RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 Q6ZSN1 163 aa10.92□□□□□ -0.66
USHBP1-206ENST00000596436 SYT8Q8NBV8 401 aa10.92□□□□□ -0.66
USHBP1-206ENST00000596436 OR10AG1Q8NH19 301 aa10.92□□□□□ -0.66
USHBP1-206ENST00000596436 OCC1Q8TAD7 63 aa10.92□□□□□ -0.66
USHBP1-206ENST00000596436 PHLDA3Q9Y5J5 127 aa10.92□□□□□ -0.66
USHBP1-206ENST00000596436 FAT1Q14517 4588 aa10.91□□□□□ -0.66
USHBP1-206ENST00000596436 A8MWV9 139 aa10.91□□□□□ -0.66
USHBP1-206ENST00000596436 K7EQD1 137 aa10.91□□□□□ -0.66
USHBP1-206ENST00000596436 SNAI2O43623 268 aa10.91□□□□□ -0.66
USHBP1-206ENST00000596436 CEBPGP53567 150 aa10.91□□□□□ -0.66
USHBP1-206ENST00000596436 SLC25A29Q8N8R3 303 aa10.91□□□□□ -0.66
USHBP1-206ENST00000596436 OR2D3Q8NGH3 330 aa10.91□□□□□ -0.66
USHBP1-206ENST00000596436 MUC21A0A0G2JKD1 596 aa10.9□□□□□ -0.66
USHBP1-206ENST00000596436 MUC21A0A140T8X8 626 aa10.9□□□□□ -0.66
USHBP1-206ENST00000596436 CIDEAO60543 219 aa10.9□□□□□ -0.66
USHBP1-206ENST00000596436 NDUFS6O75380 124 aaKnown RBP10.9□□□□□ -0.66
USHBP1-206ENST00000596436 NXPH4O95158 308 aa10.9□□□□□ -0.66
USHBP1-206ENST00000596436 SRSF3P84103 164 aaKnown RBP10.9□□□□□ -0.66
USHBP1-206ENST00000596436 MRPL23Q16540 153 aaKnown RBP10.9□□□□□ -0.66
USHBP1-206ENST00000596436 ZFP82Q8N141 532 aa10.9□□□□□ -0.66
USHBP1-206ENST00000596436 DAZAP1Q96EP5 407 aaKnown RBP10.9□□□□□ -0.66
USHBP1-206ENST00000596436 SFRP2Q96HF1 295 aa10.9□□□□□ -0.66
USHBP1-206ENST00000596436 SSBP4Q9BWG4 385 aaPredicted RBP10.9□□□□□ -0.66
USHBP1-206ENST00000596436 MRPS16Q9Y3D3 137 aaKnown RBP10.9□□□□□ -0.66
USHBP1-206ENST00000596436 A0A087WWL8 130 aa10.89□□□□□ -0.67
USHBP1-206ENST00000596436 C9JQL5 133 aa10.89□□□□□ -0.67
USHBP1-206ENST00000596436 P01737 135 aa10.89□□□□□ -0.67
USHBP1-206ENST00000596436 OR5AL1P0C617 328 aa10.89□□□□□ -0.67
USHBP1-206ENST00000596436 IGLC6P0CF74 106 aa10.89□□□□□ -0.67
USHBP1-206ENST00000596436 ZFP2Q6ZN57 461 aa10.89□□□□□ -0.67
USHBP1-206ENST00000596436 NUDT10Q8NFP7 164 aa10.89□□□□□ -0.67
USHBP1-206ENST00000596436 NUDT11Q96G61 164 aa10.89□□□□□ -0.67
USHBP1-206ENST00000596436 RNASE7Q9H1E1 156 aaKnown RBP10.89□□□□□ -0.67
USHBP1-206ENST00000596436 TRBV6-4A0A1B0GX49 114 aa10.88□□□□□ -0.67
USHBP1-206ENST00000596436 CRYGDP07320 174 aa10.88□□□□□ -0.67
USHBP1-206ENST00000596436 SRIP30626 198 aa10.88□□□□□ -0.67
USHBP1-206ENST00000596436 Q6ZRN7 208 aaPredicted RBP10.88□□□□□ -0.67
USHBP1-206ENST00000596436 BIN3Q9NQY0 253 aa10.88□□□□□ -0.67
USHBP1-206ENST00000596436 VPS13BQ7Z7G8 4022 aa10.88□□□□□ -0.67
USHBP1-206ENST00000596436 RPS20P60866 119 aaKnown RBP10.87□□□□□ -0.67
USHBP1-206ENST00000596436 RHOHQ15669 191 aa10.87□□□□□ -0.67
USHBP1-206ENST00000596436 FAM74A4Q5TZK3 123 aa10.87□□□□□ -0.67
USHBP1-206ENST00000596436 LYPD5Q6UWN5 251 aa10.87□□□□□ -0.67
USHBP1-206ENST00000596436 NEGR1Q7Z3B1 354 aa10.87□□□□□ -0.67
USHBP1-206ENST00000596436 C14orf178Q8N769 122 aaPredicted RBP10.87□□□□□ -0.67
USHBP1-206ENST00000596436 SMIM7Q9BQ49 75 aa10.87□□□□□ -0.67
USHBP1-206ENST00000596436 Q9UF83 564 aa10.87□□□□□ -0.67
USHBP1-206ENST00000596436 RHODO00212 210 aa10.86□□□□□ -0.67
USHBP1-206ENST00000596436 SSTP61278 116 aa10.86□□□□□ -0.67
USHBP1-206ENST00000596436 FER1L6-AS1Q8NA97 138 aa10.86□□□□□ -0.67
USHBP1-206ENST00000596436 PRADC1Q9BSG0 188 aa10.86□□□□□ -0.67
USHBP1-206ENST00000596436 TPPP3Q9BW30 176 aa10.86□□□□□ -0.67
USHBP1-206ENST00000596436 RPP21Q9H633 154 aaKnown RBP10.86□□□□□ -0.67
USHBP1-206ENST00000596436 MYCBP2O75592 4640 aa10.86□□□□□ -0.67
USHBP1-206ENST00000596436 DMBT1Q9UGM3 2413 aaPredicted RBP10.85□□□□□ -0.67
USHBP1-206ENST00000596436 ZNF727A8MUV8 499 aa10.85□□□□□ -0.67
USHBP1-206ENST00000596436 SPANXN1Q5VSR9 72 aa10.85□□□□□ -0.67
USHBP1-206ENST00000596436 LY96Q9Y6Y9 160 aa10.85□□□□□ -0.67
USHBP1-206ENST00000596436 LINC00694P0DN24 101 aa10.84□□□□□ -0.67
USHBP1-206ENST00000596436 IFITM2Q01629 132 aa10.84□□□□□ -0.67
USHBP1-206ENST00000596436 LINC01551Q86U37 167 aa10.84□□□□□ -0.67
USHBP1-206ENST00000596436 MSRB1Q9NZV6 116 aa10.84□□□□□ -0.67
USHBP1-206ENST00000596436 XKRY2A2RUG3 117 aa10.83□□□□□ -0.68
USHBP1-206ENST00000596436 LINC00315P59091 139 aa10.83□□□□□ -0.68
USHBP1-206ENST00000596436 PEA15Q15121 130 aa10.83□□□□□ -0.68
USHBP1-206ENST00000596436 LYZL1Q6UWQ5 148 aa10.83□□□□□ -0.68
USHBP1-206ENST00000596436 FAM231DQ6ZW35 169 aa10.83□□□□□ -0.68
USHBP1-206ENST00000596436 KIF25-AS1Q9Y6Z4 181 aa10.83□□□□□ -0.68
USHBP1-206ENST00000596436 SRRM2Q9UQ35 2752 aaKnown RBP10.82□□□□□ -0.68
USHBP1-206ENST00000596436 GAGE12JA6NER3 117 aa10.82□□□□□ -0.68
USHBP1-206ENST00000596436 CTRLP40313 264 aa10.82□□□□□ -0.68
USHBP1-206ENST00000596436 GAGE1Q13065 139 aa10.82□□□□□ -0.68
USHBP1-206ENST00000596436 GAGE4Q13068 117 aa10.82□□□□□ -0.68
USHBP1-206ENST00000596436 GAGE5Q13069 117 aa10.82□□□□□ -0.68
USHBP1-206ENST00000596436 GAGE13Q4V321 117 aa10.82□□□□□ -0.68
USHBP1-206ENST00000596436 GTSF1Q8WW33 167 aa10.82□□□□□ -0.68
USHBP1-206ENST00000596436 EPM2AB3EWF7 344 aa10.81□□□□□ -0.68
USHBP1-206ENST00000596436 GATCO43716 136 aaKnown RBP10.81□□□□□ -0.68
USHBP1-206ENST00000596436 SH2D6Q7Z4S9 175 aa10.81□□□□□ -0.68
USHBP1-206ENST00000596436 WFDC10BQ8IUB3 73 aa10.81□□□□□ -0.68
USHBP1-206ENST00000596436 PGPEP1Q9NXJ5 209 aa10.81□□□□□ -0.68
USHBP1-206ENST00000596436 XGP55808 180 aa10.8□□□□□ -0.68
USHBP1-206ENST00000596436 TIRAPP58753 221 aa10.8□□□□□ -0.68
USHBP1-206ENST00000596436 ERVFC1-1P60608 527 aa10.8□□□□□ -0.68
USHBP1-206ENST00000596436 RPL23P62829 140 aaKnown RBP10.8□□□□□ -0.68
USHBP1-206ENST00000596436 CACNG7P62955 275 aa10.8□□□□□ -0.68
USHBP1-206ENST00000596436 ZNF56Q15929 161 aa10.8□□□□□ -0.68
USHBP1-206ENST00000596436 FAM74A3Q4VXF1 159 aa10.8□□□□□ -0.68
USHBP1-206ENST00000596436 AP1S3Q96PC3 154 aa10.8□□□□□ -0.68
USHBP1-206ENST00000596436 SMDT1Q9H4I9 107 aa10.8□□□□□ -0.68
USHBP1-206ENST00000596436 F2Z2F3 143 aa10.79□□□□□ -0.68
USHBP1-206ENST00000596436 SIVA1O15304 175 aa10.79□□□□□ -0.68
USHBP1-206ENST00000596436 RAB4BP61018 213 aa10.79□□□□□ -0.68
USHBP1-206ENST00000596436 RAB14P61106 215 aa10.79□□□□□ -0.68
USHBP1-206ENST00000596436 TMEM241Q24JQ0 296 aa10.79□□□□□ -0.68
USHBP1-206ENST00000596436 CDPF1Q6NVV7 123 aa10.79□□□□□ -0.68
USHBP1-206ENST00000596436 ATP6V0E2Q8NHE4 81 aa10.79□□□□□ -0.68
USHBP1-206ENST00000596436 CNFNQ9BYD5 112 aa10.79□□□□□ -0.68
USHBP1-206ENST00000596436 NTF3P20783 257 aa10.78□□□□□ -0.68
USHBP1-206ENST00000596436 CT83Q5H943 113 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms