RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 NPBQ8NG41 125 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 OVOL1O14753 267 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 ATP6V0E1O15342 81 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 MYCNOSP40205 109 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 TCF15Q12870 199 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 APRG1Q8IVJ8 170 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 MOB4Q9Y3A3 225 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 NDUFA3O95167 84 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 LAGE3Q14657 143 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 LGALS9BQ3B8N2 356 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 LGALS9CQ6DKI2 356 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 FAM19A1Q7Z5A9 133 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 IGLV11-55A0A075B6I3 123 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 ELANEP08246 267 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 RNASE4P34096 147 aaKnown RBP8.07□□□□□ -1.12
LIG1-220ENST00000601091 NDPQ00604 133 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 CIRBPQ14011 172 aaKnown RBP8.07□□□□□ -1.12
LIG1-220ENST00000601091 RNF182Q8N6D2 247 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 TMEM158Q8WZ71 300 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 FAM240AA0A1B0GVK7 77 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 EGR2P11161 476 aaPredicted RBP8.07□□□□□ -1.12
LIG1-220ENST00000601091 HTN1P15515 57 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 TRBV6-1A0A0K0K1D8 114 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 ORMDL2Q53FV1 153 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 C9orf139Q6ZV77 190 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 BPESC1Q9GZL8 116 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 C7orf69Q9H7B7 122 aa8.07□□□□□ -1.12
LIG1-220ENST00000601091 SPENQ96T58 3664 aaKnown RBP8.07□□□□□ -1.12
LIG1-220ENST00000601091 G3V318 75 aa8.06□□□□□ -1.12
LIG1-220ENST00000601091 CCL24O00175 119 aa8.06□□□□□ -1.12
LIG1-220ENST00000601091 NPYP01303 97 aa8.06□□□□□ -1.12
LIG1-220ENST00000601091 LY6DQ14210 128 aa8.06□□□□□ -1.12
LIG1-220ENST00000601091 MORN3Q6PF18 240 aaPredicted RBP8.06□□□□□ -1.12
LIG1-220ENST00000601091 TTTY13Q9BZ97 58 aa8.06□□□□□ -1.12
LIG1-220ENST00000601091 WI2-2373I1.2A0A1W2PRP0 233 aa8.06□□□□□ -1.12
LIG1-220ENST00000601091 LGALS1P09382 135 aaKnown RBP8.06□□□□□ -1.12
LIG1-220ENST00000601091 Q6Q795 121 aa8.06□□□□□ -1.12
LIG1-220ENST00000601091 DOPEY2Q9Y3R5 2298 aa8.06□□□□□ -1.12
LIG1-220ENST00000601091 ARHGAP32A7KAX9 2087 aa8.06□□□□□ -1.12
LIG1-220ENST00000601091 TRAV40A0A0B4J280 105 aa8.05□□□□□ -1.12
LIG1-220ENST00000601091 HLA-DMBP28068 263 aa8.05□□□□□ -1.12
LIG1-220ENST00000601091 Q1RN00 199 aa8.05□□□□□ -1.12
LIG1-220ENST00000601091 LINC01545Q5VT33 79 aa8.05□□□□□ -1.12
LIG1-220ENST00000601091 CCL19Q99731 98 aa8.05□□□□□ -1.12
LIG1-220ENST00000601091 CTSGP08311 255 aa8.05□□□□□ -1.12
LIG1-220ENST00000601091 TMEM258P61165 79 aa8.05□□□□□ -1.12
LIG1-220ENST00000601091 FAM74A4Q5TZK3 123 aa8.05□□□□□ -1.12
LIG1-220ENST00000601091 LINC00526Q96FQ7 95 aa8.05□□□□□ -1.12
LIG1-220ENST00000601091 DEFB104AQ8WTQ1 72 aa8.05□□□□□ -1.12
LIG1-220ENST00000601091 SNRPD3P62318 126 aaKnown RBP8.04□□□□□ -1.12
LIG1-220ENST00000601091 Q5XG85 94 aa8.04□□□□□ -1.12
LIG1-220ENST00000601091 CEP295Q9C0D2 2601 aa8.04□□□□□ -1.12
LIG1-220ENST00000601091 IGKV3-20P01619 116 aa8.04□□□□□ -1.12
LIG1-220ENST00000601091 FANCD2OSQ96PS1 177 aa8.04□□□□□ -1.12
LIG1-220ENST00000601091 IGHV7-81A0A0B4J1V7 117 aa8.04□□□□□ -1.12
LIG1-220ENST00000601091 BRD3OSQ6XYD6 125 aa8.04□□□□□ -1.12
LIG1-220ENST00000601091 PCSK5Q92824 1860 aa8.04□□□□□ -1.12
LIG1-220ENST00000601091 E9PLD3 99 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 LOXL1Q08397 574 aaPredicted RBP8.03□□□□□ -1.12
LIG1-220ENST00000601091 DYNAPQ8N1N2 210 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 FAM223BA6NKX1 122 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 FAM223AQ8IWN6 122 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 NDUFS7O75251 213 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 NPC2P61916 151 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 Q8N8P6 123 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 FAM19A4Q96LR4 140 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 INAFM2P0DMQ5 153 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 FBXL19-AS1Q494R0 122 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 RUSC1-AS1Q66K80 236 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 HIGD1BQ9P298 99 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 Q9UF83 564 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 HHLA3Q9XRX5 114 aa8.03□□□□□ -1.12
LIG1-220ENST00000601091 TMEM170BQ5T4T1 132 aa8.02□□□□□ -1.13
LIG1-220ENST00000601091 LY6G5BQ8NDX9 201 aa8.02□□□□□ -1.13
LIG1-220ENST00000601091 URB1-AS1Q96HZ7 61 aa8.02□□□□□ -1.13
LIG1-220ENST00000601091 AGPAT4-IT1Q9H0P7 198 aa8.02□□□□□ -1.13
LIG1-220ENST00000601091 DPH3P1Q9H4G8 78 aa8.02□□□□□ -1.13
LIG1-220ENST00000601091 ATRXP46100 2492 aa8.02□□□□□ -1.13
LIG1-220ENST00000601091 FSTL3O95633 263 aa8.02□□□□□ -1.13
LIG1-220ENST00000601091 HOXB4P17483 251 aaPredicted RBP8.02□□□□□ -1.13
LIG1-220ENST00000601091 PLNP26678 52 aa8.02□□□□□ -1.13
LIG1-220ENST00000601091 C14orf178Q8N769 122 aaPredicted RBP8.02□□□□□ -1.13
LIG1-220ENST00000601091 USMG5Q96IX5 58 aa8.02□□□□□ -1.13
LIG1-220ENST00000601091 H3BUX3 64 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 H7C2G1 150 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 PAPPA-AS1Q5QFB9 102 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 MSRB1Q9NZV6 116 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 RBM3P98179 157 aaKnown RBP8.01□□□□□ -1.13
LIG1-220ENST00000601091 PCP2Q8IVA1 136 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 Q8N9W7 124 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 CHAC1Q9BUX1 264 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 DKK2Q9UBU2 259 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 C2CD3Q4AC94 2353 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 LY6LH3BQJ8 138 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 BUB3O43684 328 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 OXTP01178 125 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 RRN3P1Q2M238 152 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 NSUN5P1Q3KNT7 163 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 SERTAD4-AS1Q5TG53 156 aa8.01□□□□□ -1.13
LIG1-220ENST00000601091 SORL1Q92673 2214 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms