RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TMEM147Q9BVK8 224 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 TSSK6Q9BXA6 273 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 SH3BGRL3Q9H299 93 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 LYRM2Q9NU23 88 aaPredicted RBP2.65□□□□□ -1.99
LINC00540-201ENST00000611481 ZNF492Q9P255 531 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 TMEM56-RWDD3S4R434 201 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 A0A096LPF7 62 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 IGHV3-21A0A0B4J1V1 117 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 TRAV5A0A0B4J249 113 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 A0A0D9SG52 128 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 EFCAB10A6NFE3 127 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 C9JCJ5 164 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 GEMIN2O14893 280 aaKnown RBP2.64□□□□□ -1.99
LINC00540-201ENST00000611481 HMGB3O15347 200 aaKnown RBP2.64□□□□□ -1.99
LINC00540-201ENST00000611481 ARPC5O15511 151 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 CDRT1O95170 752 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 CXorf1O96002 111 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 GTF2A1P52655 376 aaPredicted RBP2.64□□□□□ -1.99
LINC00540-201ENST00000611481 LINC00313P59037 77 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 GNG11P61952 73 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 RBX1P62877 108 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 CCDC58Q4VC31 144 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 RPL13AP3Q6NVV1 102 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 NTM-AS1Q6ZSK4 140 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 GPR146Q96CH1 333 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 NARS2Q96I59 477 aaKnown RBP2.64□□□□□ -1.99
LINC00540-201ENST00000611481 LINC00467Q9BRT7 94 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 COMMD5Q9GZQ3 224 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 RNASE7Q9H1E1 156 aaKnown RBP2.64□□□□□ -1.99
LINC00540-201ENST00000611481 WFDC1Q9HC57 220 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 UQCC1Q9NVA1 299 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 PRNDQ9UKY0 176 aa2.64□□□□□ -1.99
LINC00540-201ENST00000611481 LOC107986453A0A1B0GWG9 222 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 IGSF23A1L1A6 192 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 MAP1LC3B2A6NCE7 125 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 E7EUB6 86 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 H3BNG1 76 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 J3QRK9 145 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 CREBL2O60519 120 aaPredicted RBP2.63□□□□□ -1.99
LINC00540-201ENST00000611481 CRYZL1O95825 349 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 NAPSAO96009 420 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 HLA-DRB4P13762 266 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 RPL27AP46776 148 aaKnown RBP2.63□□□□□ -1.99
LINC00540-201ENST00000611481 RBM11P57052 281 aaKnown RBP2.63□□□□□ -1.99
LINC00540-201ENST00000611481 SPCS2Q15005 226 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 KISS1Q15726 138 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 KLK9Q2XQG4 91 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 LUZP6Q538Z0 58 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 SAMD13Q5VXD3 122 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 WFDC10BQ8IUB3 73 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 BAP18Q8IXM2 172 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 OR10G2Q8NGC3 310 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 YIPF3Q9GZM5 350 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 MAP1LC3BQ9GZQ8 125 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 SLC35B3Q9H1N7 401 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 CMC2Q9NRP2 79 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 KCNIP2Q9NS61 270 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 KLK9Q9UKQ9 250 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 HLA-DRB4X5D2U9 266 aa2.63□□□□□ -1.99
LINC00540-201ENST00000611481 TMEM223A0PJW6 202 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 MCRIP1C9JLW8 97 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.62□□□□□ -1.99
LINC00540-201ENST00000611481 K7EP13 123 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 GSTZ1O43708 216 aaPredicted RBP2.62□□□□□ -1.99
LINC00540-201ENST00000611481 MED6O75586 246 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 GADD45GO95257 159 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 OR10J4P0C629 311 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 SAA1P0DJI8 122 aaPredicted RBP2.62□□□□□ -1.99
LINC00540-201ENST00000611481 S100A2P29034 98 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 DEFB1P60022 68 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 RPS20P60866 119 aaKnown RBP2.62□□□□□ -1.99
LINC00540-201ENST00000611481 GNG5P63218 68 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 DHRS2Q13268 280 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 Q56UQ5 140 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 TMEM128Q5BJH2 165 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 GDF5OSQ5U4N7 250 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 ZNF322Q6U7Q0 402 aaPredicted RBP2.62□□□□□ -1.99
LINC00540-201ENST00000611481 KRTAP11-1Q8IUC1 163 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 C10orf126Q8N4M7 172 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 EIF4E3Q8N5X7 224 aaKnown RBP2.62□□□□□ -1.99
LINC00540-201ENST00000611481 ZNF709Q8N972 641 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 FER1L6-AS1Q8NA97 138 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 OR52N1Q8NH53 320 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 DCANP1Q8TF63 244 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 PYURFQ96I23 114 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 PBDC1Q9BVG4 233 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 C21orf62Q9NYP8 219 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 GSKIPQ9P0R6 139 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 AK3Q9UIJ7 227 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 SSR3Q9UNL2 185 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 BAIAP2Q9UQB8 552 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 TMEM14AQ9Y6G1 99 aa2.62□□□□□ -1.99
LINC00540-201ENST00000611481 LINC00862A6NCI5 91 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 OR7C2O60412 319 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 NDUFC2O95298 119 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 SURF2Q15527 256 aaPredicted RBP2.61□□□□□ -1.99
LINC00540-201ENST00000611481 RTL8BQ17RB0 113 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 MPV17LQ2QL34 196 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 TDRG1Q3Y452 100 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 LAIR2Q6ISS4 152 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms