RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 PHLDA3Q9Y5J5 127 aa9.66□□□□□ -0.86
SMARCE1-216ENST00000580419 IGLV5-52A0A0A0MRZ9 124 aa9.65□□□□□ -0.86
SMARCE1-216ENST00000580419 H3BVH4 76 aa9.65□□□□□ -0.86
SMARCE1-216ENST00000580419 ZFP82Q8N141 532 aa9.65□□□□□ -0.86
SMARCE1-216ENST00000580419 MLST8Q9BVC4 326 aa9.65□□□□□ -0.86
SMARCE1-216ENST00000580419 A0A0D9SG52 128 aa9.64□□□□□ -0.87
SMARCE1-216ENST00000580419 TPT1P13693 172 aaKnown RBP9.64□□□□□ -0.87
SMARCE1-216ENST00000580419 EIF5AP63241 154 aaKnown RBP9.64□□□□□ -0.87
SMARCE1-216ENST00000580419 OR10G8Q8NGN5 311 aa9.64□□□□□ -0.87
SMARCE1-216ENST00000580419 RMI2Q96E14 147 aa9.64□□□□□ -0.87
SMARCE1-216ENST00000580419 SAMD10Q9BYL1 202 aa9.64□□□□□ -0.87
SMARCE1-216ENST00000580419 HERC1Q15751 4861 aa9.64□□□□□ -0.87
SMARCE1-216ENST00000580419 IGHV3-30P01768 117 aa9.63□□□□□ -0.87
SMARCE1-216ENST00000580419 IGHV3-33P01772 117 aa9.63□□□□□ -0.87
SMARCE1-216ENST00000580419 IGHV3-30-3P0DP02 117 aa9.63□□□□□ -0.87
SMARCE1-216ENST00000580419 IGHV3-30-5P0DP03 117 aa9.63□□□□□ -0.87
SMARCE1-216ENST00000580419 ELOBQ15370 118 aa9.63□□□□□ -0.87
SMARCE1-216ENST00000580419 CST9LP1Q5W188 147 aa9.63□□□□□ -0.87
SMARCE1-216ENST00000580419 ATRAIDQ6UW56 229 aa9.63□□□□□ -0.87
SMARCE1-216ENST00000580419 Q6ZSA8 131 aa9.63□□□□□ -0.87
SMARCE1-216ENST00000580419 SSBP4Q9BWG4 385 aaPredicted RBP9.63□□□□□ -0.87
SMARCE1-216ENST00000580419 FLG2Q5D862 2391 aaPredicted RBP9.63□□□□□ -0.87
SMARCE1-216ENST00000580419 MYCBP2O75592 4640 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 TRBV7-3A0A075B6L6 115 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 GAGE12JA6NER3 117 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 AKR1C3P42330 323 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 GAGE1Q13065 139 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 GAGE4Q13068 117 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 GAGE5Q13069 117 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 GAGE13Q4V321 117 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 Q5VSD8 79 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 NIT1Q86X76 327 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 C14orf178Q8N769 122 aaPredicted RBP9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 JPT2Q9H910 190 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 Q9HAA7 133 aa9.62□□□□□ -0.87
SMARCE1-216ENST00000580419 FAM229AH3BQW9 127 aa9.61□□□□□ -0.87
SMARCE1-216ENST00000580419 M0R036 132 aa9.61□□□□□ -0.87
SMARCE1-216ENST00000580419 PAGE4O60829 102 aa9.61□□□□□ -0.87
SMARCE1-216ENST00000580419 OR5AL1P0C617 328 aa9.61□□□□□ -0.87
SMARCE1-216ENST00000580419 RAB4BP61018 213 aa9.61□□□□□ -0.87
SMARCE1-216ENST00000580419 RPL36AP83881 106 aaKnown RBP9.61□□□□□ -0.87
SMARCE1-216ENST00000580419 RPL36ALQ969Q0 106 aaKnown RBP9.61□□□□□ -0.87
SMARCE1-216ENST00000580419 URGCP-MRPS24S4R325 110 aa9.61□□□□□ -0.87
SMARCE1-216ENST00000580419 TRAV1-1A0A0B4J248 108 aa9.6□□□□□ -0.87
SMARCE1-216ENST00000580419 SNAI2O43623 268 aa9.6□□□□□ -0.87
SMARCE1-216ENST00000580419 INAFM2P0DMQ5 153 aa9.6□□□□□ -0.87
SMARCE1-216ENST00000580419 FUSP35637 526 aaKnown RBP eCLIP9.6□□□□□ -0.87
SMARCE1-216ENST00000580419 UBE2D3P61077 147 aa9.6□□□□□ -0.87
SMARCE1-216ENST00000580419 PKIAP61925 76 aa9.6□□□□□ -0.87
SMARCE1-216ENST00000580419 UBE2D2P62837 147 aa9.6□□□□□ -0.87
SMARCE1-216ENST00000580419 PRR27Q6MZM9 219 aa9.6□□□□□ -0.87
SMARCE1-216ENST00000580419 SFT2D1Q8WV19 159 aa9.6□□□□□ -0.87
SMARCE1-216ENST00000580419 Q9UF83 564 aa9.6□□□□□ -0.87
SMARCE1-216ENST00000580419 BCL2L11O43521 198 aa9.59□□□□□ -0.87
SMARCE1-216ENST00000580419 PFDN1O60925 122 aa9.59□□□□□ -0.87
SMARCE1-216ENST00000580419 Q0VG73 95 aa9.59□□□□□ -0.87
SMARCE1-216ENST00000580419 TMEM97Q5BJF2 176 aa9.59□□□□□ -0.87
SMARCE1-216ENST00000580419 DAZ4Q86SG3 579 aaKnown RBP9.59□□□□□ -0.87
SMARCE1-216ENST00000580419 Q8N976 141 aa9.59□□□□□ -0.87
SMARCE1-216ENST00000580419 SMIM12Q96EX1 92 aa9.59□□□□□ -0.87
SMARCE1-216ENST00000580419 DAZ3Q9NR90 486 aaKnown RBP9.59□□□□□ -0.87
SMARCE1-216ENST00000580419 KANTRA0A1W2PQU2 76 aa9.58□□□□□ -0.88
SMARCE1-216ENST00000580419 GRIFINA4D1Z8 144 aa9.58□□□□□ -0.88
SMARCE1-216ENST00000580419 M0R381 172 aa9.58□□□□□ -0.88
SMARCE1-216ENST00000580419 RAB5CP51148 216 aa9.58□□□□□ -0.88
SMARCE1-216ENST00000580419 FAM74A4Q5TZK3 123 aa9.58□□□□□ -0.88
SMARCE1-216ENST00000580419 BAGE2Q86Y30 109 aa9.58□□□□□ -0.88
SMARCE1-216ENST00000580419 C11orf52Q96A22 123 aa9.58□□□□□ -0.88
SMARCE1-216ENST00000580419 ZNF471Q9BX82 626 aaPredicted RBP9.58□□□□□ -0.88
SMARCE1-216ENST00000580419 A0A087WWL8 130 aa9.57□□□□□ -0.88
SMARCE1-216ENST00000580419 A0A087WX48 190 aa9.57□□□□□ -0.88
SMARCE1-216ENST00000580419 H2AFB1P0C5Y9 115 aa9.57□□□□□ -0.88
SMARCE1-216ENST00000580419 TMUB2Q71RG4 321 aa9.57□□□□□ -0.88
SMARCE1-216ENST00000580419 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.57□□□□□ -0.88
SMARCE1-216ENST00000580419 FAM213BQ8TBF2 198 aa9.57□□□□□ -0.88
SMARCE1-216ENST00000580419 MANBALQ9NQG1 85 aa9.57□□□□□ -0.88
SMARCE1-216ENST00000580419 VAX2Q9UIW0 290 aa9.57□□□□□ -0.88
SMARCE1-216ENST00000580419 TRBV6-8A0A0A6YYG3 113 aa9.56□□□□□ -0.88
SMARCE1-216ENST00000580419 EIF5AL1Q6IS14 154 aaKnown RBP9.56□□□□□ -0.88
SMARCE1-216ENST00000580419 KCNIP4Q6PIL6 250 aa9.56□□□□□ -0.88
SMARCE1-216ENST00000580419 SCO2A0A1W2PP80 73 aa9.55□□□□□ -0.88
SMARCE1-216ENST00000580419 C14orf177Q52M58 125 aa9.55□□□□□ -0.88
SMARCE1-216ENST00000580419 Q8N3U1 123 aa9.55□□□□□ -0.88
SMARCE1-216ENST00000580419 TEX46H3BTG2 121 aa9.54□□□□□ -0.88
SMARCE1-216ENST00000580419 WFDC2Q14508 124 aa9.54□□□□□ -0.88
SMARCE1-216ENST00000580419 OR10AG1Q8NH19 301 aa9.54□□□□□ -0.88
SMARCE1-216ENST00000580419 KIF25-AS1Q9Y6Z4 181 aa9.54□□□□□ -0.88
SMARCE1-216ENST00000580419 TMSB15BA0A087X1C1 80 aa9.53□□□□□ -0.88
SMARCE1-216ENST00000580419 RBFOX3A6NFN3 312 aa9.53□□□□□ -0.88
SMARCE1-216ENST00000580419 SMLR1H3BR10 107 aa9.53□□□□□ -0.88
SMARCE1-216ENST00000580419 RPL35P42766 123 aaKnown RBP9.53□□□□□ -0.88
SMARCE1-216ENST00000580419 RPS20P60866 119 aaKnown RBP9.53□□□□□ -0.88
SMARCE1-216ENST00000580419 NEXN-AS1Q8NBZ9 246 aa9.53□□□□□ -0.88
SMARCE1-216ENST00000580419 FAM30AQ9NZY2 134 aa9.53□□□□□ -0.88
SMARCE1-216ENST00000580419 KLK12Q9UKR0 248 aa9.53□□□□□ -0.88
SMARCE1-216ENST00000580419 PLA2G1BP04054 148 aaKnown RBP9.52□□□□□ -0.89
SMARCE1-216ENST00000580419 SPANXN1Q5VSR9 72 aa9.52□□□□□ -0.89
SMARCE1-216ENST00000580419 DNAJC30Q96LL9 226 aa9.52□□□□□ -0.89
SMARCE1-216ENST00000580419 AP1S3Q96PC3 154 aa9.52□□□□□ -0.89
SMARCE1-216ENST00000580419 BIN3Q9NQY0 253 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms