RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 SAMD10Q9BYL1 202 aa9.13□□□□□ -0.95
CCDC40-216ENST00000576241 PHLDA3Q9Y5J5 127 aa9.13□□□□□ -0.95
CCDC40-216ENST00000576241 URGCP-MRPS24S4R325 110 aa9.13□□□□□ -0.95
CCDC40-216ENST00000576241 TPT1P13693 172 aaKnown RBP9.12□□□□□ -0.95
CCDC40-216ENST00000576241 FHITP49789 147 aa9.12□□□□□ -0.95
CCDC40-216ENST00000576241 CRIP1P50238 77 aa9.12□□□□□ -0.95
CCDC40-216ENST00000576241 RGS21Q2M5E4 152 aa9.12□□□□□ -0.95
CCDC40-216ENST00000576241 SERTAD4-AS1Q5TG53 156 aa9.12□□□□□ -0.95
CCDC40-216ENST00000576241 UFSP1Q6NVU6 142 aa9.12□□□□□ -0.95
CCDC40-216ENST00000576241 C14orf178Q8N769 122 aaPredicted RBP9.12□□□□□ -0.95
CCDC40-216ENST00000576241 TRBV6-1A0A0K0K1D8 114 aa9.11□□□□□ -0.95
CCDC40-216ENST00000576241 G3V3Q6 166 aa9.11□□□□□ -0.95
CCDC40-216ENST00000576241 M0R381 172 aa9.11□□□□□ -0.95
CCDC40-216ENST00000576241 LTAP01374 205 aa9.11□□□□□ -0.95
CCDC40-216ENST00000576241 SMR3BP02814 79 aaPredicted RBP9.11□□□□□ -0.95
CCDC40-216ENST00000576241 AKR1C3P42330 323 aa9.11□□□□□ -0.95
CCDC40-216ENST00000576241 HAMPP81172 84 aa9.11□□□□□ -0.95
CCDC40-216ENST00000576241 DAZ4Q86SG3 579 aaKnown RBP9.11□□□□□ -0.95
CCDC40-216ENST00000576241 Q8N3U1 123 aa9.11□□□□□ -0.95
CCDC40-216ENST00000576241 DAZ3Q9NR90 486 aaKnown RBP9.11□□□□□ -0.95
CCDC40-216ENST00000576241 CYTL1Q9NRR1 136 aa9.11□□□□□ -0.95
CCDC40-216ENST00000576241 Q9UF83 564 aa9.11□□□□□ -0.95
CCDC40-216ENST00000576241 A0A087WWL8 130 aa9.1□□□□□ -0.95
CCDC40-216ENST00000576241 TMSB15BA0A087X1C1 80 aa9.1□□□□□ -0.95
CCDC40-216ENST00000576241 SEC11BP0C7V7 166 aa9.1□□□□□ -0.95
CCDC40-216ENST00000576241 ZNF674Q2M3X9 581 aa9.1□□□□□ -0.95
CCDC40-216ENST00000576241 LINC01559Q495D7 138 aa9.1□□□□□ -0.95
CCDC40-216ENST00000576241 ZFP82Q8N141 532 aa9.1□□□□□ -0.95
CCDC40-216ENST00000576241 SFRP2Q96HF1 295 aa9.1□□□□□ -0.95
CCDC40-216ENST00000576241 COX11Q9Y6N1 276 aa9.1□□□□□ -0.95
CCDC40-216ENST00000576241 PAGE4O60829 102 aa9.09□□□□□ -0.95
CCDC40-216ENST00000576241 RMI2Q96E14 147 aa9.09□□□□□ -0.95
CCDC40-216ENST00000576241 TRBV10-1A0A0K0K1A3 114 aa9.08□□□□□ -0.96
CCDC40-216ENST00000576241 LECT2O14960 151 aa9.08□□□□□ -0.96
CCDC40-216ENST00000576241 PFDN1O60925 122 aa9.08□□□□□ -0.96
CCDC40-216ENST00000576241 C1QBP02746 253 aa9.08□□□□□ -0.96
CCDC40-216ENST00000576241 S100A9P06702 114 aaKnown RBP9.08□□□□□ -0.96
CCDC40-216ENST00000576241 RPL36AP83881 106 aaKnown RBP9.08□□□□□ -0.96
CCDC40-216ENST00000576241 KCNIP4Q6PIL6 250 aa9.08□□□□□ -0.96
CCDC40-216ENST00000576241 FAM213BQ8TBF2 198 aa9.08□□□□□ -0.96
CCDC40-216ENST00000576241 SFT2D1Q8WV19 159 aa9.08□□□□□ -0.96
CCDC40-216ENST00000576241 RPL36ALQ969Q0 106 aaKnown RBP9.08□□□□□ -0.96
CCDC40-216ENST00000576241 A0A087WX48 190 aa9.07□□□□□ -0.96
CCDC40-216ENST00000576241 UMAD1C9J7I0 102 aa9.07□□□□□ -0.96
CCDC40-216ENST00000576241 SMLR1H3BR10 107 aa9.07□□□□□ -0.96
CCDC40-216ENST00000576241 WFDC2Q14508 124 aa9.07□□□□□ -0.96
CCDC40-216ENST00000576241 ZNF345Q14585 488 aa9.07□□□□□ -0.96
CCDC40-216ENST00000576241 NIT1Q86X76 327 aa9.07□□□□□ -0.96
CCDC40-216ENST00000576241 KCNRGQ8N5I3 272 aa9.07□□□□□ -0.96
CCDC40-216ENST00000576241 A0A1B0GV50 99 aa9.06□□□□□ -0.96
CCDC40-216ENST00000576241 ELOBQ15370 118 aa9.06□□□□□ -0.96
CCDC40-216ENST00000576241 PLA2G2DQ9UNK4 145 aa9.06□□□□□ -0.96
CCDC40-216ENST00000576241 RNF213Q63HN8 5207 aa9.06□□□□□ -0.96
CCDC40-216ENST00000576241 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.05□□□□□ -0.96
CCDC40-216ENST00000576241 TRBV7-3A0A075B6L6 115 aa9.05□□□□□ -0.96
CCDC40-216ENST00000576241 IGKV2D-24A0A075B6R9 120 aa9.05□□□□□ -0.96
CCDC40-216ENST00000576241 SCO2A0A1W2PP80 73 aa9.05□□□□□ -0.96
CCDC40-216ENST00000576241 MBD3L1Q8WWY6 194 aa9.05□□□□□ -0.96
CCDC40-216ENST00000576241 BAALCQ8WXS3 180 aa9.05□□□□□ -0.96
CCDC40-216ENST00000576241 CHCHD7Q9BUK0 85 aa9.05□□□□□ -0.96
CCDC40-216ENST00000576241 ZNF471Q9BX82 626 aaPredicted RBP9.05□□□□□ -0.96
CCDC40-216ENST00000576241 FAM30AQ9NZY2 134 aa9.05□□□□□ -0.96
CCDC40-216ENST00000576241 KLK12Q9UKR0 248 aa9.05□□□□□ -0.96
CCDC40-216ENST00000576241 A0A0D9SG52 128 aa9.04□□□□□ -0.96
CCDC40-216ENST00000576241 KANTRA0A1W2PQU2 76 aa9.04□□□□□ -0.96
CCDC40-216ENST00000576241 CXCL1P09341 107 aa9.04□□□□□ -0.96
CCDC40-216ENST00000576241 RAB4BP61018 213 aa9.04□□□□□ -0.96
CCDC40-216ENST00000576241 UBE2D3P61077 147 aa9.04□□□□□ -0.96
CCDC40-216ENST00000576241 UBE2D2P62837 147 aa9.04□□□□□ -0.96
CCDC40-216ENST00000576241 ZNF56Q15929 161 aa9.04□□□□□ -0.96
CCDC40-216ENST00000576241 BAGE2Q86Y30 109 aa9.04□□□□□ -0.96
CCDC40-216ENST00000576241 Q8N976 141 aa9.04□□□□□ -0.96
CCDC40-216ENST00000576241 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-216ENST00000576241 UBE2WQ96B02 151 aa9.04□□□□□ -0.96
CCDC40-216ENST00000576241 RBFOX3A6NFN3 312 aa9.03□□□□□ -0.96
CCDC40-216ENST00000576241 HMSDA8MTL9 139 aa9.03□□□□□ -0.96
CCDC40-216ENST00000576241 KRTAP29-1A8MX34 341 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-216ENST00000576241 BCL2L11O43521 198 aa9.03□□□□□ -0.96
CCDC40-216ENST00000576241 EIF5AP63241 154 aaKnown RBP9.03□□□□□ -0.96
CCDC40-216ENST00000576241 RPL19P84098 196 aaKnown RBP9.03□□□□□ -0.96
CCDC40-216ENST00000576241 OR10AG1Q8NH19 301 aa9.03□□□□□ -0.96
CCDC40-216ENST00000576241 TMEM262E9PQX1 116 aa9.02□□□□□ -0.97
CCDC40-216ENST00000576241 H2AFB1P0C5Y9 115 aa9.02□□□□□ -0.97
CCDC40-216ENST00000576241 Q0VG73 95 aa9.02□□□□□ -0.97
CCDC40-216ENST00000576241 SPANXN1Q5VSR9 72 aa9.02□□□□□ -0.97
CCDC40-216ENST00000576241 PRR27Q6MZM9 219 aa9.02□□□□□ -0.97
CCDC40-216ENST00000576241 Q6ZSA8 131 aa9.02□□□□□ -0.97
CCDC40-216ENST00000576241 OR10G8Q8NGN5 311 aa9.02□□□□□ -0.97
CCDC40-216ENST00000576241 MLST8Q9BVC4 326 aa9.02□□□□□ -0.97
CCDC40-216ENST00000576241 TRBV6-8A0A0A6YYG3 113 aa9.01□□□□□ -0.97
CCDC40-216ENST00000576241 PLA2G1BP04054 148 aaKnown RBP9.01□□□□□ -0.97
CCDC40-216ENST00000576241 TMUB2Q71RG4 321 aa9.01□□□□□ -0.97
CCDC40-216ENST00000576241 DNAJC30Q96LL9 226 aa9.01□□□□□ -0.97
CCDC40-216ENST00000576241 MUC21A0A0G2JKD1 596 aa9□□□□□ -0.97
CCDC40-216ENST00000576241 MUC21A0A140T8X8 626 aa9□□□□□ -0.97
CCDC40-216ENST00000576241 F5H697 171 aa9□□□□□ -0.97
CCDC40-216ENST00000576241 SNAI2O43623 268 aa9□□□□□ -0.97
CCDC40-216ENST00000576241 CRPP02741 224 aa9□□□□□ -0.97
CCDC40-216ENST00000576241 OR5AL1P0C617 328 aa9□□□□□ -0.97
CCDC40-216ENST00000576241 SMIM17P0DL12 118 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms