RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ERG28Q9UKR5 140 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 ANKRD17O75179 2603 aaKnown RBP7.55□□□□□ -1.2
LIG3-216ENST00000593099 FAM240AA0A1B0GVK7 77 aa7.55□□□□□ -1.2
LIG3-216ENST00000593099 RBMY1BA6NDE4 496 aaKnown RBP7.55□□□□□ -1.2
LIG3-216ENST00000593099 RBMY1EA6NEQ0 496 aaKnown RBP7.55□□□□□ -1.2
LIG3-216ENST00000593099 LGALS9O00182 355 aa7.55□□□□□ -1.2
LIG3-216ENST00000593099 RBMY1DP0C7P1 496 aaKnown RBP7.55□□□□□ -1.2
LIG3-216ENST00000593099 RBMY1A1P0DJD3 496 aaKnown RBP7.55□□□□□ -1.2
LIG3-216ENST00000593099 RBMY1CP0DJD4 496 aa7.55□□□□□ -1.2
LIG3-216ENST00000593099 CFHR3Q02985 330 aa7.55□□□□□ -1.2
LIG3-216ENST00000593099 RBMY1FQ15415 496 aaKnown RBP7.55□□□□□ -1.2
LIG3-216ENST00000593099 STPG4Q8N801 248 aa7.55□□□□□ -1.2
LIG3-216ENST00000593099 C1orf159Q96HA4 380 aa7.55□□□□□ -1.2
LIG3-216ENST00000593099 TRBV24-1A0A075B6N3 115 aa7.55□□□□□ -1.2
LIG3-216ENST00000593099 C10orf99Q6UWK7 81 aa7.55□□□□□ -1.2
LIG3-216ENST00000593099 AMN1Q8IY45 258 aa7.55□□□□□ -1.2
LIG3-216ENST00000593099 RBAKDNA6NC62 111 aa7.55□□□□□ -1.2
LIG3-216ENST00000593099 SMIM9A6NGZ8 99 aa7.55□□□□□ -1.2
LIG3-216ENST00000593099 IFI27P40305 119 aaPredicted RBP7.55□□□□□ -1.2
LIG3-216ENST00000593099 TEX48A0A1B0GUV7 120 aa7.54□□□□□ -1.2
LIG3-216ENST00000593099 IGKV1OR2-108A0A075B7D4 117 aa7.54□□□□□ -1.2
LIG3-216ENST00000593099 A0A087WWL8 130 aa7.54□□□□□ -1.2
LIG3-216ENST00000593099 SPTSSBQ8NFR3 76 aa7.54□□□□□ -1.2
LIG3-216ENST00000593099 PRRC2CQ9Y520 2896 aaKnown RBP7.54□□□□□ -1.2
LIG3-216ENST00000593099 PSMB8P28062 276 aa7.54□□□□□ -1.2
LIG3-216ENST00000593099 SRSF1Q07955 248 aaKnown RBP eCLIP7.54□□□□□ -1.2
LIG3-216ENST00000593099 ORMDL2Q53FV1 153 aa7.53□□□□□ -1.2
LIG3-216ENST00000593099 ZNF493Q6ZR52 646 aa7.53□□□□□ -1.2
LIG3-216ENST00000593099 RNF152Q8N8N0 203 aa7.53□□□□□ -1.2
LIG3-216ENST00000593099 PRSS29PA6NIE9 313 aa7.53□□□□□ -1.2
LIG3-216ENST00000593099 TMEM242Q9NWH2 141 aa7.53□□□□□ -1.2
LIG3-216ENST00000593099 BRCA2P51587 3418 aa7.53□□□□□ -1.2
LIG3-216ENST00000593099 C11orf52Q96A22 123 aa7.53□□□□□ -1.2
LIG3-216ENST00000593099 GNB1LQ9BYB4 327 aa7.53□□□□□ -1.2
LIG3-216ENST00000593099 H3BMM0 161 aa7.52□□□□□ -1.2
LIG3-216ENST00000593099 Q6ZS46 218 aa7.52□□□□□ -1.2
LIG3-216ENST00000593099 NUP35Q8NFH5 326 aa7.52□□□□□ -1.2
LIG3-216ENST00000593099 UBE2WQ96B02 151 aa7.52□□□□□ -1.2
LIG3-216ENST00000593099 ADARB2-AS1A8MUL3 147 aa7.52□□□□□ -1.21
LIG3-216ENST00000593099 GFRA4Q9GZZ7 299 aa7.52□□□□□ -1.21
LIG3-216ENST00000593099 ZNF815PA8K554 130 aa7.52□□□□□ -1.21
LIG3-216ENST00000593099 CXCL1P09341 107 aa7.52□□□□□ -1.21
LIG3-216ENST00000593099 TAL2Q16559 108 aa7.52□□□□□ -1.21
LIG3-216ENST00000593099 LINC01549A6NIU2 74 aa7.52□□□□□ -1.21
LIG3-216ENST00000593099 VCYO14598 125 aa7.52□□□□□ -1.21
LIG3-216ENST00000593099 IGLL1P15814 213 aa7.52□□□□□ -1.21
LIG3-216ENST00000593099 IGLC2P0DOY2 106 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 IGLC3P0DOY3 106 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 DEFB114Q30KQ6 69 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 MORN5Q5VZ52 161 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 SPART-AS1P0CW21 52 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 ASPHD1Q5U4P2 390 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 IGF2BP2-AS1Q96M15 143 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 RBX1P62877 108 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 IGKV1D-37A0A075B6S9 117 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 A0A1W2PPM0 123 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 MALP21145 153 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 PRR31Q5SQ13 230 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 A0A0C4DFX4 3053 aa7.51□□□□□ -1.21
LIG3-216ENST00000593099 IGHV3-16A0A0C4DH30 117 aa7.5□□□□□ -1.21
LIG3-216ENST00000593099 ZC2HC1AQ96GY0 325 aa7.5□□□□□ -1.21
LIG3-216ENST00000593099 FAM167A-AS1Q96KT0 104 aa7.5□□□□□ -1.21
LIG3-216ENST00000593099 NOP10Q9NPE3 64 aaKnown RBP7.5□□□□□ -1.21
LIG3-216ENST00000593099 M0R2P5 195 aa7.5□□□□□ -1.21
LIG3-216ENST00000593099 IGLV1-40P01703 118 aa7.5□□□□□ -1.21
LIG3-216ENST00000593099 C3orf79P0CE67 100 aa7.5□□□□□ -1.21
LIG3-216ENST00000593099 RAI1Q7Z5J4 1906 aaPredicted RBP7.5□□□□□ -1.21
LIG3-216ENST00000593099 TMEM213A2RRL7 107 aa7.5□□□□□ -1.21
LIG3-216ENST00000593099 G3V4G9 280 aa7.5□□□□□ -1.21
LIG3-216ENST00000593099 ATOX1O00244 68 aa7.5□□□□□ -1.21
LIG3-216ENST00000593099 TRPT1Q86TN4 253 aaKnown RBP7.5□□□□□ -1.21
LIG3-216ENST00000593099 FAM110AQ9BQ89 295 aa7.5□□□□□ -1.21
LIG3-216ENST00000593099 SORL1Q92673 2214 aa7.5□□□□□ -1.21
LIG3-216ENST00000593099 D6R8Y8 96 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 DEFB135Q30KP9 77 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 FAM231DQ6ZW35 169 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 MAP6D1Q9H9H5 199 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 TOMM7Q9P0U1 55 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 TINCRA0A1B0GVN0 87 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 DEFB125Q8N687 156 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 PHLDA1Q8WV24 401 aaPredicted RBP7.49□□□□□ -1.21
LIG3-216ENST00000593099 C11orf1Q9H5F2 150 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 hDV102S1A0JD36 115 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 PRSS46E5RG02 174 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 CHAC1Q9BUX1 264 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 PAX4O43316 350 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 PSCAO43653 123 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 GHRHP01286 108 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 KLF5Q13887 457 aaPredicted RBP7.49□□□□□ -1.21
LIG3-216ENST00000593099 C16orf74Q96GX8 76 aa7.49□□□□□ -1.21
LIG3-216ENST00000593099 INAFM2P0DMQ5 153 aa7.48□□□□□ -1.21
LIG3-216ENST00000593099 HELZ2Q9BYK8 2649 aaKnown RBP7.48□□□□□ -1.21
LIG3-216ENST00000593099 HBDP02042 147 aa7.48□□□□□ -1.21
LIG3-216ENST00000593099 A0A0J9YX75 114 aa7.48□□□□□ -1.21
LIG3-216ENST00000593099 LTAP01374 205 aa7.48□□□□□ -1.21
LIG3-216ENST00000593099 C16orf95Q9H693 158 aa7.48□□□□□ -1.21
LIG3-216ENST00000593099 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.47□□□□□ -1.21
LIG3-216ENST00000593099 K7EQG2 157 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 PRUNE2Q8WUY3 3088 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 FAM236AA0A1B0GUQ0 79 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms