RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 SNRPD3P62318 126 aaKnown RBP12.76□□□□□ -0.37
CLN3-256ENST00000637107 SCRT2Q9NQ03 307 aa12.76□□□□□ -0.37
CLN3-256ENST00000637107 ZNF256Q9Y2P7 627 aaPredicted RBP12.76□□□□□ -0.37
CLN3-256ENST00000637107 A0A0J9YX75 114 aa12.75□□□□□ -0.37
CLN3-256ENST00000637107 Q6ZN92 141 aa12.75□□□□□ -0.37
CLN3-256ENST00000637107 FBN3Q75N90 2809 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 hDV102S1A0JD36 115 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 M0R381 172 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 RNASE3P12724 160 aaKnown RBP12.74□□□□□ -0.37
CLN3-256ENST00000637107 LEPP41159 167 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 NRACQ8N912 160 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 ODF3Q96PU9 254 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 TRAV26-2A0A0B4J265 109 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 PRSS47A8MTI9 375 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 Q8N8P6 123 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 PMCHL2Q9BQD1 86 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 ST20Q9HBF5 79 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 PHLDA3Q9Y5J5 127 aa12.74□□□□□ -0.37
CLN3-256ENST00000637107 IGLV2-18A0A075B6J9 118 aa12.73□□□□□ -0.37
CLN3-256ENST00000637107 HNRNPA3P51991 378 aaKnown RBP12.73□□□□□ -0.37
CLN3-256ENST00000637107 MRAP2Q96G30 205 aa12.73□□□□□ -0.37
CLN3-256ENST00000637107 C7orf71A4D174 169 aa12.72□□□□□ -0.37
CLN3-256ENST00000637107 FCER1GP30273 86 aa12.72□□□□□ -0.37
CLN3-256ENST00000637107 FAM159AQ6UWV7 190 aa12.72□□□□□ -0.37
CLN3-256ENST00000637107 DEFB125Q8N687 156 aa12.72□□□□□ -0.37
CLN3-256ENST00000637107 IFI27L1Q96BM0 104 aa12.72□□□□□ -0.37
CLN3-256ENST00000637107 DPH3P1Q9H4G8 78 aa12.72□□□□□ -0.37
CLN3-256ENST00000637107 ZMAT5Q9UDW3 170 aaKnown RBP12.72□□□□□ -0.37
CLN3-256ENST00000637107 TRAV12-3A0A0B4J271 114 aa12.71□□□□□ -0.37
CLN3-256ENST00000637107 TRAV25A0A0B4J276 109 aa12.71□□□□□ -0.37
CLN3-256ENST00000637107 HSBP1L1C9JCN9 74 aa12.71□□□□□ -0.37
CLN3-256ENST00000637107 IGKV3-20P01619 116 aa12.7□□□□□ -0.38
CLN3-256ENST00000637107 TSPOP30536 169 aa12.7□□□□□ -0.38
CLN3-256ENST00000637107 DUSP14O95147 198 aaKnown RBP12.7□□□□□ -0.38
CLN3-256ENST00000637107 NXPH4O95158 308 aa12.7□□□□□ -0.38
CLN3-256ENST00000637107 CD7P09564 240 aa12.7□□□□□ -0.38
CLN3-256ENST00000637107 LGALS9BQ3B8N2 356 aa12.7□□□□□ -0.38
CLN3-256ENST00000637107 LGALS9CQ6DKI2 356 aa12.7□□□□□ -0.38
CLN3-256ENST00000637107 SPAG8Q99932 426 aaPredicted RBP12.7□□□□□ -0.38
CLN3-256ENST00000637107 NUTF2P61970 127 aaKnown RBP12.69□□□□□ -0.38
CLN3-256ENST00000637107 C14orf178Q8N769 122 aaPredicted RBP12.69□□□□□ -0.38
CLN3-256ENST00000637107 PRKDCP78527 4128 aaKnown RBP12.68□□□□□ -0.38
CLN3-256ENST00000637107 K7EIL1 84 aa12.68□□□□□ -0.38
CLN3-256ENST00000637107 FOXI2Q6ZQN5 318 aa12.68□□□□□ -0.38
CLN3-256ENST00000637107 MRPS16Q9Y3D3 137 aaKnown RBP12.68□□□□□ -0.38
CLN3-256ENST00000637107 TRAV12-2A0A075B6T6 113 aa12.68□□□□□ -0.38
CLN3-256ENST00000637107 Q8N1Y9 231 aa12.68□□□□□ -0.38
CLN3-256ENST00000637107 GOLT1BQ9Y3E0 138 aa12.68□□□□□ -0.38
CLN3-256ENST00000637107 BATFQ16520 125 aa12.67□□□□□ -0.38
CLN3-256ENST00000637107 GTSCR1Q86UQ5 136 aa12.67□□□□□ -0.38
CLN3-256ENST00000637107 RASL10AQ92737 203 aa12.67□□□□□ -0.38
CLN3-256ENST00000637107 AP1S3Q96PC3 154 aa12.67□□□□□ -0.38
CLN3-256ENST00000637107 MGPP08493 103 aa12.66□□□□□ -0.38
CLN3-256ENST00000637107 CDKN1BP46527 198 aa12.66□□□□□ -0.38
CLN3-256ENST00000637107 C18orf15Q96N68 181 aa12.66□□□□□ -0.38
CLN3-256ENST00000637107 WFDC10AQ9H1F0 79 aa12.66□□□□□ -0.38
CLN3-256ENST00000637107 LAGE3Q14657 143 aa12.66□□□□□ -0.38
CLN3-256ENST00000637107 SPINK13Q1W4C9 94 aa12.66□□□□□ -0.38
CLN3-256ENST00000637107 AMTNQ6UX39 209 aa12.66□□□□□ -0.38
CLN3-256ENST00000637107 POM121L12Q8N7R1 296 aa12.66□□□□□ -0.38
CLN3-256ENST00000637107 SMIM2Q9BVW6 85 aa12.66□□□□□ -0.38
CLN3-256ENST00000637107 KIF25-AS1Q9Y6Z4 181 aa12.66□□□□□ -0.38
CLN3-256ENST00000637107 TRAV2A0A0B4J234 112 aa12.65□□□□□ -0.38
CLN3-256ENST00000637107 TCAPO15273 167 aa12.65□□□□□ -0.38
CLN3-256ENST00000637107 C19orf73Q9NVV2 129 aa12.65□□□□□ -0.38
CLN3-256ENST00000637107 IGHV3-16A0A0C4DH30 117 aa12.64□□□□□ -0.39
CLN3-256ENST00000637107 SLC25A34Q6PIV7 304 aa12.64□□□□□ -0.39
CLN3-256ENST00000637107 C9orf85Q96MD7 179 aa12.64□□□□□ -0.39
CLN3-256ENST00000637107 TP73-AS1Q9UF72 201 aa12.64□□□□□ -0.39
CLN3-256ENST00000637107 KNCNA6PVL3 124 aa12.64□□□□□ -0.39
CLN3-256ENST00000637107 DEFB131AP59861 70 aa12.64□□□□□ -0.39
CLN3-256ENST00000637107 ODF3L2Q3SX64 289 aa12.64□□□□□ -0.39
CLN3-256ENST00000637107 RPL39LQ96EH5 51 aaKnown RBP12.64□□□□□ -0.39
CLN3-256ENST00000637107 C20orf78Q9BR46 151 aa12.64□□□□□ -0.39
CLN3-256ENST00000637107 IGHV1OR15-1A0A075B7D0 117 aa12.63□□□□□ -0.39
CLN3-256ENST00000637107 SMIM17P0DL12 118 aa12.63□□□□□ -0.39
CLN3-256ENST00000637107 LINC00315P59091 139 aa12.63□□□□□ -0.39
CLN3-256ENST00000637107 SUMO2P61956 95 aaKnown RBP12.63□□□□□ -0.39
CLN3-256ENST00000637107 DEFB121Q5J5C9 76 aa12.63□□□□□ -0.39
CLN3-256ENST00000637107 MRAPQ8TCY5 172 aa12.63□□□□□ -0.39
CLN3-256ENST00000637107 MUC4Q99102 2169 aa12.63□□□□□ -0.39
CLN3-256ENST00000637107 OR11H12B2RN74 326 aa12.62□□□□□ -0.39
CLN3-256ENST00000637107 JPT2Q9H910 190 aa12.62□□□□□ -0.39
CLN3-256ENST00000637107 A8MTW9 85 aa12.62□□□□□ -0.39
CLN3-256ENST00000637107 ZNF124Q15973 351 aa12.62□□□□□ -0.39
CLN3-256ENST00000637107 MDFICQ9P1T7 246 aa12.62□□□□□ -0.39
CLN3-256ENST00000637107 DKK2Q9UBU2 259 aa12.62□□□□□ -0.39
CLN3-256ENST00000637107 IGHV4-30-4P0DP06 118 aa12.61□□□□□ -0.39
CLN3-256ENST00000637107 ANKRD39Q53RE8 183 aa12.61□□□□□ -0.39
CLN3-256ENST00000637107 COL5A1-AS1Q5SY13 56 aa12.61□□□□□ -0.39
CLN3-256ENST00000637107 MAP6D1Q9H9H5 199 aa12.61□□□□□ -0.39
CLN3-256ENST00000637107 ATP5LO75964 103 aa12.6□□□□□ -0.39
CLN3-256ENST00000637107 PRSS1P07477 247 aa12.6□□□□□ -0.39
CLN3-256ENST00000637107 COX8AP10176 69 aa12.6□□□□□ -0.39
CLN3-256ENST00000637107 HLA-DRB4P13762 266 aa12.6□□□□□ -0.39
CLN3-256ENST00000637107 HINT1P49773 126 aaPredicted RBP12.6□□□□□ -0.39
CLN3-256ENST00000637107 STPG4Q8N801 248 aa12.6□□□□□ -0.39
CLN3-256ENST00000637107 HLA-DRB4X5D2U9 266 aa12.6□□□□□ -0.39
CLN3-256ENST00000637107 H3BMM0 161 aa12.6□□□□□ -0.39
CLN3-256ENST00000637107 PPP1R17O96001 155 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms