RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	GAGE12J	A6NER3	117 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	CRYGD	P07320	174 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	LINC00694	P0DN24	101 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	GNG4	P50150	75 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	GAGE1	Q13065	139 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	GAGE4	Q13068	117 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	GAGE5	Q13069	117 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	GAGE13	Q4V321	117 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	OR10J3	Q5JRS4	329 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	LELP1	Q5T871	98 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	ALKAL2	Q6UX46	152 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939		Q6ZRN7	208 aa	Predicted RBP	10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	NFE4	Q86UQ8	179 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	OR10AG1	Q8NH19	301 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	SMIM12	Q96EX1	92 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	BOLA1	Q9Y3E2	137 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	KIAA1109	Q2LD37	5005 aa		10.2	□□□□□ -0.78
PHGDH-231	ENST00000641939	IGHV3-38	A0A0C4DH36	116 aa		10.19	□□□□□ -0.78
PHGDH-231	ENST00000641939	SNAI2	O43623	268 aa		10.19	□□□□□ -0.78
PHGDH-231	ENST00000641939	IGLV2-8	P01709	118 aa		10.19	□□□□□ -0.78
PHGDH-231	ENST00000641939	BLOC1S1	P78537	153 aa		10.19	□□□□□ -0.78
PHGDH-231	ENST00000641939	C10orf126	Q8N4M7	172 aa		10.19	□□□□□ -0.78
PHGDH-231	ENST00000641939	DAZAP1	Q96EP5	407 aa	Known RBP	10.19	□□□□□ -0.78
PHGDH-231	ENST00000641939	SSBP4	Q9BWG4	385 aa	Predicted RBP	10.19	□□□□□ -0.78
PHGDH-231	ENST00000641939	KRTAP17-1	Q9BYP8	105 aa		10.19	□□□□□ -0.78
PHGDH-231	ENST00000641939	MSRB1	Q9NZV6	116 aa		10.19	□□□□□ -0.78
PHGDH-231	ENST00000641939		Q9UF83	564 aa		10.19	□□□□□ -0.78
PHGDH-231	ENST00000641939	TNFRSF18	Q9Y5U5	241 aa		10.19	□□□□□ -0.78
PHGDH-231	ENST00000641939	OR5AL1	P0C617	328 aa		10.18	□□□□□ -0.78
PHGDH-231	ENST00000641939	NKX2-5	P52952	324 aa	Predicted RBP	10.18	□□□□□ -0.78
PHGDH-231	ENST00000641939	LINC01556	Q5JQF7	62 aa		10.18	□□□□□ -0.78
PHGDH-231	ENST00000641939	LRP1B	Q9NZR2	4599 aa		10.18	□□□□□ -0.78
PHGDH-231	ENST00000641939	DNAH5	Q8TE73	4624 aa		10.18	□□□□□ -0.78
PHGDH-231	ENST00000641939	TRBV20OR9-2	A0A075B6H5	130 aa		10.17	□□□□□ -0.78
PHGDH-231	ENST00000641939	MUC21	A0A0G2JKD1	596 aa		10.17	□□□□□ -0.78
PHGDH-231	ENST00000641939	MUC21	A0A140T8X8	626 aa		10.17	□□□□□ -0.78
PHGDH-231	ENST00000641939	C16orf90	A8MZG2	172 aa		10.17	□□□□□ -0.78
PHGDH-231	ENST00000641939	SPANXN1	Q5VSR9	72 aa		10.17	□□□□□ -0.78
PHGDH-231	ENST00000641939	SPATA12	Q7Z6I5	190 aa		10.17	□□□□□ -0.78
PHGDH-231	ENST00000641939	BIN3	Q9NQY0	253 aa		10.17	□□□□□ -0.78
PHGDH-231	ENST00000641939	C19orf71	A6NCJ1	209 aa		10.16	□□□□□ -0.78
PHGDH-231	ENST00000641939	RPS20	P60866	119 aa	Known RBP	10.16	□□□□□ -0.78
PHGDH-231	ENST00000641939	OR2D3	Q8NGH3	330 aa		10.16	□□□□□ -0.78
PHGDH-231	ENST00000641939	TRBV10-1	A0A0K0K1A3	114 aa		10.15	□□□□□ -0.78
PHGDH-231	ENST00000641939		P01737	135 aa		10.15	□□□□□ -0.78
PHGDH-231	ENST00000641939	GZMB	P10144	247 aa		10.15	□□□□□ -0.78
PHGDH-231	ENST00000641939	RAB4B	P61018	213 aa		10.15	□□□□□ -0.78
PHGDH-231	ENST00000641939	LYPD6B	Q8NI32	183 aa		10.15	□□□□□ -0.78
PHGDH-231	ENST00000641939		A0A087WWC5	75 aa		10.14	□□□□□ -0.79
PHGDH-231	ENST00000641939	XKRY2	A2RUG3	117 aa		10.14	□□□□□ -0.79
PHGDH-231	ENST00000641939	RBFOX3	A6NFN3	312 aa		10.14	□□□□□ -0.79
PHGDH-231	ENST00000641939	SST	P61278	116 aa		10.14	□□□□□ -0.79
PHGDH-231	ENST00000641939	ZNF56	Q15929	161 aa		10.14	□□□□□ -0.79
PHGDH-231	ENST00000641939	FER1L6-AS1	Q8NA97	138 aa		10.14	□□□□□ -0.79
PHGDH-231	ENST00000641939	IBA57-AS1	B1ANH7	110 aa		10.13	□□□□□ -0.79
PHGDH-231	ENST00000641939	EREG	O14944	169 aa		10.13	□□□□□ -0.79
PHGDH-231	ENST00000641939	IGHV3-30	P01768	117 aa		10.13	□□□□□ -0.79
PHGDH-231	ENST00000641939	IGHV3-33	P01772	117 aa		10.13	□□□□□ -0.79
PHGDH-231	ENST00000641939	IGLC6	P0CF74	106 aa		10.13	□□□□□ -0.79
PHGDH-231	ENST00000641939	IGHV3-30-3	P0DP02	117 aa		10.13	□□□□□ -0.79
PHGDH-231	ENST00000641939	IGHV3-30-5	P0DP03	117 aa		10.13	□□□□□ -0.79
PHGDH-231	ENST00000641939	ERVFC1-1	P60608	527 aa		10.13	□□□□□ -0.79
PHGDH-231	ENST00000641939	RPL36A	P83881	106 aa	Known RBP	10.13	□□□□□ -0.79
PHGDH-231	ENST00000641939	RPL36AL	Q969Q0	106 aa	Known RBP	10.13	□□□□□ -0.79
PHGDH-231	ENST00000641939	TPPP3	Q9BW30	176 aa		10.13	□□□□□ -0.79
PHGDH-231	ENST00000641939	TRBV7-3	A0A075B6L6	115 aa		10.12	□□□□□ -0.79
PHGDH-231	ENST00000641939	TMEM250	H0YL14	139 aa		10.12	□□□□□ -0.79
PHGDH-231	ENST00000641939	SMIM17	P0DL12	118 aa		10.12	□□□□□ -0.79
PHGDH-231	ENST00000641939	KRTAP10-2	P60368	255 aa		10.12	□□□□□ -0.79
PHGDH-231	ENST00000641939	OR10G8	Q8NGN5	311 aa		10.12	□□□□□ -0.79
PHGDH-231	ENST00000641939	AP1S3	Q96PC3	154 aa		10.12	□□□□□ -0.79
PHGDH-231	ENST00000641939		F5H697	171 aa		10.11	□□□□□ -0.79
PHGDH-231	ENST00000641939	UBE2D3	P61077	147 aa		10.11	□□□□□ -0.79
PHGDH-231	ENST00000641939	UBE2D2	P62837	147 aa		10.11	□□□□□ -0.79
PHGDH-231	ENST00000641939	CACNG7	P62955	275 aa		10.11	□□□□□ -0.79
PHGDH-231	ENST00000641939	NUDT10	Q8NFP7	164 aa		10.11	□□□□□ -0.79
PHGDH-231	ENST00000641939	OCC1	Q8TAD7	63 aa		10.11	□□□□□ -0.79
PHGDH-231	ENST00000641939	NUDT11	Q96G61	164 aa		10.11	□□□□□ -0.79
PHGDH-231	ENST00000641939		A0A087WTM6	91 aa		10.1	□□□□□ -0.79
PHGDH-231	ENST00000641939		F2Z2F3	143 aa		10.1	□□□□□ -0.79
PHGDH-231	ENST00000641939		K7EN84	100 aa		10.1	□□□□□ -0.79
PHGDH-231	ENST00000641939	LAGE3	Q14657	143 aa		10.1	□□□□□ -0.79
PHGDH-231	ENST00000641939	TOR2A	Q5JU69	321 aa		10.1	□□□□□ -0.79
PHGDH-231	ENST00000641939	NEXN-AS1	Q8NBZ9	246 aa		10.1	□□□□□ -0.79
PHGDH-231	ENST00000641939	KIF25-AS1	Q9Y6Z4	181 aa		10.1	□□□□□ -0.79
PHGDH-231	ENST00000641939	RYR1	P21817	5038 aa		10.1	□□□□□ -0.79
PHGDH-231	ENST00000641939	LYZL1	Q6UWQ5	148 aa		10.09	□□□□□ -0.79
PHGDH-231	ENST00000641939		Q8N3U1	123 aa		10.09	□□□□□ -0.79
PHGDH-231	ENST00000641939	EIF5A2	Q9GZV4	153 aa	Known RBP	10.09	□□□□□ -0.79
PHGDH-231	ENST00000641939	RNASE7	Q9H1E1	156 aa	Known RBP	10.09	□□□□□ -0.79
PHGDH-231	ENST00000641939		Q9HAA7	133 aa		10.09	□□□□□ -0.79
PHGDH-231	ENST00000641939	HSPG2	P98160	4391 aa		10.08	□□□□□ -0.8
PHGDH-231	ENST00000641939	PSCA	O43653	123 aa		10.08	□□□□□ -0.8
PHGDH-231	ENST00000641939	CEBPG	P53567	150 aa		10.08	□□□□□ -0.8
PHGDH-231	ENST00000641939	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	10.08	□□□□□ -0.8
PHGDH-231	ENST00000641939	FAM210A	Q96ND0	272 aa		10.08	□□□□□ -0.8
PHGDH-231	ENST00000641939	RPP21	Q9H633	154 aa	Known RBP	10.08	□□□□□ -0.8
PHGDH-231	ENST00000641939	PGPEP1	Q9NXJ5	209 aa		10.08	□□□□□ -0.8
PHGDH-231	ENST00000641939	NDUFS6	O75380	124 aa	Known RBP	10.07	□□□□□ -0.8
PHGDH-231	ENST00000641939	MGP	P08493	103 aa		10.07	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms