RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 UBE2WQ96B02 151 aa13.84□□□□□ -0.19
PNKP-212ENST00000599454 AQP10Q96PS8 301 aa13.84□□□□□ -0.19
PNKP-212ENST00000599454 IFNA7P01567 189 aa13.83□□□□□ -0.2
PNKP-212ENST00000599454 Q0VG73 95 aa13.83□□□□□ -0.2
PNKP-212ENST00000599454 CIRBP-AS1Q8TBR5 109 aa13.83□□□□□ -0.2
PNKP-212ENST00000599454 IGLV2-8P01709 118 aa13.82□□□□□ -0.2
PNKP-212ENST00000599454 ARMS2P0C7Q2 107 aa13.82□□□□□ -0.2
PNKP-212ENST00000599454 FAM74A4Q5TZK3 123 aa13.82□□□□□ -0.2
PNKP-212ENST00000599454 Q86TA4 180 aa13.82□□□□□ -0.2
PNKP-212ENST00000599454 NKX6-2Q9C056 277 aaPredicted RBP13.82□□□□□ -0.2
PNKP-212ENST00000599454 TRBV10-1A0A0K0K1A3 114 aa13.81□□□□□ -0.2
PNKP-212ENST00000599454 KRBOX1C9JBD0 128 aa13.81□□□□□ -0.2
PNKP-212ENST00000599454 PEX7O00628 323 aa13.81□□□□□ -0.2
PNKP-212ENST00000599454 HIST1H2BAQ96A08 127 aa13.81□□□□□ -0.2
PNKP-212ENST00000599454 SFRP2Q96HF1 295 aa13.81□□□□□ -0.2
PNKP-212ENST00000599454 DNAJC30Q96LL9 226 aa13.81□□□□□ -0.2
PNKP-212ENST00000599454 PHLDA3Q9Y5J5 127 aa13.81□□□□□ -0.2
PNKP-212ENST00000599454 RPL36AP83881 106 aaKnown RBP13.8□□□□□ -0.2
PNKP-212ENST00000599454 COX8CQ7Z4L0 72 aa13.8□□□□□ -0.2
PNKP-212ENST00000599454 RPL36ALQ969Q0 106 aaKnown RBP13.8□□□□□ -0.2
PNKP-212ENST00000599454 ZFP30Q9Y2G7 519 aa13.8□□□□□ -0.2
PNKP-212ENST00000599454 TPT1P13693 172 aaKnown RBP13.79□□□□□ -0.2
PNKP-212ENST00000599454 LRP1Q07954 4544 aaKnown RBP13.79□□□□□ -0.2
PNKP-212ENST00000599454 A0A087WWL8 130 aa13.78□□□□□ -0.2
PNKP-212ENST00000599454 CTXND1A0A1B0GTU2 59 aa13.78□□□□□ -0.2
PNKP-212ENST00000599454 M0R036 132 aa13.78□□□□□ -0.2
PNKP-212ENST00000599454 CRIP1P50238 77 aa13.78□□□□□ -0.2
PNKP-212ENST00000599454 FAM162BQ5T6X4 162 aa13.78□□□□□ -0.2
PNKP-212ENST00000599454 ZC2HC1AQ96GY0 325 aa13.78□□□□□ -0.2
PNKP-212ENST00000599454 C1orf43Q9BWL3 253 aa13.78□□□□□ -0.2
PNKP-212ENST00000599454 TRBV7-3A0A075B6L6 115 aa13.77□□□□□ -0.21
PNKP-212ENST00000599454 GRIFINA4D1Z8 144 aa13.77□□□□□ -0.21
PNKP-212ENST00000599454 SH2D1AO60880 128 aa13.77□□□□□ -0.21
PNKP-212ENST00000599454 UBE2G2P60604 165 aa13.77□□□□□ -0.21
PNKP-212ENST00000599454 UBE2D3P61077 147 aa13.77□□□□□ -0.21
PNKP-212ENST00000599454 UBE2D2P62837 147 aa13.77□□□□□ -0.21
PNKP-212ENST00000599454 ZFP82Q8N141 532 aa13.77□□□□□ -0.21
PNKP-212ENST00000599454 M0R381 172 aa13.76□□□□□ -0.21
PNKP-212ENST00000599454 ALG5Q9Y673 324 aa13.76□□□□□ -0.21
PNKP-212ENST00000599454 FAM74A7A6NL05 159 aa13.75□□□□□ -0.21
PNKP-212ENST00000599454 CRPP02741 224 aa13.75□□□□□ -0.21
PNKP-212ENST00000599454 ZNF726P1Q15940 193 aa13.75□□□□□ -0.21
PNKP-212ENST00000599454 LINC01559Q495D7 138 aa13.75□□□□□ -0.21
PNKP-212ENST00000599454 OR10G8Q8NGN5 311 aa13.75□□□□□ -0.21
PNKP-212ENST00000599454 FMC1Q96HJ9 113 aa13.75□□□□□ -0.21
PNKP-212ENST00000599454 BORCS7-ASMTA0A0B4J1R7 106 aa13.74□□□□□ -0.21
PNKP-212ENST00000599454 TMEM262E9PQX1 116 aa13.74□□□□□ -0.21
PNKP-212ENST00000599454 ZNF674Q2M3X9 581 aa13.74□□□□□ -0.21
PNKP-212ENST00000599454 INO80EQ8NBZ0 244 aaPredicted RBP13.74□□□□□ -0.21
PNKP-212ENST00000599454 FAT3Q8TDW7 4589 aa13.73□□□□□ -0.21
PNKP-212ENST00000599454 TRBV6-8A0A0A6YYG3 113 aa13.73□□□□□ -0.21
PNKP-212ENST00000599454 PKIAP61925 76 aa13.73□□□□□ -0.21
PNKP-212ENST00000599454 UBE2G1P62253 170 aa13.73□□□□□ -0.21
PNKP-212ENST00000599454 PLA2G2DQ9UNK4 145 aa13.73□□□□□ -0.21
PNKP-212ENST00000599454 HMCN2Q8NDA2 5059 aa13.72□□□□□ -0.21
PNKP-212ENST00000599454 TRBV6-1A0A0K0K1D8 114 aa13.72□□□□□ -0.21
PNKP-212ENST00000599454 RPL37AP61513 92 aaKnown RBP13.72□□□□□ -0.21
PNKP-212ENST00000599454 RPL7L1Q6DKI1 246 aaKnown RBP13.72□□□□□ -0.21
PNKP-212ENST00000599454 ENHOQ6UWT2 76 aa13.72□□□□□ -0.21
PNKP-212ENST00000599454 TCEAL7Q9BRU2 100 aa13.72□□□□□ -0.21
PNKP-212ENST00000599454 MED28Q9H204 178 aa13.72□□□□□ -0.21
PNKP-212ENST00000599454 RAB4BP61018 213 aa13.71□□□□□ -0.21
PNKP-212ENST00000599454 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.71□□□□□ -0.21
PNKP-212ENST00000599454 TMSB15BA0A087X1C1 80 aa13.7□□□□□ -0.22
PNKP-212ENST00000599454 A6NHS1 94 aa13.7□□□□□ -0.22
PNKP-212ENST00000599454 AKR1C8PQ5T2L2 129 aa13.7□□□□□ -0.22
PNKP-212ENST00000599454 C15orf54Q8N8G6 183 aa13.7□□□□□ -0.22
PNKP-212ENST00000599454 PKHD1L1Q86WI1 4243 aa13.69□□□□□ -0.22
PNKP-212ENST00000599454 USP17L23D6RBM5 183 aa13.69□□□□□ -0.22
PNKP-212ENST00000599454 LTAP01374 205 aa13.69□□□□□ -0.22
PNKP-212ENST00000599454 ANGP03950 147 aaKnown RBP13.69□□□□□ -0.22
PNKP-212ENST00000599454 FHITP49789 147 aa13.69□□□□□ -0.22
PNKP-212ENST00000599454 MIAQ16674 131 aa13.69□□□□□ -0.22
PNKP-212ENST00000599454 MPV17L2Q567V2 206 aa13.69□□□□□ -0.22
PNKP-212ENST00000599454 DGAT2L7PQ6IED9 249 aa13.69□□□□□ -0.22
PNKP-212ENST00000599454 GIPP09681 153 aaPredicted RBP13.68□□□□□ -0.22
PNKP-212ENST00000599454 TMEM97Q5BJF2 176 aa13.68□□□□□ -0.22
PNKP-212ENST00000599454 PRR27Q6MZM9 219 aa13.68□□□□□ -0.22
PNKP-212ENST00000599454 PTTG1O95997 202 aa13.67□□□□□ -0.22
PNKP-212ENST00000599454 HLA-DQA1P01909 254 aa13.67□□□□□ -0.22
PNKP-212ENST00000599454 ZNF56Q15929 161 aa13.67□□□□□ -0.22
PNKP-212ENST00000599454 Q5BKY6 102 aa13.67□□□□□ -0.22
PNKP-212ENST00000599454 NEXN-AS1Q8NBZ9 246 aa13.67□□□□□ -0.22
PNKP-212ENST00000599454 MAP1LC3B2A6NCE7 125 aa13.66□□□□□ -0.22
PNKP-212ENST00000599454 CXCL1P09341 107 aa13.66□□□□□ -0.22
PNKP-212ENST00000599454 C9orf163Q8N9P6 203 aa13.66□□□□□ -0.22
PNKP-212ENST00000599454 CHCHD5Q9BSY4 110 aa13.66□□□□□ -0.22
PNKP-212ENST00000599454 MAP1LC3BQ9GZQ8 125 aa13.66□□□□□ -0.22
PNKP-212ENST00000599454 AKR1C3P42330 323 aa13.65□□□□□ -0.22
PNKP-212ENST00000599454 STOML3Q8TAV4 291 aa13.65□□□□□ -0.22
PNKP-212ENST00000599454 ZNF471Q9BX82 626 aaPredicted RBP13.65□□□□□ -0.22
PNKP-212ENST00000599454 FXYD6-FXYD2A0A087WZ82 144 aa13.64□□□□□ -0.23
PNKP-212ENST00000599454 PRSS1P07477 247 aa13.64□□□□□ -0.23
PNKP-212ENST00000599454 CST9LP1Q5W188 147 aa13.64□□□□□ -0.23
PNKP-212ENST00000599454 PRR34Q9NV39 138 aa13.64□□□□□ -0.23
PNKP-212ENST00000599454 S100A9P06702 114 aaKnown RBP13.63□□□□□ -0.23
PNKP-212ENST00000599454 RPL19P84098 196 aaKnown RBP13.63□□□□□ -0.23
PNKP-212ENST00000599454 OR10AG1Q8NH19 301 aa13.63□□□□□ -0.23
PNKP-212ENST00000599454 DAZAP1Q96EP5 407 aaKnown RBP13.63□□□□□ -0.23
PNKP-212ENST00000599454 VAX2Q9UIW0 290 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms