RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 NEGR1Q7Z3B1 354 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 DLX4Q92988 240 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-214ENST00000637038 TOMM6Q96B49 74 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 NAA38Q9BRA0 125 aaKnown RBP3.05□□□□□ -1.92
SCN1A-214ENST00000637038 PPDPFQ9H3Y8 114 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 MSRB1Q9NZV6 116 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV3OR16-13A0A075B7E8 117 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV3-74A0A0B4J1X5 117 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 CENPVL3A0A0U1RRI6 287 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 PRAC2D3DTV9 90 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 VCYO14598 125 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 LGALS3P17931 250 aaKnown RBP3.04□□□□□ -1.92
SCN1A-214ENST00000637038 C11orf71Q6IPW1 123 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 C2orf66Q6UXQ4 117 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 FOXI2Q6ZQN5 318 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 RP1L1Q8IWN7 2480 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV3-49A0A0A0MS15 119 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 IGKV3D-20A0A0C4DH25 116 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 A0A1B0GWB2 263 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 E9PLD3 99 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 SCGB1C2P0DMR2 95 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 RNASE4P34096 147 aaKnown RBP3.04□□□□□ -1.92
SCN1A-214ENST00000637038 CD300EQ496F6 205 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-214ENST00000637038 KLK15Q9H2R5 256 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 MALRD1Q5VYJ5 2156 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 TRBV20-1A0A075B6N2 111 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 FAM229AH3BQW9 127 aa3.04□□□□□ -1.92
SCN1A-214ENST00000637038 ARFGEF3Q5TH69 2177 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 LY6HO94772 140 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 PRB4P10163 310 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-214ENST00000637038 GATA1P15976 413 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-214ENST00000637038 LORP23490 312 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-214ENST00000637038 SNRPD3P62318 126 aaKnown RBP3.03□□□□□ -1.92
SCN1A-214ENST00000637038 MRPL23Q16540 153 aaKnown RBP3.03□□□□□ -1.92
SCN1A-214ENST00000637038 C5orf56Q8N8D9 126 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 NRACQ8N912 160 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 ATP6V0E2Q8NHE4 81 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 CCDC140Q96MF4 163 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 C1orf43Q9BWL3 253 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 HHLA3Q9XRX5 114 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 U3KQE9 123 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 LOC107984156A0A0G2JMH3 177 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 DUSP14O95147 198 aaKnown RBP3.03□□□□□ -1.92
SCN1A-214ENST00000637038 APOMO95445 188 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 PMVKQ15126 192 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 ARL17AQ8IVW1 177 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 C14orf178Q8N769 122 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-214ENST00000637038 PRADC1Q9BSG0 188 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 IGLV2-18A0A075B6J9 118 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 TRAV8-2A0A0B4J237 113 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV7-4-1A0A0J9YVY3 117 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 TMEM262E9PQX1 116 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 G3V318 75 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV1-69P01742 117 aa3.03□□□□□ -1.92
SCN1A-214ENST00000637038 CRIP2P52943 208 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-214ENST00000637038 DAZ1Q9NQZ3 744 aaKnown RBP3.03□□□□□ -1.92
SCN1A-214ENST00000637038 IGKV2D-26A0A0A0MRZ7 120 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 TRAV26-2A0A0B4J265 109 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 K7ERJ3 54 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 IGHG4P01861 327 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 SEC61GP60059 68 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 RHOHQ15669 191 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 ANXA2RQ3ZCQ2 193 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 PLEKHB2Q96CS7 222 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 TRGV11A0A075B6L2 103 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-214ENST00000637038 TEX48A0A1B0GUV7 120 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 A0A1W2PRX2 142 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 GAGE12HA6NDE8 117 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 PRSS29PA6NIE9 313 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 ZFP36P26651 326 aaKnown RBP3.02□□□□□ -1.93
SCN1A-214ENST00000637038 TMEM170BQ5T4T1 132 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 NEXN-AS1Q8NBZ9 246 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 TIMM17AQ99595 171 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 CLPSL1A2RUU4 121 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 A8MWV9 139 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 PSMB2P49721 201 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 KRTAP10-9P60411 292 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 ZNF56Q15929 161 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 Q1RN00 199 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-214ENST00000637038 RHPN1-AS1Q9BWJ2 59 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 C19orf84I3L1E1 186 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 K7EMT4 169 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 EIF4EBP3O60516 100 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-214ENST00000637038 CD7P09564 240 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 TRPT1Q86TN4 253 aaKnown RBP3.02□□□□□ -1.93
SCN1A-214ENST00000637038 PPDPFLQ8WWR9 84 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 BAALCQ8WXS3 180 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 ODF3Q96PU9 254 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 BPESC1Q9GZL8 116 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 TP53TG1Q9Y2A0 90 aa3.02□□□□□ -1.93
SCN1A-214ENST00000637038 IGF1P05019 195 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 LGALS1P09382 135 aaKnown RBP3.01□□□□□ -1.93
SCN1A-214ENST00000637038 SMAGPQ0VAQ4 97 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 COPS9Q8WXC6 57 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 RASL10AQ92737 203 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 C1QTNF4Q9BXJ3 329 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 SPANXB1Q9NS25 103 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-214ENST00000637038 C11orf21Q9P2W6 132 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms