RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ICOSQ9Y6W8 199 aa13.34□□□□□ -0.27
SQSTM1-216ENST00000626660 FAM231BA6NCW3 169 aa13.33□□□□□ -0.28
SQSTM1-216ENST00000626660 P0DMU3 169 aa13.33□□□□□ -0.28
SQSTM1-216ENST00000626660 FAM231AP0DMU4 169 aa13.33□□□□□ -0.28
SQSTM1-216ENST00000626660 FAM231CP0DMU5 169 aa13.33□□□□□ -0.28
SQSTM1-216ENST00000626660 RHOHQ15669 191 aa13.33□□□□□ -0.28
SQSTM1-216ENST00000626660 LGALS9CQ6DKI2 356 aa13.33□□□□□ -0.28
SQSTM1-216ENST00000626660 UFSP1Q6NVU6 142 aa13.33□□□□□ -0.28
SQSTM1-216ENST00000626660 GTSF1Q8WW33 167 aa13.33□□□□□ -0.28
SQSTM1-216ENST00000626660 LINC00476Q8WZB0 136 aa13.33□□□□□ -0.28
SQSTM1-216ENST00000626660 BORCS7Q96B45 105 aa13.33□□□□□ -0.28
SQSTM1-216ENST00000626660 PRADC1Q9BSG0 188 aa13.33□□□□□ -0.28
SQSTM1-216ENST00000626660 LCE6AA0A183 80 aa13.32□□□□□ -0.28
SQSTM1-216ENST00000626660 TRBV6-4A0A1B0GX49 114 aa13.32□□□□□ -0.28
SQSTM1-216ENST00000626660 LY6G6CO95867 125 aa13.32□□□□□ -0.28
SQSTM1-216ENST00000626660 CRYGDP07320 174 aa13.32□□□□□ -0.28
SQSTM1-216ENST00000626660 TRGC1P0CF51 173 aa13.32□□□□□ -0.28
SQSTM1-216ENST00000626660 GYPEP15421 78 aa13.32□□□□□ -0.28
SQSTM1-216ENST00000626660 MRPL23Q16540 153 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-216ENST00000626660 PGLYRP4Q96LB8 373 aa13.32□□□□□ -0.28
SQSTM1-216ENST00000626660 HIGD1CA8MV81 97 aa13.31□□□□□ -0.28
SQSTM1-216ENST00000626660 PPP1R2P9O14990 202 aa13.31□□□□□ -0.28
SQSTM1-216ENST00000626660 NTF3P20783 257 aa13.31□□□□□ -0.28
SQSTM1-216ENST00000626660 FOXA3P55318 350 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-216ENST00000626660 TWIST1Q15672 202 aa13.31□□□□□ -0.28
SQSTM1-216ENST00000626660 UBE2DNLQ8IWF7 75 aa13.31□□□□□ -0.28
SQSTM1-216ENST00000626660 C14orf178Q8N769 122 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-216ENST00000626660 SLC25A29Q8N8R3 303 aa13.31□□□□□ -0.28
SQSTM1-216ENST00000626660 SEC11CQ9BY50 192 aa13.31□□□□□ -0.28
SQSTM1-216ENST00000626660 CNFNQ9BYD5 112 aa13.31□□□□□ -0.28
SQSTM1-216ENST00000626660 PLECQ15149 4684 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-216ENST00000626660 A0A096LPF7 62 aa13.3□□□□□ -0.28
SQSTM1-216ENST00000626660 K7EQD1 137 aa13.3□□□□□ -0.28
SQSTM1-216ENST00000626660 MT-ND4LP03901 98 aa13.3□□□□□ -0.28
SQSTM1-216ENST00000626660 ZNF56Q15929 161 aa13.3□□□□□ -0.28
SQSTM1-216ENST00000626660 MSRB1Q9NZV6 116 aa13.3□□□□□ -0.28
SQSTM1-216ENST00000626660 ADCYAP1P18509 176 aa13.29□□□□□ -0.28
SQSTM1-216ENST00000626660 SRIP30626 198 aa13.29□□□□□ -0.28
SQSTM1-216ENST00000626660 SMIM15Q7Z3B0 74 aa13.29□□□□□ -0.28
SQSTM1-216ENST00000626660 A0A1B0GUT8 65 aa13.28□□□□□ -0.28
SQSTM1-216ENST00000626660 F5H697 171 aa13.28□□□□□ -0.28
SQSTM1-216ENST00000626660 CCL18P55774 89 aa13.28□□□□□ -0.28
SQSTM1-216ENST00000626660 RAB4BP61018 213 aa13.28□□□□□ -0.28
SQSTM1-216ENST00000626660 Q6ZSN1 163 aa13.28□□□□□ -0.28
SQSTM1-216ENST00000626660 SH2D6Q7Z4S9 175 aa13.28□□□□□ -0.28
SQSTM1-216ENST00000626660 NAT8BQ9UHF3 227 aa13.28□□□□□ -0.28
SQSTM1-216ENST00000626660 ALMS1Q8TCU4 4167 aa13.27□□□□□ -0.28
SQSTM1-216ENST00000626660 RNF212Q495C1 297 aa13.27□□□□□ -0.29
SQSTM1-216ENST00000626660 ANAPC16Q96DE5 110 aa13.27□□□□□ -0.29
SQSTM1-216ENST00000626660 LOC100131303A0A0U1RQF7 123 aa13.26□□□□□ -0.29
SQSTM1-216ENST00000626660 SMIM27A0A1W2PRY6 76 aa13.26□□□□□ -0.29
SQSTM1-216ENST00000626660 MGPP08493 103 aa13.26□□□□□ -0.29
SQSTM1-216ENST00000626660 EVI2AP22794 236 aa13.26□□□□□ -0.29
SQSTM1-216ENST00000626660 NEGR1Q7Z3B1 354 aa13.26□□□□□ -0.29
SQSTM1-216ENST00000626660 NUP35Q8NFH5 326 aa13.26□□□□□ -0.29
SQSTM1-216ENST00000626660 DPH3P1Q9H4G8 78 aa13.26□□□□□ -0.29
SQSTM1-216ENST00000626660 KIF25-AS1Q9Y6Z4 181 aa13.26□□□□□ -0.29
SQSTM1-216ENST00000626660 RIGQ13278 110 aa13.25□□□□□ -0.29
SQSTM1-216ENST00000626660 RYR2Q92736 4967 aa13.25□□□□□ -0.29
SQSTM1-216ENST00000626660 TRBV10-1A0A0K0K1A3 114 aa13.24□□□□□ -0.29
SQSTM1-216ENST00000626660 FAM3BP58499 235 aaPredicted RBP13.24□□□□□ -0.29
SQSTM1-216ENST00000626660 GAGE12JA6NER3 117 aa13.23□□□□□ -0.29
SQSTM1-216ENST00000626660 GAGE1Q13065 139 aa13.23□□□□□ -0.29
SQSTM1-216ENST00000626660 GAGE4Q13068 117 aa13.23□□□□□ -0.29
SQSTM1-216ENST00000626660 GAGE5Q13069 117 aa13.23□□□□□ -0.29
SQSTM1-216ENST00000626660 ESRGQ1W209 222 aa13.23□□□□□ -0.29
SQSTM1-216ENST00000626660 GAGE13Q4V321 117 aa13.23□□□□□ -0.29
SQSTM1-216ENST00000626660 CARHSP1Q9Y2V2 147 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-216ENST00000626660 H7C1H1 209 aa13.22□□□□□ -0.29
SQSTM1-216ENST00000626660 LINC00315P59091 139 aa13.22□□□□□ -0.29
SQSTM1-216ENST00000626660 RPL36AP83881 106 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-216ENST00000626660 C10orf91Q5T1B1 145 aa13.22□□□□□ -0.29
SQSTM1-216ENST00000626660 RPL36ALQ969Q0 106 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-216ENST00000626660 LINC00588Q9Y4M8 146 aa13.22□□□□□ -0.29
SQSTM1-216ENST00000626660 NDUFA5Q16718 116 aa13.21□□□□□ -0.29
SQSTM1-216ENST00000626660 ATP6V0E2Q8NHE4 81 aa13.21□□□□□ -0.29
SQSTM1-216ENST00000626660 EPPK1P58107 5090 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-216ENST00000626660 A0A1B0GW15 77 aa13.2□□□□□ -0.3
SQSTM1-216ENST00000626660 LYPD5Q6UWN5 251 aa13.2□□□□□ -0.3
SQSTM1-216ENST00000626660 CTDSP1Q9GZU7 261 aa13.2□□□□□ -0.3
SQSTM1-216ENST00000626660 MRPS16Q9Y3D3 137 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-216ENST00000626660 DNAH1Q9P2D7 4330 aa13.2□□□□□ -0.3
SQSTM1-216ENST00000626660 BIRC6Q9NR09 4857 aa13.19□□□□□ -0.3
SQSTM1-216ENST00000626660 SUMO4Q6EEV6 95 aa13.19□□□□□ -0.3
SQSTM1-216ENST00000626660 ZNRF2Q8NHG8 242 aa13.19□□□□□ -0.3
SQSTM1-216ENST00000626660 TMEM191AQ9H0A3 160 aa13.19□□□□□ -0.3
SQSTM1-216ENST00000626660 TRBV7-3A0A075B6L6 115 aa13.18□□□□□ -0.3
SQSTM1-216ENST00000626660 S100A8P05109 93 aa13.18□□□□□ -0.3
SQSTM1-216ENST00000626660 TIRAPP58753 221 aa13.18□□□□□ -0.3
SQSTM1-216ENST00000626660 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-216ENST00000626660 Q9UF83 564 aa13.18□□□□□ -0.3
SQSTM1-216ENST00000626660 LYSTQ99698 3801 aa13.18□□□□□ -0.3
SQSTM1-216ENST00000626660 M0QY20 66 aa13.17□□□□□ -0.3
SQSTM1-216ENST00000626660 LINC00694P0DN24 101 aa13.17□□□□□ -0.3
SQSTM1-216ENST00000626660 MRPL54Q6P161 138 aaKnown RBP13.17□□□□□ -0.3
SQSTM1-216ENST00000626660 RASL11AQ6T310 242 aa13.17□□□□□ -0.3
SQSTM1-216ENST00000626660 NEXN-AS1Q8NBZ9 246 aa13.17□□□□□ -0.3
SQSTM1-216ENST00000626660 GTSF1LQ9H1H1 148 aa13.17□□□□□ -0.3
SQSTM1-216ENST00000626660 APOC3P02656 99 aa13.16□□□□□ -0.3
SQSTM1-216ENST00000626660 CAMPP49913 170 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms