RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 HECTD1Q9ULT8 2610 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 DCHS2Q6V1P9 2916 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 IGLV4-69A0A075B6H9 119 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 ANXA2RQ3ZCQ2 193 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 LINC01620Q4KN68 170 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 C9orf47Q6ZRZ4 202 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 C15orf53Q8NAA6 179 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 ABCA4P78363 2273 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 LGALS3P17931 250 aaKnown RBP8.22□□□□□ -1.09
UPF3A-212ENST00000619079 RNF182Q8N6D2 247 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 ODF3Q96PU9 254 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 LENEPQ9Y5L5 61 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 TRBV10-2A0A0K0K1G8 114 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 FAM240AA0A1B0GVK7 77 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 H3BMM0 161 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 BUB3O43684 328 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 CRYGDP07320 174 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 MEIG1Q5JSS6 88 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 Q6ZS46 218 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 UBE2WQ96B02 151 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 UBTD1Q9HAC8 227 aa8.22□□□□□ -1.09
UPF3A-212ENST00000619079 CELSR2Q9HCU4 2923 aa8.21□□□□□ -1.09
UPF3A-212ENST00000619079 TRAV2A0A0B4J234 112 aa8.21□□□□□ -1.09
UPF3A-212ENST00000619079 A4D1N5 150 aa8.21□□□□□ -1.09
UPF3A-212ENST00000619079 J3QQQ9 107 aa8.21□□□□□ -1.09
UPF3A-212ENST00000619079 MED14OSP0DP75 135 aa8.21□□□□□ -1.09
UPF3A-212ENST00000619079 TRPT1Q86TN4 253 aaKnown RBP8.21□□□□□ -1.09
UPF3A-212ENST00000619079 TMEM263Q8WUH6 116 aaKnown RBP8.21□□□□□ -1.09
UPF3A-212ENST00000619079 SPANXDQ9BXN6 97 aa8.21□□□□□ -1.09
UPF3A-212ENST00000619079 DYNLRB1Q9NP97 96 aa8.21□□□□□ -1.09
UPF3A-212ENST00000619079 ROS1P08922 2347 aa8.21□□□□□ -1.1
UPF3A-212ENST00000619079 BAHCC1Q9P281 2608 aa8.21□□□□□ -1.1
UPF3A-212ENST00000619079 CRIP2P52943 208 aaPredicted RBP8.21□□□□□ -1.1
UPF3A-212ENST00000619079 DLX1P56177 255 aa8.21□□□□□ -1.1
UPF3A-212ENST00000619079 RPL39LQ96EH5 51 aaKnown RBP8.21□□□□□ -1.1
UPF3A-212ENST00000619079 TIMM17AQ99595 171 aa8.21□□□□□ -1.1
UPF3A-212ENST00000619079 DPM3Q9P2X0 92 aa8.21□□□□□ -1.1
UPF3A-212ENST00000619079 CENPEQ02224 2701 aa8.21□□□□□ -1.1
UPF3A-212ENST00000619079 LGALS9O00182 355 aa8.2□□□□□ -1.1
UPF3A-212ENST00000619079 DUSP14O95147 198 aaKnown RBP8.2□□□□□ -1.1
UPF3A-212ENST00000619079 IGHV3-23P01764 117 aa8.2□□□□□ -1.1
UPF3A-212ENST00000619079 Q1RN00 199 aa8.2□□□□□ -1.1
UPF3A-212ENST00000619079 TMEM170BQ5T4T1 132 aa8.2□□□□□ -1.1
UPF3A-212ENST00000619079 TRBV30A0A0K0K1B3 111 aa8.2□□□□□ -1.1
UPF3A-212ENST00000619079 IGIPA6NJ69 53 aa8.2□□□□□ -1.1
UPF3A-212ENST00000619079 S100A4P26447 101 aaKnown RBP8.2□□□□□ -1.1
UPF3A-212ENST00000619079 CSMD2Q7Z408 3487 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 RNF223E7ERA6 249 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 MGPP08493 103 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 TSPEAR-AS2P59090 65 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 PRB3Q04118 309 aaPredicted RBP8.19□□□□□ -1.1
UPF3A-212ENST00000619079 HES1Q14469 280 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 Q6ZQT7 251 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 AMELXQ99217 191 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 TP53TG1Q9Y2A0 90 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 PHLDA3Q9Y5J5 127 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 TEX49A0A1B0GTD5 131 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 A0A1W2PPR1 153 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 E7EQL1 145 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 H3BT86 120 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 C14orf178Q8N769 122 aaPredicted RBP8.19□□□□□ -1.1
UPF3A-212ENST00000619079 ZFAND3Q9H8U3 227 aa8.19□□□□□ -1.1
UPF3A-212ENST00000619079 LRBAP50851 2863 aa8.18□□□□□ -1.1
UPF3A-212ENST00000619079 TRAV21A0A0B4J279 112 aa8.18□□□□□ -1.1
UPF3A-212ENST00000619079 ZNF876PQ49A33 203 aa8.18□□□□□ -1.1
UPF3A-212ENST00000619079 M0R2P5 195 aa8.18□□□□□ -1.1
UPF3A-212ENST00000619079 TSHBP01222 138 aa8.18□□□□□ -1.1
UPF3A-212ENST00000619079 FLNBO75369 2602 aaKnown RBP8.17□□□□□ -1.1
UPF3A-212ENST00000619079 AKAP6Q13023 2319 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 TRBV7-7A0A0K0K1E9 115 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 H7C2G1 150 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 LEPROTO15243 131 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 C2orf82Q6UX34 121 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 POM121L12Q8N7R1 296 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 NRGNQ92686 78 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 TACC2O95359 2948 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 IGHV4OR15-8A0A075B7B6 117 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 IGHV3OR16-8A0A075B7F1 116 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 A0A087WW49 117 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 A0A0J9YX75 114 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 COX6CP09669 75 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 NDPQ00604 133 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 METTL26Q96S19 204 aa8.17□□□□□ -1.1
UPF3A-212ENST00000619079 FBN2P35556 2912 aa8.16□□□□□ -1.1
UPF3A-212ENST00000619079 SDHAF1A6NFY7 115 aa8.16□□□□□ -1.1
UPF3A-212ENST00000619079 VCYO14598 125 aa8.16□□□□□ -1.1
UPF3A-212ENST00000619079 IGHV4-39P01824 125 aa8.16□□□□□ -1.1
UPF3A-212ENST00000619079 EMP1P54849 157 aa8.16□□□□□ -1.1
UPF3A-212ENST00000619079 KRTAP10-9P60411 292 aa8.16□□□□□ -1.1
UPF3A-212ENST00000619079 GPHB5Q86YW7 130 aa8.16□□□□□ -1.1
UPF3A-212ENST00000619079 TMEM101Q96IK0 257 aa8.16□□□□□ -1.1
UPF3A-212ENST00000619079 LINC00477Q96M19 166 aa8.16□□□□□ -1.1
UPF3A-212ENST00000619079 CCL19Q99731 98 aa8.16□□□□□ -1.1
UPF3A-212ENST00000619079 YAE1D1Q9NRH1 226 aa8.16□□□□□ -1.1
UPF3A-212ENST00000619079 HRNRQ86YZ3 2850 aaPredicted RBP8.16□□□□□ -1.1
UPF3A-212ENST00000619079 IGHV3-35A0A0C4DH35 117 aa8.15□□□□□ -1.1
UPF3A-212ENST00000619079 BRI3O95415 125 aa8.15□□□□□ -1.1
UPF3A-212ENST00000619079 C9orf139Q6ZV77 190 aa8.15□□□□□ -1.1
UPF3A-212ENST00000619079 MUSTN1Q8IVN3 82 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms