□□□□□ -0.69
SDC1-201ENST00000254351 SAA4P35542 130 aa10.75□□□□□ -0.69
SDC1-201ENST00000254351 UBE2E1P51965 193 aa10.75□□□□□ -0.69
SDC1-201ENST00000254351 SBSPONQ8IVN8 264 aa10.75□□□□□ -0.69
SDC1-201ENST00000254351 UBE2WQ96B02 151 aa10.75□□□□□ -0.69
SDC1-201ENST00000254351 KLK9Q9UKQ9 250 aa10.75□□□□□ -0.69
SDC1-201ENST00000254351 CDSNQ15517 529 aa10.75□□□□□ -0.69
SDC1-201ENST00000254351 LY6EQ16553 131 aa10.74□□□□□ -0.69
SDC1-201ENST00000254351 VCYO14598 125 aa10.74□□□□□ -0.69
SDC1-201ENST00000254351 ZNF22P17026 224 aaPredicted RBP10.74□□□□□ -0.69
SDC1-201ENST00000254351 MDFICQ9P1T7 246 aa10.74□□□□□ -0.69
SDC1-201ENST00000254351 P0DMU3 169 aa10.73□□□□□ -0.69
SDC1-201ENST00000254351 FAM231AP0DMU4 169 aa10.73□□□□□ -0.69
SDC1-201ENST00000254351 FAM231CP0DMU5 169 aa10.73□□□□□ -0.69
SDC1-201ENST00000254351 ZNF876PQ49A33 203 aa10.73□□□□□ -0.69
SDC1-201ENST00000254351 Q8N6K4 173 aa10.73□□□□□ -0.69
SDC1-201ENST00000254351 ZNF625Q96I27 306 aaPredicted RBP10.73□□□□□ -0.69
SDC1-201ENST00000254351 PRM2P04554 102 aa10.73□□□□□ -0.69
SDC1-201ENST00000254351 KLRB1Q12918 225 aa10.73□□□□□ -0.69
SDC1-201ENST00000254351 ADAMTSL4-AS1Q5T5F5 129 aa10.73□□□□□ -0.69
SDC1-201ENST00000254351 BRD3OSQ6XYD6 125 aa10.73□□□□□ -0.69
SDC1-201ENST00000254351 CCL21O00585 134 aa10.72□□□□□ -0.69
SDC1-201ENST00000254351 PAPPA-AS1Q5QFB9 102 aa10.72□□□□□ -0.69
SDC1-201ENST00000254351 LINC00315P59091 139 aa10.72□□□□□ -0.69
SDC1-201ENST00000254351 C9orf139Q6ZV77 190 aa10.72□□□□□ -0.69
SDC1-201ENST00000254351 POLR2KP53803 58 aaKnown RBP10.71□□□□□ -0.69
SDC1-201ENST00000254351 DUX5Q96PT3 197 aa10.71□□□□□ -0.69
SDC1-201ENST00000254351 RS1O15537 224 aa10.71□□□□□ -0.69
SDC1-201ENST00000254351 TMEM95Q3KNT9 176 aa10.71□□□□□ -0.69
SDC1-201ENST00000254351 A0A0J9YXY3 114 aa10.71□□□□□ -0.7
SDC1-201ENST00000254351 H7C423 109 aa10.71□□□□□ -0.7
SDC1-201ENST00000254351 CELSR2Q9HCU4 2923 aa10.7□□□□□ -0.7
SDC1-201ENST00000254351 CFAP161Q6P656 301 aa10.7□□□□□ -0.7
SDC1-201ENST00000254351 ITLN2Q8WWU7 325 aaPredicted RBP10.7□□□□□ -0.7
SDC1-201ENST00000254351 TMEM223A0PJW6 202 aa10.7□□□□□ -0.7
SDC1-201ENST00000254351 KNCNA6PVL3 124 aa10.7□□□□□ -0.7
SDC1-201ENST00000254351 PF4V1P10720 104 aa10.7□□□□□ -0.7
SDC1-201ENST00000254351 PROK1P58294 105 aa10.69□□□□□ -0.7
SDC1-201ENST00000254351 M0R1W7 72 aa10.69□□□□□ -0.7
SDC1-201ENST00000254351 IGHV3-30-3P0DP02 117 aa10.69□□□□□ -0.7
SDC1-201ENST00000254351 RHPN1-AS1Q9BWJ2 59 aa10.69□□□□□ -0.7
SDC1-201ENST00000254351 KIF25-AS1Q9Y6Z4 181 aa10.69□□□□□ -0.7
SDC1-201ENST00000254351 TRBV10-2A0A0K0K1G8 114 aa10.69□□□□□ -0.7
SDC1-201ENST00000254351 Q9UF83 564 aa10.69□□□□□ -0.7
SDC1-201ENST00000254351 ICOSQ9Y6W8 199 aa10.69□□□□□ -0.7
SDC1-201ENST00000254351 TRBV7-1A0A0A6YYK4 115 aa10.68□□□□□ -0.7
SDC1-201ENST00000254351 TRAV41A0A0B4J266 112 aa10.68□□□□□ -0.7
SDC1-201ENST00000254351 LGALS9O00182 355 aa10.68□□□□□ -0.7
SDC1-201ENST00000254351 LEPROTO15243 131 aa10.68□□□□□ -0.7
SDC1-201ENST00000254351 TMEM141Q96I45 108 aa10.68□□□□□ -0.7
SDC1-201ENST00000254351 CD28P10747 220 aa10.68□□□□□ -0.7
SDC1-201ENST00000254351 TIMM21Q9BVV7 248 aa10.68□□□□□ -0.7
SDC1-201ENST00000254351 CENPVL3A0A0U1RRI6 287 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 FAM236AA0A1B0GUQ0 79 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 FAM236BA0A1B0GV22 79 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 PPDPFQ9H3Y8 114 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 IGHV1-69DA0A0B4J2H0 117 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 OVOL1O14753 267 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 PPP1R17O96001 155 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 MRPL23Q16540 153 aaKnown RBP10.67□□□□□ -0.7
SDC1-201ENST00000254351 MINOS1Q5TGZ0 78 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 TIMM17AQ99595 171 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 TRGV11A0A075B6L2 103 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 M0R2P5 195 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 BRI3O95415 125 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 LY6DQ14210 128 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 SPINK13Q1W4C9 94 aa10.67□□□□□ -0.7
SDC1-201ENST00000254351 SETD2Q9BYW2 2564 aaPredicted RBP10.66□□□□□ -0.7
SDC1-201ENST00000254351 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.66□□□□□ -0.7
SDC1-201ENST00000254351 MRPL53Q96EL3 112 aaKnown RBP10.66□□□□□ -0.7
SDC1-201ENST00000254351 NDUFA12Q9UI09 145 aa10.66□□□□□ -0.7
SDC1-201ENST00000254351 KLK5Q9Y337 293 aaPredicted RBP10.66□□□□□ -0.7
SDC1-201ENST00000254351 CENPEQ02224 2701 aa10.65□□□□□ -0.7
SDC1-201ENST00000254351 IGHV3-38A0A0C4DH36 116 aa10.65□□□□□ -0.7
SDC1-201ENST00000254351 RPL13AP40429 203 aaKnown RBP10.65□□□□□ -0.7
SDC1-201ENST00000254351 A0A0B4J2C4 111 aa10.65□□□□□ -0.7
SDC1-201ENST00000254351 U3KQE9 123 aa10.65□□□□□ -0.7
SDC1-201ENST00000254351 I3L3M4 83 aa10.64□□□□□ -0.71
SDC1-201ENST00000254351 COX6CP09669 75 aa10.64□□□□□ -0.71
SDC1-201ENST00000254351 IGLV4-3A0A075B6K6 122 aa10.64□□□□□ -0.71
SDC1-201ENST00000254351 OOSP1A8MZH6 123 aa10.64□□□□□ -0.71
SDC1-201ENST00000254351 EBI3Q14213 229 aa10.64□□□□□ -0.71
SDC1-201ENST00000254351 FAM110AQ9BQ89 295 aa10.64□□□□□ -0.71
SDC1-201ENST00000254351 PKD1L2Q7Z442 2459 aa10.64□□□□□ -0.71
SDC1-201ENST00000254351 LOC107984640A0A0U1RRK4 108 aa10.63□□□□□ -0.71
SDC1-201ENST00000254351 M0QY20 66 aa10.63□□□□□ -0.71
SDC1-201ENST00000254351 ID1P41134 155 aa10.63□□□□□ -0.71
SDC1-201ENST00000254351 USP9YO00507 2555 aaPredicted RBP10.63□□□□□ -0.71
SDC1-201ENST00000254351 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.63□□□□□ -0.71
SDC1-201ENST00000254351 TRBV27A0A0K0K1C4 114 aa10.63□□□□□ -0.71
SDC1-201ENST00000254351 IGKV2-29A2NJV5 120 aaPredicted RBP10.63□□□□□ -0.71
SDC1-201ENST00000254351 IGHV4OR15-8A0A075B7B6 117 aa10.62□□□□□ -0.71
SDC1-201ENST00000254351 A0A087WW49 117 aa10.62□□□□□ -0.71
SDC1-201ENST00000254351 BLCAPP62952 87 aa10.62□□□□□ -0.71
SDC1-201ENST00000254351 C5orf56Q8N8D9 126 aa10.62□□□□□ -0.71
SDC1-201ENST00000254351 MINOS1-NBL1R4GNA1 71 aa10.62□□□□□ -0.71
SDC1-201ENST00000254351 ITPR1Q14643 2758 aa10.62□□□□□ -0.71
SDC1-201ENST00000254351 ACACBO00763 2458 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 175.5 ms