RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 C10orf99Q6UWK7 81 aa9.19□□□□□ -0.94
NUP88-201ENST00000225696 IGHV3-16A0A0C4DH30 117 aa9.19□□□□□ -0.94
NUP88-201ENST00000225696 IGHV4-61A0A0C4DH41 118 aa9.19□□□□□ -0.94
NUP88-201ENST00000225696 ADARB2-AS1A8MUL3 147 aa9.19□□□□□ -0.94
NUP88-201ENST00000225696 LGALS9O00182 355 aa9.19□□□□□ -0.94
NUP88-201ENST00000225696 ZNF688P0C7X2 276 aa9.19□□□□□ -0.94
NUP88-201ENST00000225696 ZNF56Q15929 161 aa9.19□□□□□ -0.94
NUP88-201ENST00000225696 Q8N1Y9 231 aa9.19□□□□□ -0.94
NUP88-201ENST00000225696 MXRA5Q9NR99 2828 aa9.18□□□□□ -0.94
NUP88-201ENST00000225696 CFAP46Q8IYW2 2715 aa9.18□□□□□ -0.94
NUP88-201ENST00000225696 TRAV2A0A0B4J234 112 aa9.18□□□□□ -0.94
NUP88-201ENST00000225696 TRBV7-9A0A0J9YWB2 115 aa9.18□□□□□ -0.94
NUP88-201ENST00000225696 A0A0J9YXV3 536 aa9.18□□□□□ -0.94
NUP88-201ENST00000225696 TMEM223A0PJW6 202 aa9.18□□□□□ -0.94
NUP88-201ENST00000225696 A8MWV9 139 aa9.18□□□□□ -0.94
NUP88-201ENST00000225696 LGALS3P17931 250 aaKnown RBP9.18□□□□□ -0.94
NUP88-201ENST00000225696 MUSTN1Q8IVN3 82 aa9.18□□□□□ -0.94
NUP88-201ENST00000225696 USMG5Q96IX5 58 aa9.18□□□□□ -0.94
NUP88-201ENST00000225696 GATA3P23771 443 aa9.17□□□□□ -0.94
NUP88-201ENST00000225696 TMEM263Q8WUH6 116 aaKnown RBP9.17□□□□□ -0.94
NUP88-201ENST00000225696 TRBV20-1A0A075B6N2 111 aa9.17□□□□□ -0.94
NUP88-201ENST00000225696 TRBV6-5A0A0K0K1A5 114 aa9.17□□□□□ -0.94
NUP88-201ENST00000225696 C9JAW5 83 aa9.17□□□□□ -0.94
NUP88-201ENST00000225696 IGLV1-40P01703 118 aa9.17□□□□□ -0.94
NUP88-201ENST00000225696 IGHV3-33P01772 117 aa9.17□□□□□ -0.94
NUP88-201ENST00000225696 ZNF22P17026 224 aaPredicted RBP9.17□□□□□ -0.94
NUP88-201ENST00000225696 C9orf85Q96MD7 179 aa9.17□□□□□ -0.94
NUP88-201ENST00000225696 CEMP1Q6PRD7 247 aaPredicted RBP9.16□□□□□ -0.94
NUP88-201ENST00000225696 FAM104AQ969W3 186 aa9.16□□□□□ -0.94
NUP88-201ENST00000225696 Q9UF83 564 aa9.16□□□□□ -0.94
NUP88-201ENST00000225696 USP9YO00507 2555 aaPredicted RBP9.16□□□□□ -0.94
NUP88-201ENST00000225696 CENPEQ02224 2701 aa9.16□□□□□ -0.94
NUP88-201ENST00000225696 A6NDX4 124 aa9.16□□□□□ -0.94
NUP88-201ENST00000225696 SLC25A20O43772 301 aa9.16□□□□□ -0.94
NUP88-201ENST00000225696 PRM2P04554 102 aa9.16□□□□□ -0.94
NUP88-201ENST00000225696 SPINK13Q1W4C9 94 aa9.16□□□□□ -0.94
NUP88-201ENST00000225696 RHODO00212 210 aa9.15□□□□□ -0.94
NUP88-201ENST00000225696 LEPROTO15243 131 aa9.15□□□□□ -0.94
NUP88-201ENST00000225696 PROK1P58294 105 aa9.15□□□□□ -0.94
NUP88-201ENST00000225696 RNASE13Q5GAN3 156 aaKnown RBP9.15□□□□□ -0.94
NUP88-201ENST00000225696 IGLV4-3A0A075B6K6 122 aa9.14□□□□□ -0.95
NUP88-201ENST00000225696 IGHV3-73A0A0B4J1V6 119 aa9.14□□□□□ -0.95
NUP88-201ENST00000225696 BRI3O95415 125 aa9.14□□□□□ -0.95
NUP88-201ENST00000225696 LY6DQ14210 128 aa9.14□□□□□ -0.95
NUP88-201ENST00000225696 LYRM7Q5U5X0 104 aa9.14□□□□□ -0.95
NUP88-201ENST00000225696 C20orf203Q8NBC4 194 aa9.14□□□□□ -0.95
NUP88-201ENST00000225696 RNF183Q96D59 192 aa9.14□□□□□ -0.95
NUP88-201ENST00000225696 PRRC2AP48634 2157 aaKnown RBP9.14□□□□□ -0.95
NUP88-201ENST00000225696 AVPP01185 164 aa9.14□□□□□ -0.95
NUP88-201ENST00000225696 NSUN5P1Q3KNT7 163 aa9.14□□□□□ -0.95
NUP88-201ENST00000225696 SPXQ9BT56 116 aa9.14□□□□□ -0.95
NUP88-201ENST00000225696 BEX4Q9NWD9 120 aaPredicted RBP9.14□□□□□ -0.95
NUP88-201ENST00000225696 TRAV8-3A0A0A6YYJ7 113 aa9.13□□□□□ -0.95
NUP88-201ENST00000225696 A8MZ25 164 aa9.13□□□□□ -0.95
NUP88-201ENST00000225696 CFHR3Q02985 330 aa9.13□□□□□ -0.95
NUP88-201ENST00000225696 Q6ZSV7 163 aa9.13□□□□□ -0.95
NUP88-201ENST00000225696 A0A0J9YX75 114 aa9.13□□□□□ -0.95
NUP88-201ENST00000225696 A0A0J9YXY3 114 aa9.13□□□□□ -0.95
NUP88-201ENST00000225696 H3BUA1 57 aa9.13□□□□□ -0.95
NUP88-201ENST00000225696 ID1P41134 155 aa9.13□□□□□ -0.95
NUP88-201ENST00000225696 ERG28Q9UKR5 140 aa9.13□□□□□ -0.95
NUP88-201ENST00000225696 POLQO75417 2590 aa9.12□□□□□ -0.95
NUP88-201ENST00000225696 ADAMTSL4-AS1Q5T5F5 129 aa9.12□□□□□ -0.95
NUP88-201ENST00000225696 DUX5Q96PT3 197 aa9.12□□□□□ -0.95
NUP88-201ENST00000225696 LITAFQ99732 161 aa9.12□□□□□ -0.95
NUP88-201ENST00000225696 AKAP9Q99996 3911 aa9.12□□□□□ -0.95
NUP88-201ENST00000225696 M0R2P5 195 aa9.12□□□□□ -0.95
NUP88-201ENST00000225696 CRLF1O75462 422 aa9.12□□□□□ -0.95
NUP88-201ENST00000225696 RBMY1A1P0DJD3 496 aaKnown RBP9.12□□□□□ -0.95
NUP88-201ENST00000225696 RBMY1CP0DJD4 496 aa9.12□□□□□ -0.95
NUP88-201ENST00000225696 IGHV3-30-3P0DP02 117 aa9.12□□□□□ -0.95
NUP88-201ENST00000225696 HTN1P15515 57 aa9.12□□□□□ -0.95
NUP88-201ENST00000225696 RBMY1FQ15415 496 aaKnown RBP9.12□□□□□ -0.95
NUP88-201ENST00000225696 VCX2Q9H322 139 aa9.12□□□□□ -0.95
NUP88-201ENST00000225696 IGHV1OR15-1A0A075B7D0 117 aa9.11□□□□□ -0.95
NUP88-201ENST00000225696 TEX49A0A1B0GTD5 131 aa9.11□□□□□ -0.95
NUP88-201ENST00000225696 RHOHQ15669 191 aa9.11□□□□□ -0.95
NUP88-201ENST00000225696 NTN5Q8WTR8 489 aaPredicted RBP9.11□□□□□ -0.95
NUP88-201ENST00000225696 USP9XQ93008 2570 aaPredicted RBP9.11□□□□□ -0.95
NUP88-201ENST00000225696 I3L3M4 83 aa9.1□□□□□ -0.95
NUP88-201ENST00000225696 K7EMT4 169 aa9.1□□□□□ -0.95
NUP88-201ENST00000225696 NPC2P61916 151 aa9.1□□□□□ -0.95
NUP88-201ENST00000225696 Q1RN00 199 aa9.1□□□□□ -0.95
NUP88-201ENST00000225696 IGHV4-30-2A0A087WSY4 118 aa9.1□□□□□ -0.95
NUP88-201ENST00000225696 A0A0B4J2C4 111 aa9.1□□□□□ -0.95
NUP88-201ENST00000225696 TRIAP1O43715 76 aa9.1□□□□□ -0.95
NUP88-201ENST00000225696 KNCNA6PVL3 124 aa9.09□□□□□ -0.95
NUP88-201ENST00000225696 PRSS2P07478 247 aa9.09□□□□□ -0.95
NUP88-201ENST00000225696 PSMB8P28062 276 aa9.09□□□□□ -0.95
NUP88-201ENST00000225696 CITED1Q99966 193 aa9.09□□□□□ -0.95
NUP88-201ENST00000225696 TRAV4A0A0B4J268 109 aa9.09□□□□□ -0.95
NUP88-201ENST00000225696 K7EQG2 157 aa9.09□□□□□ -0.95
NUP88-201ENST00000225696 LINC01620Q4KN68 170 aa9.09□□□□□ -0.95
NUP88-201ENST00000225696 Q6ZSN1 163 aa9.09□□□□□ -0.95
NUP88-201ENST00000225696 NHLRC4P0CG21 123 aaPredicted RBP9.08□□□□□ -0.96
NUP88-201ENST00000225696 SYNJ2BPP57105 145 aa9.08□□□□□ -0.96
NUP88-201ENST00000225696 NACAE9PAV3 2078 aa9.08□□□□□ -0.96
NUP88-201ENST00000225696 IGHV4-59P01825 116 aa9.07□□□□□ -0.96
NUP88-201ENST00000225696 CD28P10747 220 aa9.07□□□□□ -0.96
NUP88-201ENST00000225696 C10orf105Q8TEF2 133 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms