RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 CFAP126Q5VTH2 177 aa12.62□□□□□ -0.39
VRK1-201ENST00000216639 UFSP1Q6NVU6 142 aa12.62□□□□□ -0.39
VRK1-201ENST00000216639 SLC25A34Q6PIV7 304 aa12.62□□□□□ -0.39
VRK1-201ENST00000216639 MRPL16Q9NX20 251 aaKnown RBP12.62□□□□□ -0.39
VRK1-201ENST00000216639 IGHV3-73A0A0B4J1V6 119 aa12.62□□□□□ -0.39
VRK1-201ENST00000216639 CYSRT1A8MQ03 144 aa12.62□□□□□ -0.39
VRK1-201ENST00000216639 ERASQ7Z444 233 aa12.62□□□□□ -0.39
VRK1-201ENST00000216639 RNASE8Q8TDE3 154 aaKnown RBP12.62□□□□□ -0.39
VRK1-201ENST00000216639 ZMAT4Q9H898 229 aa12.62□□□□□ -0.39
VRK1-201ENST00000216639 MRPS16Q9Y3D3 137 aaKnown RBP12.62□□□□□ -0.39
VRK1-201ENST00000216639 A0A087WX48 190 aa12.61□□□□□ -0.39
VRK1-201ENST00000216639 TRAV12-1A0A0B4J245 112 aa12.61□□□□□ -0.39
VRK1-201ENST00000216639 I3L3M4 83 aa12.61□□□□□ -0.39
VRK1-201ENST00000216639 RS1O15537 224 aa12.61□□□□□ -0.39
VRK1-201ENST00000216639 DPM2O94777 84 aa12.61□□□□□ -0.39
VRK1-201ENST00000216639 IGKCP01834 107 aa12.61□□□□□ -0.39
VRK1-201ENST00000216639 RHOHQ15669 191 aa12.61□□□□□ -0.39
VRK1-201ENST00000216639 SNHG12Q9BXW3 62 aa12.61□□□□□ -0.39
VRK1-201ENST00000216639 IL17DQ8TAD2 202 aa12.6□□□□□ -0.39
VRK1-201ENST00000216639 C2orf88Q9BSF0 95 aa12.6□□□□□ -0.39
VRK1-201ENST00000216639 TNFRSF18Q9Y5U5 241 aa12.6□□□□□ -0.39
VRK1-201ENST00000216639 EREGO14944 169 aa12.59□□□□□ -0.39
VRK1-201ENST00000216639 GIG44P09565 113 aaPredicted RBP12.59□□□□□ -0.39
VRK1-201ENST00000216639 RIPPLY3P57055 190 aa12.59□□□□□ -0.39
VRK1-201ENST00000216639 C16orf74Q96GX8 76 aa12.59□□□□□ -0.39
VRK1-201ENST00000216639 TP53TG1Q9Y2A0 90 aa12.59□□□□□ -0.39
VRK1-201ENST00000216639 COX8AP10176 69 aa12.59□□□□□ -0.39
VRK1-201ENST00000216639 FN1P02751 2386 aaKnown RBP12.59□□□□□ -0.39
VRK1-201ENST00000216639 TRGV1A0A0A0MS02 117 aa12.58□□□□□ -0.4
VRK1-201ENST00000216639 PLNP26678 52 aa12.58□□□□□ -0.4
VRK1-201ENST00000216639 STPG4Q8N801 248 aa12.58□□□□□ -0.4
VRK1-201ENST00000216639 TMEM141Q96I45 108 aa12.58□□□□□ -0.4
VRK1-201ENST00000216639 IGHV3-53P01767 116 aa12.57□□□□□ -0.4
VRK1-201ENST00000216639 ANKRD39Q53RE8 183 aa12.57□□□□□ -0.4
VRK1-201ENST00000216639 NEXN-AS1Q8NBZ9 246 aa12.57□□□□□ -0.4
VRK1-201ENST00000216639 OR4C5Q8NGB2 326 aa12.57□□□□□ -0.4
VRK1-201ENST00000216639 DNAJC30Q96LL9 226 aa12.57□□□□□ -0.4
VRK1-201ENST00000216639 MRPL35Q9NZE8 188 aaKnown RBP12.57□□□□□ -0.4
VRK1-201ENST00000216639 F8VRH5 84 aa12.57□□□□□ -0.4
VRK1-201ENST00000216639 DAZ2Q13117 558 aaKnown RBP12.57□□□□□ -0.4
VRK1-201ENST00000216639 TIMM17AQ99595 171 aa12.57□□□□□ -0.4
VRK1-201ENST00000216639 CHTOPQ9Y3Y2 248 aaKnown RBP12.57□□□□□ -0.4
VRK1-201ENST00000216639 RRN3P1Q2M238 152 aa12.56□□□□□ -0.4
VRK1-201ENST00000216639 CSNK1G2-AS1Q8NCQ2 148 aa12.56□□□□□ -0.4
VRK1-201ENST00000216639 BAALCQ8WXS3 180 aa12.56□□□□□ -0.4
VRK1-201ENST00000216639 TSHBP01222 138 aa12.55□□□□□ -0.4
VRK1-201ENST00000216639 HHLA3Q9XRX5 114 aa12.55□□□□□ -0.4
VRK1-201ENST00000216639 IGIPA6NJ69 53 aa12.54□□□□□ -0.4
VRK1-201ENST00000216639 BATFQ16520 125 aa12.54□□□□□ -0.4
VRK1-201ENST00000216639 NSD1Q96L73 2696 aaPredicted RBP12.54□□□□□ -0.4
VRK1-201ENST00000216639 P0DMU3 169 aa12.54□□□□□ -0.4
VRK1-201ENST00000216639 FAM231AP0DMU4 169 aa12.54□□□□□ -0.4
VRK1-201ENST00000216639 FAM231CP0DMU5 169 aa12.54□□□□□ -0.4
VRK1-201ENST00000216639 DEFB104AQ8WTQ1 72 aa12.54□□□□□ -0.4
VRK1-201ENST00000216639 TRAV4A0A0B4J268 109 aa12.53□□□□□ -0.4
VRK1-201ENST00000216639 NMUP48645 174 aa12.53□□□□□ -0.4
VRK1-201ENST00000216639 RPL39P62891 51 aaKnown RBP12.53□□□□□ -0.4
VRK1-201ENST00000216639 ZC2HC1BQ5TFG8 222 aa12.53□□□□□ -0.4
VRK1-201ENST00000216639 Q6ZSN1 163 aa12.53□□□□□ -0.4
VRK1-201ENST00000216639 NOP10Q9NPE3 64 aaKnown RBP12.53□□□□□ -0.4
VRK1-201ENST00000216639 SETD2Q9BYW2 2564 aaPredicted RBP12.53□□□□□ -0.4
VRK1-201ENST00000216639 HIVEP1P15822 2718 aa12.53□□□□□ -0.4
VRK1-201ENST00000216639 PRSS29PA6NIE9 313 aa12.52□□□□□ -0.41
VRK1-201ENST00000216639 Q6ZTI0 123 aa12.52□□□□□ -0.41
VRK1-201ENST00000216639 C20orf203Q8NBC4 194 aa12.52□□□□□ -0.41
VRK1-201ENST00000216639 C2CD3Q4AC94 2353 aa12.52□□□□□ -0.41
VRK1-201ENST00000216639 DLEU1O43261 78 aa12.51□□□□□ -0.41
VRK1-201ENST00000216639 CIDEAO60543 219 aa12.51□□□□□ -0.41
VRK1-201ENST00000216639 PMVKQ15126 192 aa12.51□□□□□ -0.41
VRK1-201ENST00000216639 BOD1L2Q8IYS8 172 aa12.51□□□□□ -0.41
VRK1-201ENST00000216639 PAPPA-AS1Q5QFB9 102 aa12.51□□□□□ -0.41
VRK1-201ENST00000216639 WFDC9Q8NEX5 89 aa12.51□□□□□ -0.41
VRK1-201ENST00000216639 SPATA3Q8NHX4 192 aa12.51□□□□□ -0.41
VRK1-201ENST00000216639 OVOL2Q9BRP0 275 aa12.51□□□□□ -0.41
VRK1-201ENST00000216639 PLAC8L1A1L4L8 177 aa12.5□□□□□ -0.41
VRK1-201ENST00000216639 FGF6P10767 208 aa12.5□□□□□ -0.41
VRK1-201ENST00000216639 TCTAP57738 103 aa12.5□□□□□ -0.41
VRK1-201ENST00000216639 COL5A1-AS1Q5SY13 56 aa12.5□□□□□ -0.41
VRK1-201ENST00000216639 TRBV10-1A0A0K0K1A3 114 aa12.49□□□□□ -0.41
VRK1-201ENST00000216639 ZNF479Q96JC4 524 aa12.49□□□□□ -0.41
VRK1-201ENST00000216639 TP73-AS1Q9UF72 201 aa12.49□□□□□ -0.41
VRK1-201ENST00000216639 NACAE9PAV3 2078 aa12.49□□□□□ -0.41
VRK1-201ENST00000216639 TRGV2A0A075B6R0 118 aa12.48□□□□□ -0.41
VRK1-201ENST00000216639 SIVA1O15304 175 aa12.48□□□□□ -0.41
VRK1-201ENST00000216639 HINT1P49773 126 aaPredicted RBP12.48□□□□□ -0.41
VRK1-201ENST00000216639 C12orf54Q6X4T0 127 aa12.48□□□□□ -0.41
VRK1-201ENST00000216639 A0A1B0GV90 55 aa12.48□□□□□ -0.41
VRK1-201ENST00000216639 TMEM97Q5BJF2 176 aa12.48□□□□□ -0.41
VRK1-201ENST00000216639 CST9LQ9H4G1 147 aa12.48□□□□□ -0.41
VRK1-201ENST00000216639 GAGE12BA1L429 117 aa12.47□□□□□ -0.41
VRK1-201ENST00000216639 K7EQD1 137 aa12.47□□□□□ -0.41
VRK1-201ENST00000216639 GAGE7O76087 117 aa12.47□□□□□ -0.41
VRK1-201ENST00000216639 GAGE12FP0CL80 117 aa12.47□□□□□ -0.41
VRK1-201ENST00000216639 GAGE12GP0CL81 117 aa12.47□□□□□ -0.41
VRK1-201ENST00000216639 GAGE12IP0CL82 117 aa12.47□□□□□ -0.41
VRK1-201ENST00000216639 RPL36AP83881 106 aaKnown RBP12.47□□□□□ -0.41
VRK1-201ENST00000216639 COTL1Q14019 142 aa12.47□□□□□ -0.41
VRK1-201ENST00000216639 RPL36ALQ969Q0 106 aaKnown RBP12.47□□□□□ -0.41
VRK1-201ENST00000216639 TRBV7-3A0A075B6L6 115 aa12.46□□□□□ -0.41
VRK1-201ENST00000216639 SMIM9A6NGZ8 99 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms