RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 IGFBP3P17936 291 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-218ENST00000640036 AMTNQ6UX39 209 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 WFDC9Q8NEX5 89 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 KIAA1549LQ6ZVL6 1849 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 A0A087WWL8 130 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 TRAV1-1A0A0B4J248 108 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 AMN1Q8IY45 258 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 UBE2D4Q9Y2X8 147 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 SERP1Q9Y6X1 66 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 CFAP46Q8IYW2 2715 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 TMEM61Q8N0U2 210 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 PYYP10082 97 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 ETDBQ3ZM63 59 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 HIGD2BQ4VC39 106 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 A0A0U1RRA0 63 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 C1orf134Q5TEV5 83 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 C20orf144Q9BQM9 153 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 SHANK2-AS3Q9BTD1 123 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 FAM231BA6NCW3 169 aa3.9□□□□□ -1.78
SCN1A-218ENST00000640036 ZNF134P52741 427 aa3.9□□□□□ -1.78
SCN1A-218ENST00000640036 C9orf62Q8N4C0 152 aa3.9□□□□□ -1.78
SCN1A-218ENST00000640036 NPBQ8NG41 125 aa3.9□□□□□ -1.78
SCN1A-218ENST00000640036 ETDCA0A1B0GVM5 59 aa3.9□□□□□ -1.78
SCN1A-218ENST00000640036 RNASE2P10153 161 aaKnown RBP3.9□□□□□ -1.78
SCN1A-218ENST00000640036 PRSS47A8MTI9 375 aa3.9□□□□□ -1.78
SCN1A-218ENST00000640036 SIVA1O15304 175 aa3.9□□□□□ -1.78
SCN1A-218ENST00000640036 HAMPP81172 84 aa3.9□□□□□ -1.78
SCN1A-218ENST00000640036 C14orf178Q8N769 122 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-218ENST00000640036 TMEM170AQ8WVE7 144 aa3.9□□□□□ -1.78
SCN1A-218ENST00000640036 IGKV1-27A0A075B6S5 117 aa3.9□□□□□ -1.79
SCN1A-218ENST00000640036 ARMS2P0C7Q2 107 aa3.9□□□□□ -1.79
SCN1A-218ENST00000640036 TFF3Q07654 80 aa3.9□□□□□ -1.79
SCN1A-218ENST00000640036 LSM4Q9Y4Z0 139 aaKnown RBP3.9□□□□□ -1.79
SCN1A-218ENST00000640036 FNDC4Q9H6D8 234 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-218ENST00000640036 VSIRQ9H7M9 311 aa3.9□□□□□ -1.79
SCN1A-218ENST00000640036 I3L3M4 83 aa3.9□□□□□ -1.79
SCN1A-218ENST00000640036 STAB1Q9NY15 2570 aa3.9□□□□□ -1.79
SCN1A-218ENST00000640036 D6R8Y8 96 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 Q8TAT8 98 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 TMEM263Q8WUH6 116 aaKnown RBP3.89□□□□□ -1.79
SCN1A-218ENST00000640036 C14orf132Q9NPU4 83 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 KLK12Q9UKR0 248 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 FHL1Q13642 323 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 C11orf71Q6IPW1 123 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 NDUFA4L2Q9NRX3 87 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 TEX22C9J3V5 150 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 GNG5P63218 68 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 TRAV26-1A0A087WT03 109 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 LINC00473A8K010 186 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 FSTL3O95633 263 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 FAM222AQ5U5X8 452 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 GFI1BQ5VTD9 330 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 C14orf144Q96I85 54 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 RBM38Q9H0Z9 239 aaKnown RBP3.89□□□□□ -1.79
SCN1A-218ENST00000640036 C9JAW5 83 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 XCL1P47992 114 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 NMSQ5H8A3 153 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 IGFL4Q6B9Z1 124 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 CENPFP49454 3210 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 A4D1N5 150 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 IGHV4-30-4P0DP06 118 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 SCRT2Q9NQ03 307 aa3.89□□□□□ -1.79
SCN1A-218ENST00000640036 DAZ2Q13117 558 aaKnown RBP3.88□□□□□ -1.79
SCN1A-218ENST00000640036 DAZ4Q86SG3 579 aaKnown RBP3.88□□□□□ -1.79
SCN1A-218ENST00000640036 RETNQ9HD89 108 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 DAZ3Q9NR90 486 aaKnown RBP3.88□□□□□ -1.79
SCN1A-218ENST00000640036 CARHSP1Q9Y2V2 147 aaKnown RBP3.88□□□□□ -1.79
SCN1A-218ENST00000640036 USP17L23D6RBM5 183 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 H0YIZ8 118 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 TMEM256-PLSCR3K7ERE1 68 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 ATP5EP2Q5VTU8 51 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 FAM104BQ5XKR9 115 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 B9D2Q9BPU9 175 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-218ENST00000640036 ZNF503-AS2A6NEH8 195 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 RS1O15537 224 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 DLEU1O43261 78 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 FRMD6-AS1P0C7T7 363 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 PYY3Q5JQD4 70 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 LY6G6FQ5SQ64 297 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 ZFP2Q6ZN57 461 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 MUC7Q8TAX7 377 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 A0A0J9YWU9 116 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 COX7A2LO14548 114 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 UBE2V1Q13404 147 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 C1orf229Q6ZS94 237 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-218ENST00000640036 SS18L2Q9UHA2 77 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 ITPR3Q14573 2671 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 TRAV26-2A0A0B4J265 109 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 IGKV2-24A0A0C4DH68 120 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 NDUFS6O75380 124 aaKnown RBP3.88□□□□□ -1.79
SCN1A-218ENST00000640036 VSIG2Q96IQ7 327 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 C20orf173Q96LM9 149 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 WDR83OSQ9Y284 106 aa3.88□□□□□ -1.79
SCN1A-218ENST00000640036 DEFB114Q30KQ6 69 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 LENEPQ9Y5L5 61 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 FAM240AA0A1B0GVK7 77 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 NREPQ16612 68 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 Q8N7P7 452 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 PRO1854Q9UHT4 67 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms