RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 MRPL53Q96EL3 112 aaKnown RBP9.58□□□□□ -0.88
LIG1-221ENST00000613670 CCDC168Q8NDH2 2452 aa9.58□□□□□ -0.88
LIG1-221ENST00000613670 DCHS1Q96JQ0 3298 aa9.58□□□□□ -0.88
LIG1-221ENST00000613670 NDUFA4O00483 81 aa9.58□□□□□ -0.88
LIG1-221ENST00000613670 GAGE2BQ13066 116 aa9.58□□□□□ -0.88
LIG1-221ENST00000613670 GAGE2EQ4V326 116 aa9.58□□□□□ -0.88
LIG1-221ENST00000613670 SUMO4Q6EEV6 95 aa9.58□□□□□ -0.88
LIG1-221ENST00000613670 DUX3Q96PT4 197 aa9.58□□□□□ -0.88
LIG1-221ENST00000613670 GAGE2DQ9UEU5 116 aa9.58□□□□□ -0.88
LIG1-221ENST00000613670 UCNP55089 124 aa9.58□□□□□ -0.88
LIG1-221ENST00000613670 TMEM95Q3KNT9 176 aa9.58□□□□□ -0.88
LIG1-221ENST00000613670 CNFNQ9BYD5 112 aa9.57□□□□□ -0.88
LIG1-221ENST00000613670 A4D1N5 150 aa9.57□□□□□ -0.88
LIG1-221ENST00000613670 SLC25A20O43772 301 aa9.57□□□□□ -0.88
LIG1-221ENST00000613670 C5orf56Q8N8D9 126 aa9.57□□□□□ -0.88
LIG1-221ENST00000613670 NEXN-AS1Q8NBZ9 246 aa9.57□□□□□ -0.88
LIG1-221ENST00000613670 SIRPDQ9H106 197 aa9.57□□□□□ -0.88
LIG1-221ENST00000613670 TMEM262E9PQX1 116 aa9.57□□□□□ -0.88
LIG1-221ENST00000613670 TSPAN13O95857 204 aa9.57□□□□□ -0.88
LIG1-221ENST00000613670 ADORA2A-AS1P86434 159 aa9.57□□□□□ -0.88
LIG1-221ENST00000613670 TRBV20-1A0A075B6N2 111 aa9.56□□□□□ -0.88
LIG1-221ENST00000613670 USMG5Q96IX5 58 aa9.56□□□□□ -0.88
LIG1-221ENST00000613670 CCL19Q99731 98 aa9.56□□□□□ -0.88
LIG1-221ENST00000613670 LENEPQ9Y5L5 61 aa9.56□□□□□ -0.88
LIG1-221ENST00000613670 IGHV1-69DA0A0B4J2H0 117 aa9.56□□□□□ -0.88
LIG1-221ENST00000613670 IGKV3OR2-268A0A0C4DH90 116 aa9.56□□□□□ -0.88
LIG1-221ENST00000613670 IGHV1-69P01742 117 aa9.56□□□□□ -0.88
LIG1-221ENST00000613670 SYNJ2BPP57105 145 aa9.56□□□□□ -0.88
LIG1-221ENST00000613670 ZNF625Q96I27 306 aaPredicted RBP9.56□□□□□ -0.88
LIG1-221ENST00000613670 A0A0J9YXV3 536 aa9.56□□□□□ -0.88
LIG1-221ENST00000613670 CLPSL1A2RUU4 121 aa9.56□□□□□ -0.88
LIG1-221ENST00000613670 PHLDA1Q8WV24 401 aaPredicted RBP9.56□□□□□ -0.88
LIG1-221ENST00000613670 ZMAT4Q9H898 229 aa9.56□□□□□ -0.88
LIG1-221ENST00000613670 TRAV26-1A0A087WT03 109 aa9.55□□□□□ -0.88
LIG1-221ENST00000613670 MEIG1Q5JSS6 88 aa9.55□□□□□ -0.88
LIG1-221ENST00000613670 NTN5Q8WTR8 489 aaPredicted RBP9.55□□□□□ -0.88
LIG1-221ENST00000613670 ZFAND2AQ8N6M9 145 aa9.55□□□□□ -0.88
LIG1-221ENST00000613670 TMEM141Q96I45 108 aa9.55□□□□□ -0.88
LIG1-221ENST00000613670 DYNLRB2Q8TF09 96 aa9.55□□□□□ -0.88
LIG1-221ENST00000613670 TIMM21Q9BVV7 248 aa9.55□□□□□ -0.88
LIG1-221ENST00000613670 MT-ATP8P03928 68 aa9.54□□□□□ -0.88
LIG1-221ENST00000613670 C2orf82Q6UX34 121 aa9.54□□□□□ -0.88
LIG1-221ENST00000613670 Q8N6K4 173 aa9.54□□□□□ -0.88
LIG1-221ENST00000613670 AJUBAQ96IF1 538 aa9.54□□□□□ -0.88
LIG1-221ENST00000613670 TRBV7-3A0A075B6L6 115 aa9.54□□□□□ -0.88
LIG1-221ENST00000613670 TRAV8-4A0A0B4J246 113 aa9.54□□□□□ -0.88
LIG1-221ENST00000613670 TCL1BO95988 128 aa9.54□□□□□ -0.88
LIG1-221ENST00000613670 TRPT1Q86TN4 253 aaKnown RBP9.54□□□□□ -0.88
LIG1-221ENST00000613670 TEN1Q86WV5 123 aa9.54□□□□□ -0.88
LIG1-221ENST00000613670 C10orf126Q8N4M7 172 aa9.54□□□□□ -0.88
LIG1-221ENST00000613670 PIFOQ8TCI5 191 aa9.54□□□□□ -0.88
LIG1-221ENST00000613670 IGLV2-18A0A075B6J9 118 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 IGHV4-38-2P0DP08 117 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 NDUFA11Q86Y39 141 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 ANKRD29Q8N6D5 301 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.53□□□□□ -0.88
LIG1-221ENST00000613670 M0R2P5 195 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 MDFICQ9P1T7 246 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 IGHV3-38A0A0C4DH36 116 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 CFC1BP0CG36 223 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 CFC1P0CG37 223 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 SCGB1A1P11684 91 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 CIRBPQ14011 172 aaKnown RBP9.53□□□□□ -0.88
LIG1-221ENST00000613670 EBI3Q14213 229 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 ITLN2Q8WWU7 325 aaPredicted RBP9.53□□□□□ -0.88
LIG1-221ENST00000613670 LINC01587Q99440 93 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 POLQO75417 2590 aa9.53□□□□□ -0.88
LIG1-221ENST00000613670 ATXN8Q156A1 80 aa9.52□□□□□ -0.88
LIG1-221ENST00000613670 MUSTN1Q8IVN3 82 aa9.52□□□□□ -0.88
LIG1-221ENST00000613670 PIEZO1Q92508 2521 aa9.52□□□□□ -0.88
LIG1-221ENST00000613670 IGHV3-16A0A0C4DH30 117 aa9.52□□□□□ -0.89
LIG1-221ENST00000613670 Q6ZS46 218 aa9.52□□□□□ -0.89
LIG1-221ENST00000613670 COX8CQ7Z4L0 72 aa9.52□□□□□ -0.89
LIG1-221ENST00000613670 MAPK1IP1LQ8NDC0 245 aa9.52□□□□□ -0.89
LIG1-221ENST00000613670 IGHV1OR15-1A0A075B7D0 117 aa9.51□□□□□ -0.89
LIG1-221ENST00000613670 TRAV8-3A0A0A6YYJ7 113 aa9.51□□□□□ -0.89
LIG1-221ENST00000613670 ZFHX4Q86UP3 3567 aa9.51□□□□□ -0.89
LIG1-221ENST00000613670 AKAP13Q12802 2813 aa9.51□□□□□ -0.89
LIG1-221ENST00000613670 A0A0J9YY99 117 aa9.51□□□□□ -0.89
LIG1-221ENST00000613670 NAV2Q8IVL1 2488 aa9.51□□□□□ -0.89
LIG1-221ENST00000613670 ATMQ13315 3056 aa9.51□□□□□ -0.89
LIG1-221ENST00000613670 MYO18BQ8IUG5 2567 aa9.51□□□□□ -0.89
LIG1-221ENST00000613670 MORN3Q6PF18 240 aaPredicted RBP9.5□□□□□ -0.89
LIG1-221ENST00000613670 IGHV4-61A0A0C4DH41 118 aa9.5□□□□□ -0.89
LIG1-221ENST00000613670 I3L3M4 83 aa9.5□□□□□ -0.89
LIG1-221ENST00000613670 GNLYP22749 145 aa9.5□□□□□ -0.89
LIG1-221ENST00000613670 Q8N1Y9 231 aa9.5□□□□□ -0.89
LIG1-221ENST00000613670 NDUFA12Q9UI09 145 aa9.5□□□□□ -0.89
LIG1-221ENST00000613670 TRGV11A0A075B6L2 103 aa9.5□□□□□ -0.89
LIG1-221ENST00000613670 RNASE3P12724 160 aaKnown RBP9.5□□□□□ -0.89
LIG1-221ENST00000613670 CRYBA4P53673 196 aa9.5□□□□□ -0.89
LIG1-221ENST00000613670 DEFB131AP59861 70 aa9.5□□□□□ -0.89
LIG1-221ENST00000613670 LMO4P61968 165 aa9.5□□□□□ -0.89
LIG1-221ENST00000613670 CEMP1Q6PRD7 247 aaPredicted RBP9.5□□□□□ -0.89
LIG1-221ENST00000613670 C11orf44Q8N8P7 122 aa9.49□□□□□ -0.89
LIG1-221ENST00000613670 TOMM7Q9P0U1 55 aa9.49□□□□□ -0.89
LIG1-221ENST00000613670 B5MCH6 92 aa9.49□□□□□ -0.89
LIG1-221ENST00000613670 FBXL19-AS1Q494R0 122 aa9.49□□□□□ -0.89
LIG1-221ENST00000613670 Q6ZUT4 128 aa9.49□□□□□ -0.89
LIG1-221ENST00000613670 CFAP126Q5VTH2 177 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms