RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 TRAV21A0A0B4J279 112 aa9.74□□□□□ -0.85
VRK3-205ENST00000593919 C20orf202A1L168 122 aa9.74□□□□□ -0.85
VRK3-205ENST00000593919 RBMY1BA6NDE4 496 aaKnown RBP9.74□□□□□ -0.85
VRK3-205ENST00000593919 RBMY1EA6NEQ0 496 aaKnown RBP9.74□□□□□ -0.85
VRK3-205ENST00000593919 NPSP0C0P6 89 aa9.74□□□□□ -0.85
VRK3-205ENST00000593919 RBMY1DP0C7P1 496 aaKnown RBP9.74□□□□□ -0.85
VRK3-205ENST00000593919 GAGE1Q13065 139 aa9.74□□□□□ -0.85
VRK3-205ENST00000593919 FAM110AQ9BQ89 295 aa9.74□□□□□ -0.85
VRK3-205ENST00000593919 MCRIP2Q9BUT9 160 aaKnown RBP9.74□□□□□ -0.85
VRK3-205ENST00000593919 WFDC10AQ9H1F0 79 aa9.74□□□□□ -0.85
VRK3-205ENST00000593919 ZMAT4Q9H898 229 aa9.74□□□□□ -0.85
VRK3-205ENST00000593919 C19orf73Q9NVV2 129 aa9.74□□□□□ -0.85
VRK3-205ENST00000593919 GOLT1BQ9Y3E0 138 aa9.74□□□□□ -0.85
VRK3-205ENST00000593919 CBY1Q9Y3M2 126 aa9.74□□□□□ -0.85
VRK3-205ENST00000593919 CRXO43186 299 aaPredicted RBP9.73□□□□□ -0.85
VRK3-205ENST00000593919 IGLC3P0DOY3 106 aa9.73□□□□□ -0.85
VRK3-205ENST00000593919 TSPOP30536 169 aa9.73□□□□□ -0.85
VRK3-205ENST00000593919 UQCR10Q9UDW1 63 aa9.73□□□□□ -0.85
VRK3-205ENST00000593919 C7orf71A4D174 169 aa9.72□□□□□ -0.85
VRK3-205ENST00000593919 H3BVH4 76 aa9.72□□□□□ -0.85
VRK3-205ENST00000593919 GAS8-AS1O95177 125 aa9.72□□□□□ -0.85
VRK3-205ENST00000593919 IGLL1P15814 213 aa9.72□□□□□ -0.85
VRK3-205ENST00000593919 CMC4P56277 68 aaPredicted RBP9.72□□□□□ -0.85
VRK3-205ENST00000593919 FXYD7P58549 80 aa9.72□□□□□ -0.85
VRK3-205ENST00000593919 MRPL52Q86TS9 123 aaKnown RBP9.72□□□□□ -0.85
VRK3-205ENST00000593919 STHQ8IWL8 128 aa9.72□□□□□ -0.85
VRK3-205ENST00000593919 TRAV12-3A0A0B4J271 114 aa9.72□□□□□ -0.85
VRK3-205ENST00000593919 Q6ZN92 141 aa9.72□□□□□ -0.85
VRK3-205ENST00000593919 A0A096LNJ9 63 aa9.71□□□□□ -0.86
VRK3-205ENST00000593919 EVI2AP22794 236 aa9.71□□□□□ -0.86
VRK3-205ENST00000593919 SPANXN1Q5VSR9 72 aa9.71□□□□□ -0.86
VRK3-205ENST00000593919 GATA1P15976 413 aaPredicted RBP9.7□□□□□ -0.86
VRK3-205ENST00000593919 BATFQ16520 125 aa9.7□□□□□ -0.86
VRK3-205ENST00000593919 SMIM15Q7Z3B0 74 aa9.7□□□□□ -0.86
VRK3-205ENST00000593919 TRPT1Q86TN4 253 aaKnown RBP9.7□□□□□ -0.86
VRK3-205ENST00000593919 PMCHL2Q9BQD1 86 aa9.7□□□□□ -0.86
VRK3-205ENST00000593919 MAP1LC3AQ9H492 121 aa9.7□□□□□ -0.86
VRK3-205ENST00000593919 hDV102S1A0JD36 115 aa9.7□□□□□ -0.86
VRK3-205ENST00000593919 WIPF1O43516 503 aa9.7□□□□□ -0.86
VRK3-205ENST00000593919 SNAI2O43623 268 aa9.7□□□□□ -0.86
VRK3-205ENST00000593919 PPBPP02775 128 aa9.7□□□□□ -0.86
VRK3-205ENST00000593919 HNRNPA3P51991 378 aaKnown RBP9.7□□□□□ -0.86
VRK3-205ENST00000593919 ANXA2RQ3ZCQ2 193 aa9.7□□□□□ -0.86
VRK3-205ENST00000593919 SPRY2O43597 315 aa9.69□□□□□ -0.86
VRK3-205ENST00000593919 GTSCR1Q86UQ5 136 aa9.69□□□□□ -0.86
VRK3-205ENST00000593919 RBMY1A1P0DJD3 496 aaKnown RBP9.68□□□□□ -0.86
VRK3-205ENST00000593919 RBMY1CP0DJD4 496 aa9.68□□□□□ -0.86
VRK3-205ENST00000593919 S100A4P26447 101 aaKnown RBP9.68□□□□□ -0.86
VRK3-205ENST00000593919 PCP4P48539 62 aa9.68□□□□□ -0.86
VRK3-205ENST00000593919 CACNG7P62955 275 aa9.68□□□□□ -0.86
VRK3-205ENST00000593919 RBMY1FQ15415 496 aaKnown RBP9.68□□□□□ -0.86
VRK3-205ENST00000593919 MUC4Q99102 2169 aa9.68□□□□□ -0.86
VRK3-205ENST00000593919 TRAV26-2A0A0B4J265 109 aa9.68□□□□□ -0.86
VRK3-205ENST00000593919 HBDP02042 147 aa9.68□□□□□ -0.86
VRK3-205ENST00000593919 ASIPP42127 132 aa9.68□□□□□ -0.86
VRK3-205ENST00000593919 LINC01545Q5VT33 79 aa9.68□□□□□ -0.86
VRK3-205ENST00000593919 FAM159AQ6UWV7 190 aa9.68□□□□□ -0.86
VRK3-205ENST00000593919 M0R381 172 aa9.67□□□□□ -0.86
VRK3-205ENST00000593919 DEFB125Q8N687 156 aa9.67□□□□□ -0.86
VRK3-205ENST00000593919 LAMTOR2Q9Y2Q5 125 aa9.67□□□□□ -0.86
VRK3-205ENST00000593919 IGHV4-4A0A075B6R2 117 aa9.66□□□□□ -0.86
VRK3-205ENST00000593919 HSBP1L1C9JCN9 74 aa9.66□□□□□ -0.86
VRK3-205ENST00000593919 GNRH2O43555 120 aa9.66□□□□□ -0.86
VRK3-205ENST00000593919 ST20Q9HBF5 79 aa9.66□□□□□ -0.86
VRK3-205ENST00000593919 NXT2Q9NPJ8 142 aaKnown RBP9.66□□□□□ -0.86
VRK3-205ENST00000593919 XCL2Q9UBD3 114 aa9.66□□□□□ -0.86
VRK3-205ENST00000593919 TP73-AS1Q9UF72 201 aa9.66□□□□□ -0.86
VRK3-205ENST00000593919 DNAH3Q8TD57 4116 aa9.65□□□□□ -0.86
VRK3-205ENST00000593919 IGHV1OR15-1A0A075B7D0 117 aa9.65□□□□□ -0.86
VRK3-205ENST00000593919 INSP01308 110 aa9.65□□□□□ -0.86
VRK3-205ENST00000593919 RPL35AP18077 110 aaKnown RBP9.65□□□□□ -0.86
VRK3-205ENST00000593919 MDFIQ99750 246 aa9.65□□□□□ -0.86
VRK3-205ENST00000593919 PHLDA3Q9Y5J5 127 aa9.65□□□□□ -0.86
VRK3-205ENST00000593919 NOTCH1P46531 2555 aa9.65□□□□□ -0.87
VRK3-205ENST00000593919 RNASE3P12724 160 aaKnown RBP9.64□□□□□ -0.87
VRK3-205ENST00000593919 Q8N1Y9 231 aa9.64□□□□□ -0.87
VRK3-205ENST00000593919 NRACQ8N912 160 aa9.64□□□□□ -0.87
VRK3-205ENST00000593919 IFI27L1Q96BM0 104 aa9.64□□□□□ -0.87
VRK3-205ENST00000593919 C18orf15Q96N68 181 aa9.64□□□□□ -0.87
VRK3-205ENST00000593919 LINC01546A6NGU7 62 aa9.63□□□□□ -0.87
VRK3-205ENST00000593919 GIG44P09565 113 aaPredicted RBP9.63□□□□□ -0.87
VRK3-205ENST00000593919 Q8N8P6 123 aa9.63□□□□□ -0.87
VRK3-205ENST00000593919 NBEAL1Q6ZS30 2694 aa9.63□□□□□ -0.87
VRK3-205ENST00000593919 NBEAL2Q6ZNJ1 2754 aa9.63□□□□□ -0.87
VRK3-205ENST00000593919 HTN1P15515 57 aa9.63□□□□□ -0.87
VRK3-205ENST00000593919 IGLV2-18A0A075B6J9 118 aa9.62□□□□□ -0.87
VRK3-205ENST00000593919 IGHV3-16A0A0C4DH30 117 aa9.62□□□□□ -0.87
VRK3-205ENST00000593919 PRM2P04554 102 aa9.62□□□□□ -0.87
VRK3-205ENST00000593919 MGPP08493 103 aa9.62□□□□□ -0.87
VRK3-205ENST00000593919 MED14OSP0DP75 135 aa9.62□□□□□ -0.87
VRK3-205ENST00000593919 FCER1GP30273 86 aa9.62□□□□□ -0.87
VRK3-205ENST00000593919 LGALS9BQ3B8N2 356 aa9.62□□□□□ -0.87
VRK3-205ENST00000593919 LGALS9CQ6DKI2 356 aa9.62□□□□□ -0.87
VRK3-205ENST00000593919 C14orf178Q8N769 122 aaPredicted RBP9.62□□□□□ -0.87
VRK3-205ENST00000593919 MRAP2Q96G30 205 aa9.62□□□□□ -0.87
VRK3-205ENST00000593919 SCRT2Q9NQ03 307 aa9.62□□□□□ -0.87
VRK3-205ENST00000593919 MDFICQ9P1T7 246 aa9.62□□□□□ -0.87
VRK3-205ENST00000593919 MRPS16Q9Y3D3 137 aaKnown RBP9.62□□□□□ -0.87
VRK3-205ENST00000593919 CBY3A6NI87 242 aa9.61□□□□□ -0.87
VRK3-205ENST00000593919 HINT1P49773 126 aaPredicted RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms