RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 F11RQ9Y624 299 aaKnown RBP3.17□□□□□ -1.9
LIG3-211ENST00000588713 VPS13DQ5THJ4 4388 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 TRBV7-3A0A075B6L6 115 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 TRAV26-1A0A087WT03 109 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 TRAV8-1A0A0A6YYK1 113 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 TRAV12-1A0A0B4J245 112 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 NCBP2LA6PVI3 153 aaKnown RBP3.16□□□□□ -1.9
LIG3-211ENST00000588713 M0QXV9 152 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 TNFRSF13BO14836 293 aaPredicted RBP3.16□□□□□ -1.9
LIG3-211ENST00000588713 SH2D1AO60880 128 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 APOMO95445 188 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 NPYP01303 97 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 LYZP61626 148 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 TM4SF20Q53R12 229 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 KHDC1LQ5JSQ8 128 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 C10orf55Q5SWW7 151 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 UTF1Q5T230 341 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 CFAP161Q6P656 301 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 AMN1Q8IY45 258 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 Q8N1X5 172 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 OR11H6Q8NGC7 330 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 SGK494Q96LW2 274 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 SPAG8Q99932 426 aaPredicted RBP3.16□□□□□ -1.9
LIG3-211ENST00000588713 RASL11BQ9BPW5 248 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 AAMDCQ9H7C9 122 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 SPANXA1Q9NS26 97 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 ERG28Q9UKR5 140 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 RNF213Q63HN8 5207 aa3.16□□□□□ -1.9
LIG3-211ENST00000588713 FAT2Q9NYQ8 4349 aa3.15□□□□□ -1.9
LIG3-211ENST00000588713 IGKV2D-26A0A0A0MRZ7 120 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 LOC389332A0A1B0GUA5 103 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 TMEM213A2RRL7 107 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 E7EUB6 86 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 K7EMI3 77 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 MRPS12O15235 138 aaKnown RBP3.15□□□□□ -1.91
LIG3-211ENST00000588713 CRYGBP07316 175 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 FAM106CPP0CH98 169 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 INAFM2P0DMQ5 153 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 CKS2P33552 79 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 GLRXP35754 106 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 FOXI1Q12951 378 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 WFDC2Q14508 124 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 LY6EQ16553 131 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 C12orf74Q32Q52 190 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 ETDBQ3ZM63 59 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 FAM106AQ4KMX7 169 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 ZC2HC1BQ5TFG8 222 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 CFAP126Q5VTH2 177 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 LYZL1Q6UWQ5 148 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 Q6ZUT4 128 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 EXOC3-AS1Q8N2X6 119 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 FAM216BQ8N7L0 139 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 LINC00482Q8N8I6 264 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 Q8N8P6 123 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 PPDPFLQ8WWR9 84 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 CCDC140Q96MF4 163 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 CDIP1Q9H305 208 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 DKK2Q9UBU2 259 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 HHLA3Q9XRX5 114 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 DNAH2Q9P225 4427 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 MYCBP2O75592 4640 aa3.15□□□□□ -1.91
LIG3-211ENST00000588713 IGLV2-18A0A075B6J9 118 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 A0A087WX48 190 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 TEX22C9J3V5 150 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 TMEM262E9PQX1 116 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 F8VRH5 84 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 H3BTX0 84 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 I3L2K1 104 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 SCGB2A1O75556 95 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 TNFRSF6BO95407 300 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 IGHG4P01861 327 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 IL4P05112 153 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 SPINK8P0C7L1 97 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 TNFRSF1AP19438 455 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 LEPP41159 167 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 CRIP1P50238 77 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 UBE2D1P51668 147 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 UBE2D3P61077 147 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 UBE2D2P62837 147 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 TNFAIP6P98066 277 aaPredicted RBP3.14□□□□□ -1.91
LIG3-211ENST00000588713 MRGPRG-AS1Q2M3A8 158 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 TEN1Q86WV5 123 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 SYT8Q8NBV8 401 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 RPEQ96AT9 228 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 RNF125Q96EQ8 232 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 RNF185Q96GF1 192 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 HIST1H4GQ99525 98 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 TM2D3Q9BRN9 247 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 TPPP3Q9BW30 176 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 TMEM133Q9H2Q1 129 aa3.14□□□□□ -1.91
LIG3-211ENST00000588713 TRBV20-1A0A075B6N2 111 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 IGHV1-69DA0A0B4J2H0 117 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 CENPVL3A0A0U1RRI6 287 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 MYMXA0A1B0GTQ4 84 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 RBAKDNA6NC62 111 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 PRSS29PA6NIE9 313 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 LINC01549A6NIU2 74 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 C17orf100A8MU93 164 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 SPRY3O43610 288 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 IGKV1-17P01599 117 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 137.1 ms