RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 K7EQM0 130 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 IFNA1P01562 189 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 OR10J4P0C629 311 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 RANP62826 216 aaKnown RBP4.19□□□□□ -1.74
CUX1-220ENST00000607092 ELOBQ15370 118 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 ZNF876PQ49A33 203 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 C14orf177Q52M58 125 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 ZNF506Q5JVG8 444 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 PRR9Q5T870 116 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 KCNIP4Q6PIL6 250 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 Q8TAT8 98 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 SFT2D1Q8WV19 159 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 PTH2Q96A98 100 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 FAM167A-AS1Q96KT0 104 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 CHAC1Q9BUX1 264 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 SLC25A2Q9BXI2 301 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 EIF5A2Q9GZV4 153 aaKnown RBP4.19□□□□□ -1.74
CUX1-220ENST00000607092 NAGKQ9UJ70 344 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 IGHV3-16A0A0C4DH30 117 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 SCO2A0A1W2PP80 73 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 IGLV2-8P01709 118 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 FHITP49789 147 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 FGF8P55075 233 aaPredicted RBP4.18□□□□□ -1.74
CUX1-220ENST00000607092 PIK3CD-AS1Q5SR53 167 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 ZFP2Q6ZN57 461 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 MIR17HGQ75NE6 70 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 SLC25A29Q8N8R3 303 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 OR10G7Q8NGN6 311 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 FXYD5Q96DB9 178 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 CHCHD7Q9BUK0 85 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 OTORQ9NRC9 128 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 VAX2Q9UIW0 290 aa4.18□□□□□ -1.74
CUX1-220ENST00000607092 A0A1W2PPV4 95 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 A8MWV9 139 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 B4DEV8 164 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 IGLV2-11P01706 119 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 IGHV3-30P01768 117 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 IGHV3-33P01772 117 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 SRP19P09132 144 aaKnown RBP4.17□□□□□ -1.74
CUX1-220ENST00000607092 IGHV3-30-3P0DP02 117 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 IGHV3-30-5P0DP03 117 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 CCL20P78556 96 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 HAMPP81172 84 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 GAGE13Q4V321 117 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 FAM74A3Q4VXF1 159 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 FFAR4Q5NUL3 377 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 CFAP126Q5VTH2 177 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 PQLC2Q6ZP29 291 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 NKX6-2Q9C056 277 aaPredicted RBP4.17□□□□□ -1.74
CUX1-220ENST00000607092 MANBALQ9NQG1 85 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 FAM30AQ9NZY2 134 aa4.17□□□□□ -1.74
CUX1-220ENST00000607092 A0A087WX48 190 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 MAP1LC3B2A6NCE7 125 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 C9JQL5 133 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 TMEM250H0YL14 139 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 TYMSP04818 313 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 BCL2P10415 239 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 ADCYAP1P18509 176 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 PKIAP61925 76 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 Q0VG73 95 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 PNRC1Q12796 327 aaPredicted RBP4.16□□□□□ -1.74
CUX1-220ENST00000607092 ZNF726P1Q15940 193 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 GCSAMLQ5JQS6 135 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 SCXQ7RTU7 201 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.16□□□□□ -1.74
CUX1-220ENST00000607092 MAP1LC3BQ9GZQ8 125 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 ARL2-SNX15V9GYD0 113 aa4.16□□□□□ -1.74
CUX1-220ENST00000607092 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.15□□□□□ -1.75
CUX1-220ENST00000607092 LOC100131303A0A0U1RQF7 123 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 PGPA6NDG6 321 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 RHODO00212 210 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 GNRH2O43555 120 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 CXorf1O96002 111 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 STAG3L2P0CL84 134 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 STAG3L3P0CL85 134 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 S100A4P26447 101 aaKnown RBP4.15□□□□□ -1.75
CUX1-220ENST00000607092 CDC34P49427 236 aaPredicted RBP4.15□□□□□ -1.75
CUX1-220ENST00000607092 RHEBQ15382 184 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 RNF151Q2KHN1 245 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 SAPCD1Q5SSQ6 148 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 GOLT1AQ6ZVE7 132 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 CYB561D1Q8N8Q1 229 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 SMCO4Q9NRQ5 59 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 TMEM242Q9NWH2 141 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 GNG13Q9P2W3 67 aa4.15□□□□□ -1.75
CUX1-220ENST00000607092 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.15□□□□□ -1.75
CUX1-220ENST00000607092 LRP1Q07954 4544 aaKnown RBP4.14□□□□□ -1.75
CUX1-220ENST00000607092 IGKV2D-24A0A075B6R9 120 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 A0A087WWL8 130 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 C7orf77A4D0Y5 90 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 F6UZH7 168 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 PDE6DO43924 150 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 MEF2BQ02080 365 aaPredicted RBP4.14□□□□□ -1.75
CUX1-220ENST00000607092 SMUG1Q53HV7 270 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 ATRAIDQ6UW56 229 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 Q6ZQT7 251 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 C5orf17Q8NAS9 161 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 BAALCQ8WXS3 180 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 TVP23CQ96ET8 276 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 TMEM167BQ9NRX6 74 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms