RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ZNF876PQ49A33 203 aa13.31□□□□□ -0.28
CLN3-254ENST00000637050 PIK3CD-AS1Q5SR53 167 aa13.31□□□□□ -0.28
CLN3-254ENST00000637050 C14orf178Q8N769 122 aaPredicted RBP13.31□□□□□ -0.28
CLN3-254ENST00000637050 DPH3P1Q9H4G8 78 aa13.31□□□□□ -0.28
CLN3-254ENST00000637050 KIF25-AS1Q9Y6Z4 181 aa13.31□□□□□ -0.28
CLN3-254ENST00000637050 OR10J3Q5JRS4 329 aa13.3□□□□□ -0.28
CLN3-254ENST00000637050 JPT2Q9H910 190 aa13.3□□□□□ -0.28
CLN3-254ENST00000637050 PKD1L1Q8TDX9 2849 aa13.29□□□□□ -0.28
CLN3-254ENST00000637050 D6R8Y8 96 aa13.29□□□□□ -0.28
CLN3-254ENST00000637050 RRN3P1Q2M238 152 aa13.29□□□□□ -0.28
CLN3-254ENST00000637050 C18orf32Q8TCD1 76 aa13.29□□□□□ -0.28
CLN3-254ENST00000637050 C16orf74Q96GX8 76 aa13.29□□□□□ -0.28
CLN3-254ENST00000637050 ANK2Q01484 3957 aa13.29□□□□□ -0.28
CLN3-254ENST00000637050 PPBPP02775 128 aa13.28□□□□□ -0.28
CLN3-254ENST00000637050 PYY3Q5JQD4 70 aa13.28□□□□□ -0.28
CLN3-254ENST00000637050 ORMDL3Q8N138 153 aa13.28□□□□□ -0.28
CLN3-254ENST00000637050 PLAC8L1A1L4L8 177 aa13.28□□□□□ -0.28
CLN3-254ENST00000637050 CKS2P33552 79 aa13.28□□□□□ -0.28
CLN3-254ENST00000637050 LINC00315P59091 139 aa13.28□□□□□ -0.28
CLN3-254ENST00000637050 POM121L12Q8N7R1 296 aa13.28□□□□□ -0.28
CLN3-254ENST00000637050 PRELID3AQ96N28 172 aa13.27□□□□□ -0.29
CLN3-254ENST00000637050 X6R8D5 127 aa13.27□□□□□ -0.29
CLN3-254ENST00000637050 CRYGDP07320 174 aa13.26□□□□□ -0.29
CLN3-254ENST00000637050 SMIM17P0DL12 118 aa13.26□□□□□ -0.29
CLN3-254ENST00000637050 DAZ2Q13117 558 aaKnown RBP13.26□□□□□ -0.29
CLN3-254ENST00000637050 RASL10AQ92737 203 aa13.26□□□□□ -0.29
CLN3-254ENST00000637050 MRAP2Q96G30 205 aa13.26□□□□□ -0.29
CLN3-254ENST00000637050 NDUFAF3Q9BU61 184 aa13.26□□□□□ -0.29
CLN3-254ENST00000637050 A0A087WWL8 130 aa13.25□□□□□ -0.29
CLN3-254ENST00000637050 SMIM9A6NGZ8 99 aa13.25□□□□□ -0.29
CLN3-254ENST00000637050 SMKR1H3BMG3 65 aa13.25□□□□□ -0.29
CLN3-254ENST00000637050 NCR2O95944 276 aa13.25□□□□□ -0.29
CLN3-254ENST00000637050 IQCJQ1A5X6 159 aa13.25□□□□□ -0.29
CLN3-254ENST00000637050 DEFB135Q30KP9 77 aa13.25□□□□□ -0.29
CLN3-254ENST00000637050 BAGE3Q86Y29 109 aa13.25□□□□□ -0.29
CLN3-254ENST00000637050 SAMD10Q9BYL1 202 aa13.25□□□□□ -0.29
CLN3-254ENST00000637050 GAS8-AS1O95177 125 aa13.24□□□□□ -0.29
CLN3-254ENST00000637050 LINC00614P0C842 121 aa13.24□□□□□ -0.29
CLN3-254ENST00000637050 LINC00310P59036 64 aa13.24□□□□□ -0.29
CLN3-254ENST00000637050 KPRPQ5T749 579 aaPredicted RBP13.24□□□□□ -0.29
CLN3-254ENST00000637050 Q6ZWC4 215 aa13.24□□□□□ -0.29
CLN3-254ENST00000637050 MRPL16Q9NX20 251 aaKnown RBP13.24□□□□□ -0.29
CLN3-254ENST00000637050 CMYA5Q8N3K9 4069 aa13.24□□□□□ -0.29
CLN3-254ENST00000637050 TRAV26-2A0A0B4J265 109 aa13.24□□□□□ -0.29
CLN3-254ENST00000637050 A8MWV9 139 aa13.24□□□□□ -0.29
CLN3-254ENST00000637050 MGPP08493 103 aa13.24□□□□□ -0.29
CLN3-254ENST00000637050 LGALS9BQ3B8N2 356 aa13.24□□□□□ -0.29
CLN3-254ENST00000637050 MRPL52Q86TS9 123 aaKnown RBP13.24□□□□□ -0.29
CLN3-254ENST00000637050 OVOL2Q9BRP0 275 aa13.24□□□□□ -0.29
CLN3-254ENST00000637050 LAMTOR2Q9Y2Q5 125 aa13.24□□□□□ -0.29
CLN3-254ENST00000637050 SERF1AO75920 110 aa13.23□□□□□ -0.29
CLN3-254ENST00000637050 NPYP01303 97 aa13.23□□□□□ -0.29
CLN3-254ENST00000637050 GAGE1Q13065 139 aa13.23□□□□□ -0.29
CLN3-254ENST00000637050 NUPR1O60356 82 aa13.22□□□□□ -0.29
CLN3-254ENST00000637050 GATA1P15976 413 aaPredicted RBP13.22□□□□□ -0.29
CLN3-254ENST00000637050 FAM74A4Q5TZK3 123 aa13.22□□□□□ -0.29
CLN3-254ENST00000637050 HIST3H2BBQ8N257 126 aa13.22□□□□□ -0.29
CLN3-254ENST00000637050 RNF183Q96D59 192 aa13.22□□□□□ -0.29
CLN3-254ENST00000637050 NOP10Q9NPE3 64 aaKnown RBP13.22□□□□□ -0.29
CLN3-254ENST00000637050 TRGV1A0A0A0MS02 117 aa13.21□□□□□ -0.29
CLN3-254ENST00000637050 TNFRSF6BO95407 300 aa13.21□□□□□ -0.29
CLN3-254ENST00000637050 ESDP10768 282 aa13.21□□□□□ -0.29
CLN3-254ENST00000637050 UFSP1Q6NVU6 142 aa13.21□□□□□ -0.29
CLN3-254ENST00000637050 NRACQ8N912 160 aa13.21□□□□□ -0.29
CLN3-254ENST00000637050 RS1O15537 224 aa13.21□□□□□ -0.3
CLN3-254ENST00000637050 C21orf62-AS1Q17RA5 79 aa13.21□□□□□ -0.3
CLN3-254ENST00000637050 CFAP126Q5VTH2 177 aa13.21□□□□□ -0.3
CLN3-254ENST00000637050 Q6ZTI0 123 aa13.21□□□□□ -0.3
CLN3-254ENST00000637050 OR11H2Q8NH07 326 aa13.21□□□□□ -0.3
CLN3-254ENST00000637050 SUMO4Q6EEV6 95 aa13.2□□□□□ -0.3
CLN3-254ENST00000637050 URB1-AS1Q96HZ7 61 aa13.2□□□□□ -0.3
CLN3-254ENST00000637050 IFITM10A6NMD0 228 aa13.19□□□□□ -0.3
CLN3-254ENST00000637050 F5H697 171 aa13.19□□□□□ -0.3
CLN3-254ENST00000637050 KRTAP21-3Q3LHN1 58 aa13.19□□□□□ -0.3
CLN3-254ENST00000637050 PDZD11Q5EBL8 140 aa13.19□□□□□ -0.3
CLN3-254ENST00000637050 NIT1Q86X76 327 aa13.19□□□□□ -0.3
CLN3-254ENST00000637050 OR10D4PQ8NGN7 298 aa13.19□□□□□ -0.3
CLN3-254ENST00000637050 ZNF56Q15929 161 aa13.18□□□□□ -0.3
CLN3-254ENST00000637050 PRSS47A8MTI9 375 aa13.18□□□□□ -0.3
CLN3-254ENST00000637050 RHODO00212 210 aa13.18□□□□□ -0.3
CLN3-254ENST00000637050 MAP1LC3AQ9H492 121 aa13.18□□□□□ -0.3
CLN3-254ENST00000637050 PPP1R17O96001 155 aa13.17□□□□□ -0.3
CLN3-254ENST00000637050 MIFP14174 115 aa13.17□□□□□ -0.3
CLN3-254ENST00000637050 ZFP2Q6ZN57 461 aa13.17□□□□□ -0.3
CLN3-254ENST00000637050 CHCHD1Q96BP2 118 aaKnown RBP13.17□□□□□ -0.3
CLN3-254ENST00000637050 TP53TG1Q9Y2A0 90 aa13.17□□□□□ -0.3
CLN3-254ENST00000637050 LOC389332A0A1B0GUA5 103 aa13.16□□□□□ -0.3
CLN3-254ENST00000637050 M0QY20 66 aa13.16□□□□□ -0.3
CLN3-254ENST00000637050 IFI27P40305 119 aaPredicted RBP13.16□□□□□ -0.3
CLN3-254ENST00000637050 EMP1P54849 157 aa13.16□□□□□ -0.3
CLN3-254ENST00000637050 RNASEKQ6P5S7 137 aaKnown RBP13.16□□□□□ -0.3
CLN3-254ENST00000637050 PRSS3P2Q8NHM4 247 aa13.16□□□□□ -0.3
CLN3-254ENST00000637050 RPL39LQ96EH5 51 aaKnown RBP13.16□□□□□ -0.3
CLN3-254ENST00000637050 EDA2RQ9HAV5 297 aa13.16□□□□□ -0.3
CLN3-254ENST00000637050 IGHV3-73A0A0B4J1V6 119 aa13.15□□□□□ -0.3
CLN3-254ENST00000637050 TRAV4A0A0B4J268 109 aa13.15□□□□□ -0.3
CLN3-254ENST00000637050 K7EIL1 84 aa13.15□□□□□ -0.3
CLN3-254ENST00000637050 PRB2P02812 416 aaPredicted RBP13.15□□□□□ -0.3
CLN3-254ENST00000637050 LINC00612Q8N6U2 182 aa13.15□□□□□ -0.3
CLN3-254ENST00000637050 Q8NAQ8 132 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms