RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SLAQ13239 276 aa10.93□□□□□ -0.66
TRIM28-209ENST00000597423 ZFP2Q6ZN57 461 aa10.93□□□□□ -0.66
TRIM28-209ENST00000597423 Q8NAQ8 132 aa10.93□□□□□ -0.66
TRIM28-209ENST00000597423 A0A087WWL8 130 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 TRAV4A0A0B4J268 109 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 GAGE12BA1L429 117 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 GAGE7O76087 117 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 CRYGDP07320 174 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 GAGE12FP0CL80 117 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 GAGE12GP0CL81 117 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 GAGE12IP0CL82 117 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 MRPL51Q4U2R6 128 aaKnown RBP10.92□□□□□ -0.66
TRIM28-209ENST00000597423 FAM74A4Q5TZK3 123 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 CFAP126Q5VTH2 177 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 Q6ZTI0 123 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 ORMDL3Q8N138 153 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 TM2D3Q9BRN9 247 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 KIF25-AS1Q9Y6Z4 181 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 NOTCH1P46531 2555 aa10.92□□□□□ -0.66
TRIM28-209ENST00000597423 H7C1H1 209 aa10.91□□□□□ -0.66
TRIM28-209ENST00000597423 KIAA1644Q3SXP7 199 aa10.91□□□□□ -0.66
TRIM28-209ENST00000597423 FAM222AQ5U5X8 452 aa10.91□□□□□ -0.66
TRIM28-209ENST00000597423 B9D2Q9BPU9 175 aa10.91□□□□□ -0.66
TRIM28-209ENST00000597423 JPT2Q9H910 190 aa10.91□□□□□ -0.66
TRIM28-209ENST00000597423 LAMTOR2Q9Y2Q5 125 aa10.91□□□□□ -0.66
TRIM28-209ENST00000597423 NHLRC4P0CG21 123 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-209ENST00000597423 DEFB130BP0DP73 79 aa10.9□□□□□ -0.66
TRIM28-209ENST00000597423 DEFB130AP0DP74 79 aa10.9□□□□□ -0.66
TRIM28-209ENST00000597423 ZNF56Q15929 161 aa10.9□□□□□ -0.66
TRIM28-209ENST00000597423 POM121L12Q8N7R1 296 aa10.9□□□□□ -0.66
TRIM28-209ENST00000597423 RNF185Q96GF1 192 aa10.9□□□□□ -0.66
TRIM28-209ENST00000597423 C18orf15Q96N68 181 aa10.9□□□□□ -0.66
TRIM28-209ENST00000597423 C11orf68Q9H3H3 251 aaKnown RBP10.9□□□□□ -0.66
TRIM28-209ENST00000597423 RETNQ9HD89 108 aa10.9□□□□□ -0.66
TRIM28-209ENST00000597423 DKK2Q9UBU2 259 aa10.9□□□□□ -0.66
TRIM28-209ENST00000597423 NBEAL1Q6ZS30 2694 aa10.9□□□□□ -0.67
TRIM28-209ENST00000597423 DNAH3Q8TD57 4116 aa10.9□□□□□ -0.67
TRIM28-209ENST00000597423 DAD1P61803 113 aa10.89□□□□□ -0.67
TRIM28-209ENST00000597423 LINC00612Q8N6U2 182 aa10.89□□□□□ -0.67
TRIM28-209ENST00000597423 PRELID3AQ96N28 172 aa10.89□□□□□ -0.67
TRIM28-209ENST00000597423 ALKBH7Q9BT30 221 aaPredicted RBP10.89□□□□□ -0.67
TRIM28-209ENST00000597423 SAMD10Q9BYL1 202 aa10.89□□□□□ -0.67
TRIM28-209ENST00000597423 U3KQK5 164 aa10.89□□□□□ -0.67
TRIM28-209ENST00000597423 D6R8Y8 96 aa10.88□□□□□ -0.67
TRIM28-209ENST00000597423 PHOX2AO14813 284 aa10.88□□□□□ -0.67
TRIM28-209ENST00000597423 DEFB4AO15263 64 aa10.88□□□□□ -0.67
TRIM28-209ENST00000597423 SRIP30626 198 aa10.88□□□□□ -0.67
TRIM28-209ENST00000597423 LINC00315P59091 139 aa10.88□□□□□ -0.67
TRIM28-209ENST00000597423 S100A6P06703 90 aa10.87□□□□□ -0.67
TRIM28-209ENST00000597423 DEFA6Q01524 100 aa10.87□□□□□ -0.67
TRIM28-209ENST00000597423 MUC4Q99102 2169 aa10.87□□□□□ -0.67
TRIM28-209ENST00000597423 IGHV3-73A0A0B4J1V6 119 aa10.86□□□□□ -0.67
TRIM28-209ENST00000597423 TRGV4A0A0C4DH28 118 aa10.86□□□□□ -0.67
TRIM28-209ENST00000597423 Q0VG73 95 aa10.86□□□□□ -0.67
TRIM28-209ENST00000597423 OR10J3Q5JRS4 329 aa10.86□□□□□ -0.67
TRIM28-209ENST00000597423 SUMO4Q6EEV6 95 aa10.86□□□□□ -0.67
TRIM28-209ENST00000597423 UFSP1Q6NVU6 142 aa10.86□□□□□ -0.67
TRIM28-209ENST00000597423 HIST1H2BKO60814 126 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 IGHV3-53P01767 116 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 HIST1H2BJP06899 126 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 HIST1H2BOP23527 126 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 HIST1H2BBP33778 126 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 HIST1H2BDP58876 126 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 HIST1H2BCP62807 126 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 HIST2H2BEQ16778 126 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.85□□□□□ -0.67
TRIM28-209ENST00000597423 BAGE3Q86Y29 109 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 HIST1H2BHQ93079 126 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 ZNF479Q96JC4 524 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 HIST1H2BNQ99877 126 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 HIST1H2BMQ99879 126 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 C20orf78Q9BR46 151 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 MAP1LC3AQ9H492 121 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 EDA2RQ9HAV5 297 aa10.85□□□□□ -0.67
TRIM28-209ENST00000597423 TMA7Q9Y2S6 64 aaKnown RBP10.85□□□□□ -0.67
TRIM28-209ENST00000597423 SMKR1H3BMG3 65 aa10.84□□□□□ -0.67
TRIM28-209ENST00000597423 M0QY20 66 aa10.84□□□□□ -0.67
TRIM28-209ENST00000597423 TNFRSF6BO95407 300 aa10.84□□□□□ -0.67
TRIM28-209ENST00000597423 ATP5G1P05496 136 aa10.84□□□□□ -0.67
TRIM28-209ENST00000597423 DNAJC30Q96LL9 226 aa10.84□□□□□ -0.67
TRIM28-209ENST00000597423 NIT2Q9NQR4 276 aa10.84□□□□□ -0.67
TRIM28-209ENST00000597423 NBEAL2Q6ZNJ1 2754 aa10.83□□□□□ -0.68
TRIM28-209ENST00000597423 TRAV26-2A0A0B4J265 109 aa10.83□□□□□ -0.68
TRIM28-209ENST00000597423 A0A0J9YWU9 116 aa10.83□□□□□ -0.68
TRIM28-209ENST00000597423 TRBV10-1A0A0K0K1A3 114 aa10.83□□□□□ -0.68
TRIM28-209ENST00000597423 NCR2O95944 276 aa10.83□□□□□ -0.68
TRIM28-209ENST00000597423 NDUFA6P56556 154 aa10.83□□□□□ -0.68
TRIM28-209ENST00000597423 PRSS3P2Q8NHM4 247 aa10.83□□□□□ -0.68
TRIM28-209ENST00000597423 PRADC1Q9BSG0 188 aa10.83□□□□□ -0.68
TRIM28-209ENST00000597423 ST20Q9HBF5 79 aa10.83□□□□□ -0.68
TRIM28-209ENST00000597423 TNFRSF18Q9Y5U5 241 aa10.83□□□□□ -0.68
TRIM28-209ENST00000597423 TRBV6-4A0A1B0GX49 114 aa10.82□□□□□ -0.68
TRIM28-209ENST00000597423 NRACQ8N912 160 aa10.82□□□□□ -0.68
TRIM28-209ENST00000597423 C11orf45Q8TAV5 145 aa10.82□□□□□ -0.68
TRIM28-209ENST00000597423 C18orf32Q8TCD1 76 aa10.82□□□□□ -0.68
TRIM28-209ENST00000597423 HHLA3Q9XRX5 114 aa10.82□□□□□ -0.68
TRIM28-209ENST00000597423 TRBV6-5A0A0K0K1A5 114 aa10.81□□□□□ -0.68
TRIM28-209ENST00000597423 PRSS47A8MTI9 375 aa10.81□□□□□ -0.68
TRIM28-209ENST00000597423 NPYP01303 97 aa10.81□□□□□ -0.68
TRIM28-209ENST00000597423 GATA1P15976 413 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms