RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 VCYO14598 125 aa9.69□□□□□ -0.86
MSH2-201ENST00000233146 FAM222AQ5U5X8 452 aa9.69□□□□□ -0.86
MSH2-201ENST00000233146 C16orf95Q9H693 158 aa9.69□□□□□ -0.86
MSH2-201ENST00000233146 OPRPNQ99935 248 aaPredicted RBP9.69□□□□□ -0.86
MSH2-201ENST00000233146 CADP27708 2225 aa9.69□□□□□ -0.86
MSH2-201ENST00000233146 ARHGAP32A7KAX9 2087 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 DCHS1Q96JQ0 3298 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 TRAV12-3A0A0B4J271 114 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 IGLV3-9A0A075B6K5 115 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 A0A087WVE0 104 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 FAM236DA0A1B0GTK5 79 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 IGHV1-46P01743 117 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 FAM236CP0DP71 79 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 PRR9Q5T870 116 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 C9orf47Q6ZRZ4 202 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 SERP1Q9Y6X1 66 aa9.68□□□□□ -0.86
MSH2-201ENST00000233146 IGKV3D-7A0A0C4DH55 119 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 LINC00315P59091 139 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 CNEP1R1Q8N9A8 125 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 FANCD2OSQ96PS1 177 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 PHLDA3Q9Y5J5 127 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 DSPP15924 2871 aaKnown RBP9.67□□□□□ -0.86
MSH2-201ENST00000233146 IGHV1-3A0A0C4DH29 117 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 A0A0J9YXV3 536 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 FAM27E3Q08E93 113 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 MED13Q9UHV7 2174 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 FAM223BA6NKX1 122 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 AVPP01185 164 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 ICE1Q9Y2F5 2266 aa9.67□□□□□ -0.86
MSH2-201ENST00000233146 CEP295Q9C0D2 2601 aa9.66□□□□□ -0.86
MSH2-201ENST00000233146 ZZEF1O43149 2961 aa9.66□□□□□ -0.86
MSH2-201ENST00000233146 IGLV11-55A0A075B6I3 123 aa9.66□□□□□ -0.86
MSH2-201ENST00000233146 FAM223AQ8IWN6 122 aa9.66□□□□□ -0.86
MSH2-201ENST00000233146 KIF25-AS1Q9Y6Z4 181 aa9.66□□□□□ -0.86
MSH2-201ENST00000233146 IGHV1-8P0DP01 117 aa9.65□□□□□ -0.86
MSH2-201ENST00000233146 PRSS33Q8NF86 280 aa9.65□□□□□ -0.86
MSH2-201ENST00000233146 SPTA1P02549 2419 aa9.65□□□□□ -0.86
MSH2-201ENST00000233146 KALRNO60229 2985 aa9.65□□□□□ -0.86
MSH2-201ENST00000233146 TRBV27A0A0K0K1C4 114 aa9.65□□□□□ -0.86
MSH2-201ENST00000233146 MED14OSP0DP75 135 aa9.65□□□□□ -0.86
MSH2-201ENST00000233146 S100A4P26447 101 aaKnown RBP9.65□□□□□ -0.86
MSH2-201ENST00000233146 NDUFA12Q9UI09 145 aa9.65□□□□□ -0.86
MSH2-201ENST00000233146 CTSGP08311 255 aa9.64□□□□□ -0.87
MSH2-201ENST00000233146 C1orf195Q5TG92 126 aa9.64□□□□□ -0.87
MSH2-201ENST00000233146 TMEM243Q9BU79 118 aa9.64□□□□□ -0.87
MSH2-201ENST00000233146 SLC25A15Q9Y619 301 aa9.64□□□□□ -0.87
MSH2-201ENST00000233146 MRPL53Q96EL3 112 aaKnown RBP9.64□□□□□ -0.87
MSH2-201ENST00000233146 IGHV3OR16-8A0A075B7F1 116 aa9.63□□□□□ -0.87
MSH2-201ENST00000233146 RNF5Q99942 180 aa9.63□□□□□ -0.87
MSH2-201ENST00000233146 IGHV3-23P01764 117 aa9.63□□□□□ -0.87
MSH2-201ENST00000233146 SAP25Q8TEE9 199 aa9.63□□□□□ -0.87
MSH2-201ENST00000233146 UBE2D4Q9Y2X8 147 aa9.63□□□□□ -0.87
MSH2-201ENST00000233146 MGAQ8IWI9 3026 aa9.63□□□□□ -0.87
MSH2-201ENST00000233146 PIEZO2Q9H5I5 2752 aa9.63□□□□□ -0.87
MSH2-201ENST00000233146 IGLV1-47P01700 117 aa9.62□□□□□ -0.87
MSH2-201ENST00000233146 IGHV1-58A0A0C4DH39 117 aa9.62□□□□□ -0.87
MSH2-201ENST00000233146 TIMM17BO60830 172 aa9.62□□□□□ -0.87
MSH2-201ENST00000233146 NXPH4O95158 308 aa9.62□□□□□ -0.87
MSH2-201ENST00000233146 SUMO4Q6EEV6 95 aa9.62□□□□□ -0.87
MSH2-201ENST00000233146 FP248Q71RG6 208 aaPredicted RBP9.62□□□□□ -0.87
MSH2-201ENST00000233146 Q8N2B8 174 aa9.62□□□□□ -0.87
MSH2-201ENST00000233146 TECTAO75443 2155 aa9.62□□□□□ -0.87
MSH2-201ENST00000233146 IGF1P05019 195 aa9.62□□□□□ -0.87
MSH2-201ENST00000233146 LOXP28300 417 aaPredicted RBP9.62□□□□□ -0.87
MSH2-201ENST00000233146 WFDC11Q8NEX6 87 aa9.62□□□□□ -0.87
MSH2-201ENST00000233146 MDS2Q8NDY4 140 aa9.61□□□□□ -0.87
MSH2-201ENST00000233146 C16orf92Q96LL3 132 aa9.61□□□□□ -0.87
MSH2-201ENST00000233146 LENEPQ9Y5L5 61 aa9.61□□□□□ -0.87
MSH2-201ENST00000233146 BUB1B-PAK6H3BSN5 160 aa9.61□□□□□ -0.87
MSH2-201ENST00000233146 LINC00846Q9NV44 126 aa9.61□□□□□ -0.87
MSH2-201ENST00000233146 TRBV6-5A0A0K0K1A5 114 aa9.61□□□□□ -0.87
MSH2-201ENST00000233146 NDUFB3O43676 98 aa9.61□□□□□ -0.87
MSH2-201ENST00000233146 RNASE3P12724 160 aaKnown RBP9.61□□□□□ -0.87
MSH2-201ENST00000233146 LYPD2Q6UXB3 125 aa9.61□□□□□ -0.87
MSH2-201ENST00000233146 MUC4Q99102 2169 aa9.61□□□□□ -0.87
MSH2-201ENST00000233146 IGLV4-3A0A075B6K6 122 aa9.6□□□□□ -0.87
MSH2-201ENST00000233146 SMIM26A0A096LP01 95 aa9.6□□□□□ -0.87
MSH2-201ENST00000233146 M0R1B8 84 aa9.6□□□□□ -0.87
MSH2-201ENST00000233146 CHD8Q9HCK8 2581 aa9.6□□□□□ -0.87
MSH2-201ENST00000233146 ACACAQ13085 2346 aa9.6□□□□□ -0.87
MSH2-201ENST00000233146 TRAV21A0A0B4J279 112 aa9.6□□□□□ -0.87
MSH2-201ENST00000233146 TMEM178BH3BS89 294 aa9.6□□□□□ -0.87
MSH2-201ENST00000233146 DNAL4O96015 105 aa9.6□□□□□ -0.87
MSH2-201ENST00000233146 VMO1Q7Z5L0 202 aa9.6□□□□□ -0.87
MSH2-201ENST00000233146 CLPSL1A2RUU4 121 aa9.59□□□□□ -0.87
MSH2-201ENST00000233146 ZFAND2AQ8N6M9 145 aa9.59□□□□□ -0.87
MSH2-201ENST00000233146 FAM218AQ96MZ4 157 aa9.59□□□□□ -0.87
MSH2-201ENST00000233146 COL27A1Q8IZC6 1860 aaPredicted RBP9.59□□□□□ -0.87
MSH2-201ENST00000233146 ZFHX4Q86UP3 3567 aa9.59□□□□□ -0.87
MSH2-201ENST00000233146 IGHG2P01859 326 aa9.59□□□□□ -0.87
MSH2-201ENST00000233146 MRPS36P82909 103 aaKnown RBP9.59□□□□□ -0.87
MSH2-201ENST00000233146 VSIG2Q96IQ7 327 aa9.59□□□□□ -0.87
MSH2-201ENST00000233146 IGHV3-35A0A0C4DH35 117 aa9.59□□□□□ -0.87
MSH2-201ENST00000233146 C9orf106Q8NAJ2 232 aa9.59□□□□□ -0.87
MSH2-201ENST00000233146 GHRHP01286 108 aa9.58□□□□□ -0.88
MSH2-201ENST00000233146 RNASE4P34096 147 aaKnown RBP9.58□□□□□ -0.88
MSH2-201ENST00000233146 XCL1P47992 114 aa9.58□□□□□ -0.88
MSH2-201ENST00000233146 XCL2Q9UBD3 114 aa9.58□□□□□ -0.88
MSH2-201ENST00000233146 GNRH2O43555 120 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms